Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46941 * 2 1 4 4 C 1.46901 * 111.00195 * 298.50472 * 3 2 1 5 5 C 1.50699 * 109.47457 * 293.11128 * 4 3 2 6 6 H 1.08003 * 119.99360 * 354.95906 * 5 4 3 7 7 C 1.37874 * 120.00278 * 174.95254 * 5 4 3 8 8 N 1.31515 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47066 * 60.00257 * 9 7 5 11 11 H 1.48497 * 109.46976 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46840 * 300.00018 * 9 7 5 13 13 C 1.46893 * 110.99896 * 62.46003 * 3 2 1 14 14 C 1.50702 * 109.47087 * 66.04827 * 13 3 2 15 15 C 1.34623 * 126.09577 * 260.02100 * 14 13 3 16 16 N 1.36877 * 109.58309 * 179.97438 * 15 14 13 17 17 C 1.36803 * 131.39185 * 180.02562 * 16 15 14 18 18 C 1.34952 * 120.73684 * 179.97438 * 17 16 15 19 19 C 1.40375 * 120.40332 * 0.02562 * 18 17 16 20 20 C 1.36305 * 119.48913 * 0.02562 * 19 18 17 21 21 C 1.37116 * 108.71427 * 359.73207 * 16 15 14 22 22 C 1.40549 * 107.46608 * 0.42889 * 21 16 15 23 23 C 1.43196 * 126.78185 * 179.83467 * 22 21 16 24 24 N 5.29891 * 135.49952 * 27.97284 * 2 1 3 25 25 H 1.08995 * 109.47427 * 299.92199 * 1 2 3 26 26 H 1.09007 * 109.47180 * 59.92621 * 1 2 3 27 27 H 1.09005 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47584 * 240.00237 * 2 1 3 29 29 H 1.08994 * 109.47339 * 120.00432 * 2 1 3 30 30 H 1.09008 * 109.46840 * 53.10978 * 4 3 2 31 31 H 1.08996 * 109.47385 * 173.10410 * 4 3 2 32 32 H 0.97003 * 119.99864 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47542 * 306.04748 * 13 3 2 34 34 H 1.08999 * 109.47638 * 186.04423 * 13 3 2 35 35 H 1.07995 * 125.21374 * 359.97438 * 15 14 13 36 36 H 1.07991 * 119.62750 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.80068 * 180.02562 * 18 17 16 38 38 H 1.08002 * 120.25275 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.33641 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5780 2.0996 -1.2052 5 6 2.2462 1.5021 -2.4166 6 1 2.9912 0.7295 -2.2963 7 6 1.9064 1.9417 -3.6784 8 7 0.9995 2.8828 -3.8248 9 14 2.7342 1.2005 -5.1801 10 1 2.4646 -0.2592 -5.2241 11 1 2.1973 1.8407 -6.4077 12 1 4.1991 1.4313 -5.1022 13 6 1.5972 2.0927 1.2160 14 6 2.2687 1.4750 2.4155 15 6 1.7137 0.5944 3.2692 16 7 2.6235 0.2549 4.2338 17 6 2.5331 -0.5918 5.3045 18 6 3.5830 -0.7699 6.1336 19 6 4.7886 -0.0865 5.9101 20 6 4.8924 0.7611 4.8477 21 6 3.7932 0.9282 3.9919 22 6 3.5965 1.7171 2.8454 23 6 4.5516 2.5887 2.2301 24 7 5.3094 3.2802 1.7421 25 1 -0.3634 0.5126 0.8906 26 1 -0.3634 0.5150 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.4963 2.0092 -1.3053 31 1 1.8485 3.1522 -1.1231 32 1 0.7606 3.1923 -4.7126 33 1 0.5155 2.0144 1.3248 34 1 1.8799 3.1428 1.1421 35 1 0.7051 0.2141 3.2032 36 1 1.6114 -1.1236 5.4883 37 1 3.4951 -1.4424 6.9741 38 1 5.6271 -0.2305 6.5754 39 1 5.8137 1.2936 4.6627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = 112.237500 kcal Electronic energy + Delta-G solvation = -21465.386519 eV Core-core repulsion = 18374.469301 eV Total energy + Delta-G solvation = -3090.917218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37309 -37.84712 -36.40988 -35.79388 -33.17463 -32.55591 -30.87945 -29.33744 -28.26800 -27.22231 -24.92479 -23.51429 -23.17103 -22.82249 -20.66527 -19.17674 -18.17749 -17.01468 -16.27513 -16.04785 -15.70926 -15.48464 -14.86250 -14.78143 -14.55271 -14.01885 -13.69104 -13.21065 -12.99680 -12.82345 -12.66616 -12.30751 -12.00165 -11.85534 -11.77821 -11.58974 -11.44175 -11.25400 -10.98101 -10.87578 -10.66745 -10.46105 -10.33392 -10.01964 -9.72531 -9.19149 -8.52796 -8.35997 -7.42004 -7.11907 -5.96583 -3.96900 0.57258 1.07504 2.41240 2.49859 3.19290 3.22286 3.38054 3.41811 3.45815 4.05184 4.24914 4.47553 4.49403 4.57636 4.61386 4.82792 5.02324 5.13485 5.27878 5.38977 5.45646 5.57217 5.66821 5.79884 5.87268 5.93964 6.01293 6.07982 6.13686 6.20387 6.38076 6.46858 6.63001 6.73493 6.80704 6.95595 7.11470 7.36898 7.47343 7.87291 8.12032 8.16333 8.25878 8.61149 9.10711 9.66816 11.14074 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.004207 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.692400 B = 6653.867128 C = 7174.894471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.107 3.893 14 C -0.029 4.029 15 C -0.056 4.056 16 N -0.335 5.335 17 C 0.059 3.941 18 C -0.151 4.151 19 C -0.114 4.114 20 C -0.091 4.091 21 C 0.096 3.904 22 C -0.113 4.113 23 C 0.297 3.703 24 N -0.437 5.437 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -8.851 22.253 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.251 5.251 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.022 4.022 14 C -0.035 4.035 15 C -0.182 4.182 16 N 0.002 4.998 17 C -0.062 4.062 18 C -0.171 4.171 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.014 4.014 22 C -0.124 4.124 23 C -0.017 4.017 24 N -0.114 5.114 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.698 -7.828 21.448 22.895 hybrid contribution -0.885 -0.698 -0.718 1.336 sum 0.813 -8.526 20.730 22.430 Atomic orbital electron populations 1.22394 0.99528 1.00824 1.01983 1.21957 0.91887 0.91448 1.01406 1.62331 1.59311 1.01902 1.01544 1.19793 0.94665 0.93654 0.85403 1.21097 1.21924 1.21094 0.89980 0.92024 1.24955 0.95292 0.95280 0.98993 1.69945 1.31993 1.29043 1.23009 0.86599 0.79900 0.79191 0.81959 1.20320 1.21422 1.20213 1.20605 0.96166 0.97853 0.87584 1.19585 0.91911 0.96169 0.95790 1.21540 0.96553 1.07067 0.93078 1.41358 1.11306 1.28534 1.18640 1.21704 1.01492 0.94978 0.88023 1.20717 0.92831 1.02804 1.00775 1.21029 0.98014 0.96629 0.97812 1.20576 0.97149 0.99426 0.93846 1.18458 0.87413 0.98030 0.97548 1.15220 0.93176 1.05305 0.98719 1.24379 0.92316 0.92327 0.92703 1.81206 1.10198 1.11334 1.08652 0.93766 0.91186 0.93557 0.90248 0.92886 0.97727 0.95773 0.92971 0.93815 0.90347 0.80799 0.81875 0.83617 0.84647 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 9.26 37.16 0.34 -2.85 16 2 C 0.06 1.16 5.70 -3.82 -0.02 1.14 16 3 N -0.53 -11.29 4.69 -237.52 -1.11 -12.40 16 4 C 0.19 4.91 4.52 -4.98 -0.02 4.89 16 5 C -0.50 -14.28 8.40 -34.44 -0.29 -14.57 16 6 H 0.06 1.76 7.36 -52.48 -0.39 1.37 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.11 1.90 5.05 -4.98 -0.03 1.87 16 14 C -0.03 -0.44 4.75 -104.60 -0.50 -0.93 16 15 C -0.06 -0.68 10.68 -16.58 -0.18 -0.85 16 16 N -0.34 -3.70 2.93 -60.76 -0.18 -3.88 16 17 C 0.06 0.45 10.90 -16.50 -0.18 0.27 16 18 C -0.15 -0.97 9.97 -39.95 -0.40 -1.37 16 19 C -0.11 -0.85 10.09 -39.47 -0.40 -1.25 16 20 C -0.09 -0.93 10.05 -39.50 -0.40 -1.33 16 21 C 0.10 1.23 6.72 -83.85 -0.56 0.67 16 22 C -0.11 -1.79 6.07 -105.80 -0.64 -2.43 16 23 C 0.30 5.44 15.62 -22.47 -0.35 5.09 16 24 N -0.44 -8.90 18.54 41.84 0.78 -8.13 16 25 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 26 H 0.07 1.41 6.29 -51.93 -0.33 1.08 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 29 H 0.05 0.89 6.63 -51.93 -0.34 0.55 16 30 H 0.01 0.13 6.01 -51.92 -0.31 -0.18 16 31 H 0.02 0.68 7.91 -51.93 -0.41 0.27 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.04 0.71 6.07 -51.93 -0.32 0.40 16 34 H 0.08 1.49 7.92 -51.93 -0.41 1.08 16 35 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -33.42 331.78 -8.39 -41.81 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.87 Total: -3.16 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.72 Total: -10.15 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.22 Total: -50.66 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.42 -8.39 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.049 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds