Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47590 * 2 1 4 4 H 1.08998 * 109.47199 * 180.86706 * 3 2 1 5 5 C 1.50707 * 109.46916 * 60.86712 * 3 2 1 6 6 C 1.38223 * 119.98822 * 265.00307 * 5 3 2 7 7 C 1.38187 * 120.04706 * 180.02562 * 6 5 3 8 8 C 1.38495 * 120.02722 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.01146 * 179.97438 * 8 7 6 10 10 C 1.38390 * 119.97566 * 0.02562 * 8 7 6 11 11 C 1.38447 * 119.94966 * 359.77191 * 10 8 7 12 12 F 1.35098 * 120.01411 * 180.22868 * 11 10 8 13 13 N 1.46896 * 109.47171 * 300.87275 * 3 2 1 14 14 C 1.46902 * 111.00033 * 184.79100 * 13 3 2 15 15 C 1.52999 * 109.47237 * 195.72910 * 14 13 3 16 16 C 1.46899 * 110.99952 * 308.74202 * 13 3 2 17 17 C 1.50699 * 109.47235 * 301.20639 * 16 13 3 18 18 H 1.08005 * 119.99913 * 1.44008 * 17 16 13 19 19 C 1.37877 * 120.00020 * 181.43940 * 17 16 13 20 20 N 1.31513 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47187 * 59.99371 * 21 19 17 23 23 H 1.48494 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46718 * 299.99336 * 21 19 17 25 25 H 1.08997 * 109.47227 * 56.19127 * 1 2 3 26 26 H 1.08999 * 109.46995 * 176.20037 * 1 2 3 27 27 H 1.09001 * 109.46516 * 296.19557 * 1 2 3 28 28 H 1.09005 * 109.47154 * 120.00635 * 2 1 3 29 29 H 1.09007 * 109.46960 * 240.00200 * 2 1 3 30 30 H 1.07993 * 119.97762 * 359.97438 * 6 5 3 31 31 H 1.08005 * 119.98909 * 180.02562 * 7 6 5 32 32 H 1.08006 * 120.03031 * 179.97438 * 10 8 7 33 33 H 1.08999 * 109.46970 * 315.72711 * 14 13 3 34 34 H 1.09000 * 109.47410 * 75.72883 * 14 13 3 35 35 H 1.09000 * 109.47191 * 174.26260 * 15 14 13 36 36 H 1.09006 * 109.47366 * 294.26362 * 15 14 13 37 37 H 1.08999 * 109.47346 * 54.26405 * 15 14 13 38 38 H 1.09000 * 109.47389 * 61.20652 * 16 13 3 39 39 H 1.09006 * 109.47151 * 181.20491 * 16 13 3 40 40 H 0.97002 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 -0.0156 5 6 1.5554 2.1466 1.2411 6 6 0.3998 2.9038 1.1991 7 6 -0.0454 3.5505 2.3363 8 6 0.6656 3.4401 3.5196 9 9 0.2303 4.0728 4.6311 10 6 1.8228 2.6822 3.5629 11 6 2.2657 2.0314 2.4240 12 9 3.3926 1.2874 2.4659 13 7 1.5334 2.1410 -1.1887 14 6 2.0944 3.4954 -1.2825 15 6 1.2728 4.3202 -2.2752 16 6 1.8092 1.3713 -2.4091 17 6 3.2947 1.1559 -2.5422 18 1 3.9650 1.5310 -1.7829 19 6 3.7983 0.4798 -3.6333 20 7 2.9821 0.0225 -4.5576 21 14 5.6397 0.2121 -3.7979 22 1 6.1326 -0.5673 -2.6340 23 1 5.9212 -0.5351 -5.0498 24 1 6.3290 1.5268 -3.8411 25 1 -0.3633 0.5718 -0.8539 26 1 -0.3633 -1.0254 -0.0681 27 1 -0.3632 0.4537 0.9222 28 1 1.8934 -0.5140 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 -0.1551 2.9908 0.2767 31 1 -0.9487 4.1415 2.3025 32 1 2.3782 2.5959 4.4851 33 1 2.0630 3.9704 -0.3019 34 1 3.1275 3.4379 -1.6254 35 1 1.6246 5.3519 -2.2693 36 1 1.3867 3.9033 -3.2759 37 1 0.2218 4.2932 -1.9879 38 1 1.3058 0.4062 -2.3516 39 1 1.4426 1.9212 -3.2761 40 1 3.3363 -0.4528 -5.3254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -68.207585 kcal Electronic energy + Delta-G solvation = -23343.306193 eV Core-core repulsion = 19793.875103 eV Total energy + Delta-G solvation = -3549.431090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.95431 -48.79150 -39.43897 -37.14652 -33.32742 -32.52793 -30.75731 -30.19181 -29.24188 -26.68540 -25.08787 -23.28227 -22.75126 -22.19183 -20.66830 -18.90076 -18.06615 -17.04521 -16.53914 -15.98249 -15.81650 -15.41937 -15.18552 -14.88723 -14.55688 -14.31749 -14.08670 -13.98848 -13.19582 -13.10144 -12.75079 -12.51043 -12.25941 -11.76679 -11.66225 -11.50944 -11.42083 -11.27788 -11.04364 -10.83388 -10.67038 -10.55604 -10.28868 -10.06854 -9.97072 -9.86886 -9.53185 -8.89805 -8.44465 -8.35996 -7.26856 -6.06040 -4.14351 1.08769 1.15223 3.26880 3.32126 3.35098 3.51606 3.97673 4.38467 4.53863 4.64905 4.81640 4.99434 5.05509 5.25762 5.35028 5.65720 5.80262 5.81441 5.87634 5.92484 6.01289 6.06138 6.07986 6.16191 6.28714 6.38239 6.42416 6.46258 6.52427 6.68911 6.77642 6.88257 6.90232 6.93942 7.01306 7.23298 7.52650 7.88196 8.00543 8.21884 8.25197 8.94991 9.52482 10.98904 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.005345 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.631733 B = 5237.152148 C = 5564.207195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.132 3.868 4 H 0.060 0.940 5 C -0.102 4.102 6 C -0.037 4.037 7 C -0.170 4.170 8 C 0.112 3.888 9 F -0.140 7.140 10 C -0.198 4.198 11 C 0.124 3.876 12 F -0.130 7.130 13 N -0.531 5.531 14 C 0.049 3.951 15 C -0.139 4.139 16 C 0.184 3.816 17 C -0.548 4.548 18 H 0.054 0.946 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.884 3.116 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 5.403 12.182 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C 0.023 3.977 4 H 0.077 0.923 5 C -0.104 4.104 6 C -0.055 4.055 7 C -0.189 4.189 8 C 0.093 3.907 9 F -0.119 7.119 10 C -0.217 4.217 11 C 0.104 3.896 12 F -0.109 7.109 13 N -0.255 5.255 14 C -0.080 4.080 15 C -0.196 4.196 16 C 0.059 3.941 17 C -0.588 4.588 18 H 0.072 0.928 19 C -0.135 4.135 20 N -0.528 5.528 21 Si 0.712 3.288 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.204 1.204 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.055 5.334 12.081 14.528 hybrid contribution 2.263 -0.274 0.051 2.280 sum -3.793 5.060 12.132 13.682 Atomic orbital electron populations 1.21712 0.95871 1.00441 1.01853 1.21533 0.96253 0.94553 1.02523 1.20247 0.97766 0.92890 0.86824 0.92269 1.20360 0.95784 0.99462 0.94751 1.21020 0.94063 0.92236 0.98160 1.21255 1.01903 1.03937 0.91827 1.17277 0.94470 0.95803 0.83197 1.91491 1.89192 1.80103 1.51069 1.20882 0.98782 1.02615 0.99466 1.17229 0.84558 0.93949 0.93832 1.91517 1.48370 1.74021 1.96966 1.62571 1.56907 1.02292 1.03756 1.21964 0.98026 0.90208 0.97754 1.21683 0.99700 0.97885 1.00361 1.19860 0.94691 0.93589 0.85984 1.21664 0.93616 1.36554 1.06917 0.92757 1.24902 0.97445 0.95424 0.95685 1.69919 1.34468 1.37537 1.10842 0.86778 0.86196 0.78350 0.77457 1.20235 1.21232 1.20355 0.91022 0.94072 0.93972 0.93247 0.89109 0.82545 0.84505 0.84097 0.93227 0.93644 0.93809 0.92160 0.93013 0.94282 0.94675 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.99 37.16 0.33 -1.90 16 2 C -0.11 -1.99 5.12 -26.73 -0.14 -2.12 16 3 C 0.13 2.40 1.27 -68.87 -0.09 2.31 16 4 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 5 C -0.10 -1.58 3.41 -104.54 -0.36 -1.94 16 6 C -0.04 -0.50 6.81 -39.61 -0.27 -0.77 16 7 C -0.17 -2.05 10.02 -39.51 -0.40 -2.45 16 8 C 0.11 1.42 7.30 -39.43 -0.29 1.13 16 9 F -0.14 -1.76 17.27 2.25 0.04 -1.73 16 10 C -0.20 -2.59 10.01 -39.45 -0.39 -2.99 16 11 C 0.12 1.87 7.24 -39.42 -0.29 1.59 16 12 F -0.13 -2.12 16.57 2.25 0.04 -2.09 16 13 N -0.53 -10.05 2.68 -229.47 -0.61 -10.67 16 14 C 0.05 0.88 5.00 -3.82 -0.02 0.86 16 15 C -0.14 -2.25 9.84 37.16 0.37 -1.89 16 16 C 0.18 4.29 4.23 -4.98 -0.02 4.27 16 17 C -0.55 -14.15 7.19 -34.44 -0.25 -14.40 16 18 H 0.05 1.42 5.95 -52.48 -0.31 1.11 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 21 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.07 1.20 6.92 -51.93 -0.36 0.84 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.61 6.69 -51.93 -0.35 0.26 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.89 6.14 -51.93 -0.32 1.57 16 30 H 0.16 2.13 7.16 -52.49 -0.38 1.76 16 31 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.05 0.82 6.15 -51.93 -0.32 0.50 16 34 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.11 6.90 -51.93 -0.36 0.75 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.97 5.78 -51.93 -0.30 0.67 16 39 H 0.04 0.89 6.63 -51.93 -0.34 0.55 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -26.47 320.78 -7.27 -33.74 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.38 Total: 0.81 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.90 Total: -16.55 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.12 Total: -34.97 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.47 -7.27 -33.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.471 kcal (2) G-P(sol) polarization free energy of solvation -26.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds