Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47231 * 2 1 4 4 N 1.30133 * 121.06266 * 90.02061 * 3 2 1 5 5 S 1.69948 * 105.76450 * 179.97438 * 4 3 2 6 6 C 1.72296 * 94.57561 * 0.02562 * 5 4 3 7 7 N 1.38322 * 127.50525 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00114 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47088 * 89.99756 * 8 7 6 10 10 H 1.08001 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00153 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00182 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99828 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47089 * 89.99989 * 13 11 9 15 15 H 1.48502 * 109.46721 * 209.99684 * 13 11 9 16 16 H 1.48497 * 109.46981 * 329.99631 * 13 11 9 17 17 C 1.46500 * 119.99461 * 359.97135 * 7 6 5 18 18 C 1.53001 * 109.47056 * 90.00508 * 17 7 6 19 19 C 1.52998 * 109.47244 * 179.97438 * 18 17 7 20 20 C 1.53002 * 109.47135 * 174.99762 * 19 18 17 21 21 C 1.52999 * 109.47271 * 294.99853 * 19 18 17 22 22 N 1.31288 * 121.06452 * 270.00558 * 3 2 1 23 23 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46760 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.46832 * 59.99835 * 1 2 3 26 26 H 1.08994 * 109.47173 * 240.00525 * 2 1 3 27 27 H 1.09000 * 109.47548 * 119.99957 * 2 1 3 28 28 H 1.08996 * 109.47110 * 210.00010 * 8 7 6 29 29 H 1.09001 * 109.47457 * 330.00424 * 8 7 6 30 30 H 0.97002 * 120.00047 * 180.02562 * 12 11 9 31 31 H 1.08998 * 109.47013 * 209.99644 * 17 7 6 32 32 H 1.08995 * 109.47461 * 330.00343 * 17 7 6 33 33 H 1.09003 * 109.46944 * 299.99612 * 18 17 7 34 34 H 1.08999 * 109.47403 * 59.98936 * 18 17 7 35 35 H 1.09000 * 109.46687 * 54.99948 * 19 18 17 36 36 H 1.08999 * 109.47045 * 59.99951 * 20 19 18 37 37 H 1.08996 * 109.47374 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47087 * 300.00256 * 20 19 18 39 39 H 1.08995 * 109.46939 * 59.99944 * 21 19 18 40 40 H 1.08996 * 109.47147 * 180.02562 * 21 19 18 41 41 H 1.08999 * 109.46972 * 300.00088 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2566 2.0537 1.1147 5 16 2.8036 3.5991 0.6663 6 6 2.6957 3.2972 -1.0266 7 7 3.0032 4.1658 -2.0582 8 6 2.8500 3.7340 -3.4496 9 6 1.4581 4.0603 -3.9265 10 1 0.7579 4.5417 -3.2598 11 6 1.0790 3.7454 -5.2141 12 7 -0.1355 4.0306 -5.6304 13 14 2.2904 2.9135 -6.3674 14 1 2.1670 1.4395 -6.2355 15 1 1.9945 3.3117 -7.7671 16 1 3.6724 3.3280 -6.0164 17 6 3.4821 5.5177 -1.7591 18 6 5.0085 5.5067 -1.6554 19 6 5.5087 6.9186 -1.3437 20 6 7.0215 6.8852 -1.1168 21 6 5.1897 7.8439 -2.5197 22 7 2.2581 2.0596 -1.1246 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.5785 4.2521 -4.0731 29 1 3.0140 2.6585 -3.5165 30 1 -0.4024 3.8087 -6.5362 31 1 3.1771 6.1957 -2.5562 32 1 3.0561 5.8532 -0.8137 33 1 5.3136 4.8286 -0.8583 34 1 5.4346 5.1710 -2.6008 35 1 5.0147 7.2890 -0.4455 36 1 7.5155 6.5147 -2.0150 37 1 7.3778 7.8910 -0.8943 38 1 7.2488 6.2260 -0.2790 39 1 4.1121 7.8676 -2.6813 40 1 5.5465 8.8496 -2.2978 41 1 5.6837 7.4734 -3.4179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092686676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 31.105595 kcal Electronic energy + Delta-G solvation = -20451.551006 eV Core-core repulsion = 17492.559596 eV Total energy + Delta-G solvation = -2958.991410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.63007 -37.82760 -35.71605 -33.01993 -32.56819 -30.76052 -29.58561 -27.71933 -27.15703 -25.06976 -23.39217 -23.12962 -20.60320 -19.93944 -18.83623 -18.21704 -17.02494 -16.36591 -15.43950 -14.93876 -14.85098 -14.40541 -14.05570 -13.92939 -13.71444 -13.48268 -12.87193 -12.55577 -12.50484 -12.21805 -12.03238 -11.85739 -11.78942 -11.44868 -11.32564 -11.07173 -10.97998 -10.81672 -10.75763 -10.66842 -10.60788 -10.53614 -10.36112 -9.95794 -9.56476 -8.93261 -8.79089 -8.69783 -7.25546 -6.19322 -4.20052 1.35978 1.57205 2.35872 3.19129 3.23545 3.27398 3.30505 3.36854 4.28855 4.64175 4.81886 4.87284 4.93142 5.12196 5.20572 5.32934 5.45677 5.52065 5.57226 5.61334 5.65383 5.65881 5.79261 5.88233 5.99563 6.00567 6.02775 6.08047 6.16006 6.24702 6.29306 6.36883 6.39478 6.48314 6.53768 6.72132 7.33444 7.42470 7.59437 8.33971 8.47520 8.83295 9.38651 10.93610 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.008201 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.053935 B = 3413.498760 C = 5895.676105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 C 0.312 3.688 4 N -0.522 5.522 5 S 0.110 5.890 6 C 0.373 3.627 7 N -0.525 5.525 8 C 0.223 3.777 9 C -0.533 4.533 10 H 0.076 0.924 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.117 3.883 18 C -0.136 4.136 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.153 4.153 22 N -0.577 5.577 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 1.649 8.664 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C 0.022 3.978 4 N -0.356 5.356 5 S 0.245 5.755 6 C -0.005 4.005 7 N -0.237 5.237 8 C 0.101 3.899 9 C -0.572 4.572 10 H 0.094 0.906 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.700 3.300 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.191 1.191 17 C -0.006 4.006 18 C -0.175 4.175 19 C -0.112 4.112 20 C -0.203 4.203 21 C -0.210 4.210 22 N -0.313 5.313 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.124 2.033 9.543 14.060 hybrid contribution 0.227 -0.829 -1.639 1.851 sum 10.351 1.203 7.904 13.079 Atomic orbital electron populations 1.21690 0.93667 1.02004 1.02882 1.20107 0.96682 0.87183 1.03590 1.23174 0.93378 0.98591 0.82663 1.77486 1.32213 1.00860 1.25072 1.84557 1.68519 1.21701 1.00716 1.25210 0.91134 0.90482 0.93696 1.46480 1.62476 1.10264 1.04475 1.19940 0.98300 0.96598 0.75017 1.21238 0.96394 1.41046 0.98477 0.90621 1.24802 0.95099 0.94957 0.97701 1.69885 1.17903 1.47041 1.18153 0.86902 0.81801 0.80754 0.80553 1.19730 1.20930 1.19071 1.21823 0.93713 0.82328 1.02743 1.22132 0.95556 0.97028 1.02763 1.21042 0.96196 0.94910 0.99020 1.21823 0.95417 1.01439 1.01613 1.21931 1.02226 0.98816 0.98010 1.67327 1.28762 1.06685 1.28506 0.91808 0.92585 0.91598 0.89181 0.89842 0.94507 0.94003 0.92387 0.88119 0.90974 0.91679 0.91061 0.90972 0.92726 0.92775 0.92762 0.91949 0.92878 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.03 -0.50 6.47 -27.88 -0.18 -0.68 16 3 C 0.31 5.97 6.82 -159.03 -1.08 4.88 16 4 N -0.52 -9.98 12.15 29.54 0.36 -9.62 16 5 S 0.11 1.97 22.61 -107.50 -2.43 -0.46 16 6 C 0.37 7.60 7.94 -86.35 -0.69 6.92 16 7 N -0.52 -10.40 2.55 -176.55 -0.45 -10.85 16 8 C 0.22 5.09 4.40 -5.19 -0.02 5.07 16 9 C -0.53 -14.48 9.94 -34.44 -0.34 -14.82 16 10 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 13 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 17 C 0.12 1.82 5.21 -4.04 -0.02 1.79 16 18 C -0.14 -1.74 5.01 -26.73 -0.13 -1.88 16 19 C -0.09 -0.97 2.92 -90.62 -0.26 -1.23 16 20 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 21 C -0.15 -1.58 8.95 37.16 0.33 -1.24 16 22 N -0.58 -12.45 10.06 -14.57 -0.15 -12.59 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 29 H 0.04 1.01 7.16 -51.93 -0.37 0.64 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.10 1.58 6.49 -51.93 -0.34 1.24 16 32 H 0.07 1.04 7.23 -51.93 -0.38 0.66 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -30.88 348.54 -9.98 -40.86 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.88 Total: -0.92 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.79 Total: -1.79 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.54 Total: -58.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.43 Total: -0.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -9.98 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092686676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.969 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds