Wall clock time and date at job start Tue Mar 31 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47116 * 2 1 4 4 H 1.08997 * 109.47064 * 57.17647 * 3 2 1 5 5 C 1.50695 * 109.47117 * 177.17800 * 3 2 1 6 6 C 1.38234 * 119.98533 * 101.97819 * 5 3 2 7 7 C 1.38186 * 120.04867 * 179.76441 * 6 5 3 8 8 C 1.38498 * 120.02608 * 0.51310 * 7 6 5 9 9 F 1.35098 * 120.00967 * 179.76725 * 8 7 6 10 10 C 1.38394 * 119.97328 * 359.74520 * 8 7 6 11 11 C 1.38445 * 119.94931 * 359.97438 * 10 8 7 12 12 F 1.35101 * 120.00964 * 180.02562 * 11 10 8 13 13 N 1.46902 * 109.46880 * 297.17994 * 3 2 1 14 14 C 1.46896 * 111.00006 * 87.01103 * 13 3 2 15 15 C 1.52997 * 109.47369 * 76.75442 * 14 13 3 16 16 C 1.46908 * 110.99784 * 323.05630 * 13 3 2 17 17 C 1.50699 * 109.46884 * 199.76906 * 16 13 3 18 18 H 1.08002 * 120.00036 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99674 * 180.02562 * 17 16 13 20 20 N 1.31507 * 120.00307 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99711 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47321 * 90.00187 * 21 19 17 23 23 H 1.48505 * 109.46939 * 210.00102 * 21 19 17 24 24 H 1.48501 * 109.47444 * 329.99760 * 21 19 17 25 25 H 1.08999 * 109.47430 * 309.92097 * 1 2 3 26 26 H 1.09000 * 109.47367 * 69.91914 * 1 2 3 27 27 H 1.09006 * 109.47327 * 189.91705 * 1 2 3 28 28 H 1.08995 * 109.47386 * 239.99653 * 2 1 3 29 29 H 1.09001 * 109.46928 * 119.99346 * 2 1 3 30 30 H 1.07999 * 119.97507 * 0.02562 * 6 5 3 31 31 H 1.08005 * 119.98865 * 180.26175 * 7 6 5 32 32 H 1.07996 * 120.02670 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.46950 * 196.75444 * 14 13 3 34 34 H 1.08999 * 109.47148 * 316.75143 * 14 13 3 35 35 H 1.08993 * 109.47637 * 183.77506 * 15 14 13 36 36 H 1.09001 * 109.46972 * 303.78171 * 15 14 13 37 37 H 1.09005 * 109.47220 * 63.77040 * 15 14 13 38 38 H 1.08994 * 109.47015 * 319.77500 * 16 13 3 39 39 H 1.08997 * 109.46836 * 79.77059 * 16 13 3 40 40 H 0.97001 * 120.00502 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6359 1.9708 0.8636 5 6 3.5453 1.4431 0.0699 6 6 4.2899 1.6726 -1.0719 7 6 5.6702 1.6783 -1.0083 8 6 6.3094 1.4434 0.1977 9 9 7.6590 1.4444 0.2585 10 6 5.5650 1.2083 1.3405 11 6 4.1821 1.2086 1.2767 12 9 3.4542 0.9797 2.3916 13 7 1.6067 2.1151 -1.2321 14 6 0.2700 2.7022 -1.0692 15 6 0.3754 3.9917 -0.2525 16 6 1.6409 1.1929 -2.3751 17 6 1.6726 1.9836 -3.6576 18 1 1.6674 3.0631 -3.6267 19 6 1.7073 1.3287 -4.8705 20 7 1.7131 0.0142 -4.9081 21 14 1.7473 2.3088 -6.4602 22 1 3.1574 2.5726 -6.8438 23 1 1.0782 1.5343 -7.5362 24 1 1.0379 3.5987 -6.2646 25 1 -0.3634 0.6595 0.7881 26 1 -0.3634 0.3528 -0.9652 27 1 -0.3634 -1.0123 0.1770 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.7923 1.8518 -2.0135 31 1 6.2510 1.8619 -1.9002 32 1 6.0626 1.0254 2.2814 33 1 -0.1502 2.9264 -2.0497 34 1 -0.3766 1.9950 -0.5499 35 1 -0.6227 4.3917 -0.0745 36 1 0.8572 3.7789 0.7018 37 1 0.9672 4.7231 -0.8030 38 1 2.5317 0.5681 -2.3113 39 1 0.7525 0.5616 -2.3594 40 1 1.7371 -0.4465 -5.7614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:14 Heat of formation + Delta-G solvation = -59.107553 kcal Electronic energy + Delta-G solvation = -23283.475801 eV Core-core repulsion = 19734.439318 eV Total energy + Delta-G solvation = -3549.036483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79764 -48.76887 -39.42566 -37.39901 -33.00859 -32.29967 -30.92856 -30.30316 -29.58214 -26.94878 -25.09769 -23.12441 -22.49060 -21.91313 -21.12991 -19.10374 -17.93076 -17.03819 -16.55900 -15.86668 -15.72771 -15.42202 -15.09923 -14.85002 -14.49820 -14.21764 -14.09911 -13.96954 -13.39516 -12.95433 -12.74153 -12.39517 -12.19740 -12.12873 -11.84210 -11.63368 -11.29041 -11.09873 -11.02065 -10.95785 -10.77405 -10.63734 -10.58318 -10.23185 -10.05989 -9.69463 -9.24829 -8.73735 -8.47421 -8.25809 -7.23858 -6.08431 -4.10610 1.24109 1.35159 3.27947 3.35269 3.38318 3.70203 4.10500 4.36023 4.61718 4.72183 4.94837 5.05713 5.19644 5.27303 5.41854 5.47591 5.58164 5.69189 5.72462 5.88906 5.98464 6.02035 6.07273 6.10477 6.20847 6.23997 6.30773 6.38568 6.58759 6.61177 6.64357 6.70681 6.76402 6.80394 7.10980 7.18576 7.36426 7.77081 8.03865 8.13819 8.47126 8.99298 9.54774 11.01050 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.006566 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.038691 B = 4263.479203 C = 5418.466656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.122 3.878 4 H 0.080 0.920 5 C -0.103 4.103 6 C -0.034 4.034 7 C -0.166 4.166 8 C 0.113 3.887 9 F -0.141 7.141 10 C -0.202 4.202 11 C 0.120 3.880 12 F -0.136 7.136 13 N -0.528 5.528 14 C 0.041 3.959 15 C -0.144 4.144 16 C 0.182 3.818 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.178 0.822 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.004 0.996 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 2.068 10.860 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.013 3.987 4 H 0.098 0.902 5 C -0.105 4.105 6 C -0.052 4.052 7 C -0.185 4.185 8 C 0.093 3.907 9 F -0.119 7.119 10 C -0.222 4.222 11 C 0.100 3.900 12 F -0.115 7.115 13 N -0.251 5.251 14 C -0.087 4.087 15 C -0.201 4.201 16 C 0.058 3.942 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.195 0.805 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.038 2.295 10.672 11.330 hybrid contribution -0.251 -0.326 -0.485 0.636 sum 2.787 1.969 10.186 10.742 Atomic orbital electron populations 1.22041 0.95767 1.00912 1.02378 1.22192 0.96395 0.97440 1.02786 1.20476 0.89237 0.93645 0.95385 0.90165 1.20080 0.97259 1.01605 0.91558 1.21615 0.91734 0.91404 1.00406 1.21353 0.95916 1.04460 0.96726 1.17346 0.76618 1.02386 0.94306 1.91481 1.29151 1.94122 1.97169 1.20785 0.92634 1.09468 0.99309 1.17155 0.88262 1.01999 0.82542 1.91471 1.77393 1.92002 1.50606 1.62251 1.25304 1.35113 1.02471 1.22298 0.90482 0.95069 1.00844 1.21791 1.00181 0.98490 0.99675 1.20003 0.96806 0.90834 0.86603 1.21199 1.50231 0.93655 0.89833 0.91800 1.24964 0.95426 0.94820 0.99154 1.69942 1.50665 1.06928 1.25918 0.86565 0.78176 0.80004 0.83071 1.20662 1.21416 1.19881 0.93199 0.90935 0.93272 0.90015 0.92621 0.80461 0.84337 0.84260 0.90014 0.94102 0.93548 0.93711 0.92409 0.94725 0.97833 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.10 37.15 0.30 -2.11 16 2 C -0.15 -2.52 4.86 -26.73 -0.13 -2.65 16 3 C 0.12 2.09 1.72 -68.86 -0.12 1.97 16 4 H 0.08 1.32 6.37 -51.93 -0.33 0.99 16 5 C -0.10 -1.75 5.07 -104.55 -0.53 -2.28 16 6 C -0.03 -0.60 8.43 -39.60 -0.33 -0.93 16 7 C -0.17 -2.59 10.02 -39.50 -0.40 -2.98 16 8 C 0.11 1.68 7.30 -39.43 -0.29 1.39 16 9 F -0.14 -2.05 17.27 2.25 0.04 -2.01 16 10 C -0.20 -2.89 10.01 -39.45 -0.39 -3.28 16 11 C 0.12 1.86 7.20 -39.43 -0.28 1.58 16 12 F -0.14 -2.06 16.54 2.25 0.04 -2.03 16 13 N -0.53 -10.12 3.52 -229.48 -0.81 -10.92 16 14 C 0.04 0.72 4.92 -3.83 -0.02 0.70 16 15 C -0.14 -2.16 10.06 37.16 0.37 -1.78 16 16 C 0.18 4.17 2.01 -4.97 -0.01 4.16 16 17 C -0.51 -13.05 8.21 -34.44 -0.28 -13.34 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -24.93 13.29 55.43 0.74 -24.19 16 21 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.05 0.70 7.49 -51.93 -0.39 0.32 16 26 H 0.07 1.28 4.62 -51.93 -0.24 1.04 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.57 6.08 -51.93 -0.32 1.26 16 29 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 30 H 0.18 3.59 5.02 -52.49 -0.26 3.32 16 31 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.08 1.60 7.29 -51.93 -0.38 1.22 16 34 H 0.04 0.68 4.20 -51.93 -0.22 0.46 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.65 6.81 -51.93 -0.35 0.29 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.85 5.23 -51.93 -0.27 0.57 16 39 H 0.00 0.10 5.68 -51.93 -0.30 -0.20 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -26.13 318.26 -7.56 -33.69 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.13 Total: 3.17 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.21 Total: -18.11 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.07 Total: -35.11 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.13 -7.56 -33.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.418 kcal (2) G-P(sol) polarization free energy of solvation -26.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds