Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 120.00124 * 3 2 1 6 6 H 1.48496 * 109.47259 * 240.00143 * 3 2 1 7 7 C 1.38942 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99706 * 203.03056 * 7 2 1 9 9 N 1.37091 * 120.00442 * 23.03069 * 7 2 1 10 10 C 1.34781 * 120.00258 * 43.14424 * 9 7 2 11 11 O 1.21296 * 119.99402 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46926 * 180.02562 * 12 10 9 14 14 O 1.42896 * 109.47243 * 179.97438 * 13 12 10 15 15 C 1.42895 * 114.00194 * 179.97438 * 14 13 12 16 16 C 1.53179 * 109.54473 * 269.55546 * 15 14 13 17 17 C 1.53098 * 109.16256 * 183.15358 * 16 15 14 18 18 O 1.42906 * 109.41561 * 57.60750 * 17 16 15 19 19 C 1.42898 * 114.09644 * 298.84477 * 18 17 16 20 20 C 1.53087 * 109.41863 * 61.15816 * 19 18 17 21 21 C 1.46508 * 120.00358 * 223.14930 * 9 7 2 22 22 C 1.53002 * 117.49453 * 8.25806 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.96999 * 120.00137 * 186.13805 * 1 2 3 25 25 H 1.08997 * 109.46517 * 299.99567 * 12 10 9 26 26 H 1.08991 * 109.47105 * 59.99758 * 12 10 9 27 27 H 1.08997 * 109.47041 * 300.00062 * 13 12 10 28 28 H 1.09006 * 109.47275 * 59.99392 * 13 12 10 29 29 H 1.09003 * 109.54444 * 29.82368 * 15 14 13 30 30 H 1.08996 * 109.52139 * 303.05635 * 16 15 14 31 31 H 1.08997 * 109.51842 * 63.24658 * 16 15 14 32 32 H 1.09002 * 109.47647 * 297.62760 * 17 16 15 33 33 H 1.08994 * 109.47734 * 177.59574 * 17 16 15 34 34 H 1.09002 * 109.47994 * 301.17203 * 19 18 17 35 35 H 1.09005 * 109.48958 * 181.14872 * 19 18 17 36 36 H 1.09003 * 109.52084 * 182.48309 * 20 19 18 37 37 H 1.08999 * 109.52630 * 62.29377 * 20 19 18 38 38 H 1.08999 * 115.55190 * 153.96769 * 21 9 7 39 39 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 40 40 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 41 41 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 42 42 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0243 -1.2407 0.3654 9 7 1.4054 -2.3431 -0.4655 10 6 0.6710 -2.3041 -1.5950 11 8 0.5445 -1.2606 -2.2003 12 6 0.0072 -3.5569 -2.1058 13 6 -0.7576 -3.2405 -3.3926 14 8 -1.3866 -4.4285 -3.8773 15 6 -2.1319 -4.2414 -5.0821 16 6 -3.5797 -3.8784 -4.7379 17 6 -4.3887 -3.7574 -6.0320 18 8 -4.3126 -4.9869 -6.7565 19 6 -2.9875 -5.3532 -7.1464 20 6 -2.1223 -5.5384 -5.8971 21 6 1.5587 -3.6035 0.2654 22 6 2.2373 -3.5476 1.6355 23 6 2.9767 -4.1511 0.4396 24 1 -0.4850 -0.8352 0.0898 25 1 0.7658 -4.3122 -2.3109 26 1 -0.6862 -3.9332 -1.3538 27 1 -1.5161 -2.4849 -3.1879 28 1 -0.0638 -2.8643 -4.1445 29 1 -1.6828 -3.4393 -5.6679 30 1 -4.0112 -4.6579 -4.1101 31 1 -3.5999 -2.9276 -4.2053 32 1 -3.9812 -2.9506 -6.6413 33 1 -5.4294 -3.5412 -5.7911 34 1 -2.5618 -4.5673 -7.7703 35 1 -3.0188 -6.2867 -7.7085 36 1 -1.1003 -5.7747 -6.1936 37 1 -2.5244 -6.3514 -5.2926 38 1 0.7532 -4.3256 0.1314 39 1 2.5693 -2.5730 1.9932 40 1 1.8783 -4.2329 2.4033 41 1 3.1040 -5.2335 0.4206 42 1 3.7955 -3.5738 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084533971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -102.364699 kcal Electronic energy + Delta-G solvation = -22841.362507 eV Core-core repulsion = 19401.537769 eV Total energy + Delta-G solvation = -3439.824738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70374 -38.91121 -37.40084 -36.22646 -33.24006 -32.70074 -31.30250 -31.15508 -29.98889 -25.32946 -24.32348 -23.78010 -22.66650 -21.76661 -21.27740 -20.49962 -19.16560 -17.28884 -16.68001 -16.32127 -16.24578 -15.79919 -15.39077 -15.05208 -14.73653 -14.38972 -13.98781 -13.85611 -13.67955 -13.29726 -13.17399 -12.77356 -12.54538 -12.03781 -11.83471 -11.50918 -11.40743 -11.15883 -11.00081 -10.78292 -10.75253 -10.63150 -10.46554 -10.26235 -10.10668 -9.88831 -9.84170 -9.74640 -9.31478 -8.70827 -8.14396 -7.36831 -6.40313 -3.92095 3.39499 3.50272 3.55100 3.64936 3.72037 3.87436 4.34702 4.61429 4.63927 4.67079 4.77631 4.80821 4.97961 5.02998 5.21443 5.26873 5.34156 5.44515 5.46289 5.47838 5.51343 5.54413 5.62518 5.68312 5.71617 5.83919 5.87708 5.98462 6.04162 6.07183 6.15068 6.25824 6.35556 6.38589 6.65863 6.86095 6.96611 7.39956 7.85323 8.36319 8.76250 9.13600 9.52757 10.04077 10.87672 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.003895 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.483123 B = 7186.210155 C = 8092.685013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.041 3.959 3 Si 1.075 2.925 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.431 4.431 8 H 0.071 0.929 9 N -0.429 5.429 10 C 0.463 3.537 11 O -0.541 6.541 12 C -0.129 4.129 13 C 0.083 3.917 14 O -0.386 6.386 15 C 0.091 3.909 16 C -0.180 4.180 17 C 0.064 3.936 18 O -0.384 6.384 19 C 0.064 3.936 20 C -0.153 4.153 21 C 0.066 3.934 22 C -0.174 4.174 23 C -0.201 4.201 24 H 0.270 0.730 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 -10.592 -8.202 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.172 4.172 3 Si 0.902 3.098 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.557 4.557 8 H 0.089 0.911 9 N -0.150 5.150 10 C 0.251 3.749 11 O -0.420 6.420 12 C -0.170 4.170 13 C 0.006 3.994 14 O -0.305 6.305 15 C 0.032 3.968 16 C -0.218 4.218 17 C -0.013 4.013 18 O -0.303 6.303 19 C -0.013 4.013 20 C -0.191 4.191 21 C -0.040 4.040 22 C -0.212 4.212 23 C -0.240 4.240 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.472 -8.686 -8.541 12.977 hybrid contribution 0.502 -1.475 0.272 1.582 sum -3.971 -10.161 -8.270 13.690 Atomic orbital electron populations 1.70565 1.07500 1.30959 1.38413 1.26165 0.95960 1.02198 0.92906 0.83440 0.74982 0.74973 0.76397 1.20676 1.21538 1.21175 1.19766 0.98637 0.86913 1.50354 0.91147 1.42962 1.46695 1.06362 1.18957 1.19898 0.84156 0.89211 0.81665 1.90615 1.62100 1.31992 1.57335 1.21443 0.99886 0.98810 0.96862 1.22200 0.95737 0.86045 0.95404 1.87837 1.67615 1.34203 1.40853 1.22001 0.90981 0.97223 0.86560 1.22741 0.96440 1.03647 0.98974 1.22572 1.01052 0.86189 0.91481 1.87918 1.27461 1.40701 1.74237 1.22573 0.82785 1.00836 0.95088 1.22295 1.01383 0.98273 0.97116 1.21814 0.94376 0.90763 0.97061 1.23090 1.04287 1.02869 0.90906 1.23250 0.97465 0.99257 1.04056 0.91997 0.89870 0.90119 0.92603 0.92770 0.92102 0.90157 0.90320 0.93018 0.88521 0.93037 0.88414 0.90216 0.90153 0.87676 0.87390 0.89729 0.89675 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.57 12.33 55.50 0.68 -24.88 16 2 C 0.04 1.16 4.22 -17.47 -0.07 1.09 16 3 Si 1.08 25.58 29.98 -169.99 -5.10 20.48 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.43 -11.83 7.74 -14.94 -0.12 -11.95 16 8 H 0.07 1.90 7.47 -52.48 -0.39 1.51 16 9 N -0.43 -10.68 2.61 -107.72 -0.28 -10.96 16 10 C 0.46 11.57 6.43 -10.98 -0.07 11.50 16 11 O -0.54 -15.70 13.81 5.54 0.08 -15.62 16 12 C -0.13 -2.52 4.63 -27.88 -0.13 -2.65 16 13 C 0.08 1.51 5.04 37.16 0.19 1.70 16 14 O -0.39 -6.25 10.00 -35.23 -0.35 -6.60 16 15 C 0.09 1.20 2.70 -26.54 -0.07 1.12 16 16 C -0.18 -2.20 5.76 -26.59 -0.15 -2.35 16 17 C 0.06 0.67 6.84 37.21 0.25 0.92 16 18 O -0.38 -4.45 10.77 -35.23 -0.38 -4.83 16 19 C 0.06 0.61 6.84 37.20 0.25 0.86 16 20 C -0.15 -1.67 5.79 -26.59 -0.15 -1.82 16 21 C 0.07 1.31 5.99 -67.92 -0.41 0.91 16 22 C -0.17 -3.16 9.81 -26.73 -0.26 -3.42 16 23 C -0.20 -3.49 10.28 -26.73 -0.27 -3.76 16 24 H 0.27 8.26 7.41 -40.82 -0.30 7.96 16 25 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 26 H 0.08 1.48 7.57 -51.93 -0.39 1.09 16 27 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 28 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.00 7.99 -51.93 -0.42 0.59 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.11 1.86 6.81 -51.93 -0.35 1.51 16 39 H 0.11 2.21 6.85 -51.93 -0.36 1.85 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -33.08 340.29 -8.13 -41.21 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.89 Total: 3.92 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.01 Total: -7.85 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.40 Total: -35.85 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.65 Total: -27.04 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.10 Total: 20.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.08 -8.13 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084533971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.158 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds