Wall clock time and date at job start Tue Mar 31 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99863 * 2 1 4 4 C 1.50704 * 109.47120 * 66.04461 * 3 2 1 5 5 C 1.38362 * 119.84773 * 269.72524 * 4 3 2 6 6 C 1.37955 * 120.15125 * 179.76228 * 5 4 3 7 7 C 1.39635 * 119.83981 * 0.53236 * 6 5 4 8 8 C 1.43202 * 120.14436 * 179.69792 * 7 6 5 9 9 N 7.46449 * 81.52369 * 52.99708 * 2 1 3 10 10 C 1.39630 * 119.70343 * 359.72211 * 7 6 5 11 11 C 1.37946 * 119.84528 * 359.97438 * 10 7 6 12 12 C 1.46895 * 111.00199 * 236.04752 * 2 1 3 13 13 C 1.52994 * 109.47270 * 293.95149 * 12 2 1 14 14 H 1.09009 * 109.47154 * 54.99975 * 13 12 2 15 15 C 1.47200 * 109.47451 * 295.00037 * 13 12 2 16 16 N 3.66492 * 112.02741 * 160.58932 * 2 1 3 17 17 C 1.52996 * 109.47347 * 174.99819 * 13 12 2 18 18 C 1.50702 * 109.47159 * 185.00014 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 H 1.08997 * 109.46756 * 183.95173 * 1 2 3 27 27 H 1.09001 * 109.47143 * 303.95211 * 1 2 3 28 28 H 1.08997 * 109.46972 * 63.95331 * 1 2 3 29 29 H 1.08992 * 109.47479 * 186.04297 * 3 2 1 30 30 H 1.08995 * 109.47358 * 306.04818 * 3 2 1 31 31 H 1.08002 * 119.92642 * 359.97438 * 5 4 3 32 32 H 1.07995 * 120.07962 * 180.25547 * 6 5 4 33 33 H 1.08003 * 120.07336 * 179.97438 * 10 7 6 34 34 H 1.07998 * 119.92220 * 179.97438 * 11 10 7 35 35 H 1.08998 * 109.47324 * 173.95150 * 12 2 1 36 36 H 1.09002 * 109.47421 * 53.95328 * 12 2 1 37 37 H 1.09004 * 109.47066 * 65.00217 * 17 13 12 38 38 H 1.08994 * 109.47405 * 305.00047 * 17 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 6 0.4519 2.7537 1.4028 6 6 0.1151 3.3706 2.5899 7 6 0.9787 3.2899 3.6842 8 6 0.6386 3.9332 4.9176 9 7 0.3688 4.4435 5.8961 10 6 2.1754 2.5797 3.5703 11 6 2.4967 1.9624 2.3792 12 6 1.9955 -0.7659 -1.1375 13 6 1.6316 -2.2425 -0.9704 14 1 0.5533 -2.3389 -0.8433 15 6 2.3157 -2.7854 0.2146 16 7 2.8436 -3.2043 1.1291 17 6 2.0701 -3.0198 -2.2131 18 6 1.6033 -4.4484 -2.1028 19 1 1.0489 -4.7698 -1.2334 20 6 1.8786 -5.3437 -3.1146 21 7 2.5533 -4.9523 -4.1734 22 14 1.2933 -7.1126 -2.9813 23 1 0.5617 -7.2969 -1.7023 24 1 0.3885 -7.4215 -4.1176 25 1 2.4640 -8.0256 -3.0184 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3633 0.5740 0.8525 28 1 -0.3633 0.4512 -0.9233 29 1 3.0797 1.3445 -0.1082 30 1 1.5611 1.9274 -0.8308 31 1 -0.2127 2.8196 0.5539 32 1 -0.8121 3.9183 2.6713 33 1 2.8480 2.5138 4.4128 34 1 3.4222 1.4131 2.2896 35 1 3.0798 -0.6610 -1.1756 36 1 1.5612 -0.3872 -2.0628 37 1 3.1572 -2.9977 -2.2907 38 1 1.6332 -2.5623 -3.1007 39 1 2.7473 -5.5822 -4.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078542155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:17 Heat of formation + Delta-G solvation = 75.050155 kcal Electronic energy + Delta-G solvation = -20417.336877 eV Core-core repulsion = 17324.807095 eV Total energy + Delta-G solvation = -3092.529782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01897 -38.08299 -36.72881 -35.64382 -33.70956 -32.47821 -31.44743 -31.13220 -27.63655 -27.31533 -24.97659 -23.04744 -22.72375 -21.70260 -21.11646 -19.21663 -16.84912 -16.59994 -16.06586 -15.90710 -15.49825 -14.86755 -14.70562 -14.49694 -14.25593 -14.14248 -13.83826 -13.29589 -13.12067 -12.95701 -12.87091 -12.44287 -12.40628 -12.06774 -11.90229 -11.81596 -11.52238 -11.43051 -11.28423 -11.19485 -11.07825 -10.71195 -10.53550 -10.18861 -9.59546 -9.31825 -9.25916 -9.07795 -8.49014 -8.29987 -6.12764 -4.15715 0.44807 1.04274 2.37709 2.63532 3.26448 3.35035 3.39505 3.51273 3.59504 3.72266 3.81903 4.07589 4.39188 4.48472 4.52772 4.56687 4.87552 4.99152 5.02512 5.23866 5.25731 5.27114 5.38425 5.46413 5.51500 5.63073 5.71102 5.72999 5.87851 5.95178 5.98279 6.02875 6.27013 6.32247 6.45747 6.50244 7.01429 7.05962 7.18817 7.38841 7.49173 7.82810 8.20038 8.56972 8.89323 9.50051 10.98133 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.002861 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.520963 B = 9785.465192 C =10003.705731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.540 5.540 3 C 0.086 3.914 4 C -0.040 4.040 5 C -0.115 4.115 6 C -0.071 4.071 7 C -0.038 4.038 8 C 0.258 3.742 9 N -0.425 5.425 10 C -0.069 4.069 11 C -0.098 4.098 12 C 0.062 3.938 13 C 0.010 3.990 14 H 0.101 0.899 15 C 0.256 3.744 16 N -0.479 5.479 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 17.841 6.171 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.263 5.263 3 C -0.042 4.042 4 C -0.041 4.041 5 C -0.134 4.134 6 C -0.092 4.092 7 C -0.041 4.041 8 C -0.057 4.057 9 N -0.100 5.100 10 C -0.090 4.090 11 C -0.117 4.117 12 C -0.066 4.066 13 C -0.012 4.012 14 H 0.118 0.882 15 C -0.061 4.061 16 N -0.156 5.156 17 C -0.008 4.008 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.925 17.705 9.329 20.225 hybrid contribution -0.691 -0.777 -1.474 1.804 sum -3.616 16.928 7.855 19.009 Atomic orbital electron populations 1.22574 0.87252 1.03155 1.00435 1.62042 1.08335 1.11665 1.44299 1.21150 1.01193 0.88874 0.92962 1.20092 0.93693 0.94493 0.95822 1.21041 0.96743 0.97893 0.97716 1.21115 0.98436 0.98032 0.91580 1.15998 0.97455 1.02427 0.88232 1.25794 0.93585 0.93359 0.92974 1.81257 1.08050 1.09718 1.10998 1.21189 0.94634 0.94859 0.98317 1.21035 1.00443 0.98432 0.91743 1.22280 1.00833 0.92368 0.91109 1.19246 0.99283 0.92388 0.90248 0.88170 1.28834 0.92759 0.91502 0.93038 1.80985 1.10657 1.10829 1.13094 1.19178 0.97737 0.94418 0.89429 1.21172 1.35978 0.94535 1.04652 0.92459 1.24954 0.94948 0.98840 0.95252 1.69946 1.39537 1.35234 1.08303 0.86544 0.78621 0.84842 0.78127 1.19667 1.20867 1.20953 0.90566 0.91334 0.95166 0.89376 0.93246 0.84996 0.85125 0.85063 0.84664 0.90099 0.92601 0.95550 0.94464 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.99 60.07 0.54 0.68 16 2 N -0.54 -6.12 4.45 -244.38 -1.09 -7.21 16 3 C 0.09 0.74 5.11 -4.97 -0.03 0.72 16 4 C -0.04 -0.33 4.89 -104.53 -0.51 -0.84 16 5 C -0.12 -0.81 7.89 -39.64 -0.31 -1.12 16 6 C -0.07 -0.50 9.76 -39.16 -0.38 -0.88 16 7 C -0.04 -0.31 5.73 -106.93 -0.61 -0.92 16 8 C 0.26 2.60 15.33 -22.47 -0.34 2.25 16 9 N -0.42 -5.26 18.54 41.84 0.78 -4.48 16 10 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 11 C -0.10 -0.81 9.68 -39.64 -0.38 -1.20 16 12 C 0.06 0.82 4.32 -3.83 -0.02 0.80 16 13 C 0.01 0.18 2.13 -93.41 -0.20 -0.02 16 14 H 0.10 1.63 6.34 -51.92 -0.33 1.30 16 15 C 0.26 5.09 13.67 -20.76 -0.28 4.81 16 16 N -0.48 -10.46 18.54 42.15 0.78 -9.68 16 17 C 0.03 0.68 4.42 -27.88 -0.12 0.56 16 18 C -0.53 -13.59 8.60 -34.44 -0.30 -13.89 16 19 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.08 0.86 6.37 -51.93 -0.33 0.52 16 27 H 0.07 0.62 5.90 -51.93 -0.31 0.32 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.73 7.87 -51.93 -0.41 0.32 16 30 H 0.05 0.37 8.06 -51.93 -0.42 -0.05 16 31 H 0.13 0.71 8.00 -52.49 -0.42 0.29 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -30.98 344.49 -7.17 -38.15 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -5.12 Total: -5.25 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.43 Total: -8.40 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 1.20 Total: -45.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.98 -7.17 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078542155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.202 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds