Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47231 * 2 1 4 4 N 1.30133 * 121.06266 * 90.02061 * 3 2 1 5 5 S 1.69948 * 105.76450 * 179.97438 * 4 3 2 6 6 C 1.72296 * 94.57561 * 0.02562 * 5 4 3 7 7 N 1.38322 * 127.50525 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00114 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47088 * 89.99756 * 8 7 6 10 10 H 1.08001 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00153 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00182 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99828 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47089 * 89.99989 * 13 11 9 15 15 H 1.48502 * 109.46721 * 209.99684 * 13 11 9 16 16 H 1.48497 * 109.46981 * 329.99631 * 13 11 9 17 17 C 1.46500 * 119.99461 * 359.97135 * 7 6 5 18 18 C 1.53001 * 109.47056 * 90.00508 * 17 7 6 19 19 C 1.52998 * 109.47244 * 179.97438 * 18 17 7 20 20 C 1.53002 * 109.47135 * 174.99762 * 19 18 17 21 21 C 1.52999 * 109.47271 * 294.99853 * 19 18 17 22 22 N 1.31288 * 121.06452 * 270.00558 * 3 2 1 23 23 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46760 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.46832 * 59.99835 * 1 2 3 26 26 H 1.08994 * 109.47173 * 240.00525 * 2 1 3 27 27 H 1.09000 * 109.47548 * 119.99957 * 2 1 3 28 28 H 1.08996 * 109.47110 * 210.00010 * 8 7 6 29 29 H 1.09001 * 109.47457 * 330.00424 * 8 7 6 30 30 H 0.97002 * 120.00047 * 180.02562 * 12 11 9 31 31 H 1.08998 * 109.47013 * 209.99644 * 17 7 6 32 32 H 1.08995 * 109.47461 * 330.00343 * 17 7 6 33 33 H 1.09003 * 109.46944 * 299.99612 * 18 17 7 34 34 H 1.08999 * 109.47403 * 59.98936 * 18 17 7 35 35 H 1.09000 * 109.46687 * 54.99948 * 19 18 17 36 36 H 1.08999 * 109.47045 * 59.99951 * 20 19 18 37 37 H 1.08996 * 109.47374 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47087 * 300.00256 * 20 19 18 39 39 H 1.08995 * 109.46939 * 59.99944 * 21 19 18 40 40 H 1.08996 * 109.47147 * 180.02562 * 21 19 18 41 41 H 1.08999 * 109.46972 * 300.00088 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2566 2.0537 1.1147 5 16 2.8036 3.5991 0.6663 6 6 2.6957 3.2972 -1.0266 7 7 3.0032 4.1658 -2.0582 8 6 2.8500 3.7340 -3.4496 9 6 1.4581 4.0603 -3.9265 10 1 0.7579 4.5417 -3.2598 11 6 1.0790 3.7454 -5.2141 12 7 -0.1355 4.0306 -5.6304 13 14 2.2904 2.9135 -6.3674 14 1 2.1670 1.4395 -6.2355 15 1 1.9945 3.3117 -7.7671 16 1 3.6724 3.3280 -6.0164 17 6 3.4821 5.5177 -1.7591 18 6 5.0085 5.5067 -1.6554 19 6 5.5087 6.9186 -1.3437 20 6 7.0215 6.8852 -1.1168 21 6 5.1897 7.8439 -2.5197 22 7 2.2581 2.0596 -1.1246 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.5785 4.2521 -4.0731 29 1 3.0140 2.6585 -3.5165 30 1 -0.4024 3.8087 -6.5362 31 1 3.1771 6.1957 -2.5562 32 1 3.0561 5.8532 -0.8137 33 1 5.3136 4.8286 -0.8583 34 1 5.4346 5.1710 -2.6008 35 1 5.0147 7.2890 -0.4455 36 1 7.5155 6.5147 -2.0150 37 1 7.3778 7.8910 -0.8943 38 1 7.2488 6.2260 -0.2790 39 1 4.1121 7.8676 -2.6813 40 1 5.5465 8.8496 -2.2978 41 1 5.6837 7.4734 -3.4179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092686676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 14.354325 kcal Electronic energy + Delta-G solvation = -20452.277395 eV Core-core repulsion = 17492.559596 eV Total energy + Delta-G solvation = -2959.717799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12977 -39.12717 -36.87537 -34.84683 -34.07294 -32.17459 -31.15632 -29.25459 -27.96023 -26.43946 -24.96515 -24.53343 -22.04082 -20.87332 -20.38542 -19.66413 -19.10420 -17.86727 -16.73995 -16.60490 -16.06167 -15.76882 -15.56106 -15.06529 -14.90052 -14.72994 -14.45531 -14.05256 -13.67922 -13.53981 -13.34618 -13.07374 -13.01745 -12.81571 -12.63427 -12.48288 -12.33113 -12.21743 -12.09451 -11.96387 -11.84755 -11.67760 -11.57192 -11.46275 -11.44482 -10.83431 -10.47443 -10.27670 -8.79211 -8.33911 -6.40350 -0.16606 0.05158 0.90385 1.34276 1.37629 1.45076 1.78670 1.89124 2.30220 3.00716 3.25274 3.81242 3.86898 4.03985 4.12783 4.17328 4.34170 4.36670 4.41375 4.56477 4.59579 4.73716 4.75455 4.82109 4.84189 4.92363 4.94520 5.01001 5.06532 5.10836 5.14235 5.14664 5.30943 5.33930 5.39411 5.49567 5.53434 5.71364 6.00308 6.24921 6.60931 6.96517 7.23032 8.82702 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.008201 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.053935 B = 3413.498760 C = 5895.676105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C 0.303 3.697 4 N -0.536 5.536 5 S 0.160 5.840 6 C 0.350 3.650 7 N -0.532 5.532 8 C 0.236 3.764 9 C -0.534 4.534 10 H 0.027 0.973 11 C 0.019 3.981 12 N -0.942 5.942 13 Si 0.942 3.058 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.237 1.237 17 C 0.113 3.887 18 C -0.125 4.125 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.153 4.153 22 N -0.613 5.613 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.269 0.731 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 1.323 9.277 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C 0.014 3.986 4 N -0.371 5.371 5 S 0.295 5.705 6 C -0.028 4.028 7 N -0.244 5.244 8 C 0.113 3.887 9 C -0.573 4.573 10 H 0.045 0.955 11 C -0.179 4.179 12 N -0.582 5.582 13 Si 0.765 3.235 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.160 1.160 17 C -0.009 4.009 18 C -0.164 4.164 19 C -0.107 4.107 20 C -0.200 4.200 21 C -0.210 4.210 22 N -0.350 5.350 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.355 1.733 10.197 16.113 hybrid contribution -0.551 -0.676 -1.703 1.913 sum 11.804 1.058 8.493 14.580 Atomic orbital electron populations 1.21646 0.93110 1.03657 1.01118 1.20319 0.97007 0.85198 1.05062 1.23743 0.92915 0.99939 0.81997 1.77411 1.32558 1.01698 1.25452 1.84267 1.67584 1.20724 0.97938 1.25473 0.91490 0.90717 0.95131 1.46518 1.62885 1.11575 1.03448 1.19587 0.95844 0.96175 0.77097 1.21403 0.97773 1.40193 0.97897 0.95480 1.25739 0.96991 0.95587 0.99621 1.70042 1.20365 1.48899 1.18885 0.85801 0.80527 0.79193 0.77992 1.19742 1.20393 1.16022 1.22073 0.95667 0.80202 1.02937 1.22054 0.93157 0.98713 1.02489 1.21036 0.97206 0.93177 0.99330 1.21799 0.94164 1.02385 1.01674 1.21934 1.01477 0.99716 0.97888 1.67382 1.29606 1.07705 1.30345 0.88459 0.92882 0.94692 0.88700 0.87273 0.92573 0.94964 0.92230 0.88657 0.90046 0.91761 0.91591 0.90179 0.92841 0.91405 0.92544 0.93097 0.91328 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.89 71.98 0.71 -3.03 16 2 C -0.03 -0.97 6.47 29.85 0.19 -0.78 16 3 C 0.30 11.45 6.82 139.39 0.95 12.40 16 4 N -0.54 -19.95 12.15 -60.44 -0.73 -20.69 16 5 S 0.16 5.53 22.61 -56.49 -1.28 4.25 16 6 C 0.35 14.23 7.94 178.86 1.42 15.65 16 7 N -0.53 -21.07 2.55 -712.48 -1.82 -22.89 16 8 C 0.24 10.75 4.40 85.64 0.38 11.13 16 9 C -0.53 -29.83 9.94 25.60 0.25 -29.58 16 10 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 11 C 0.02 1.09 5.47 84.65 0.46 1.56 16 12 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 13 Si 0.94 42.11 27.47 68.60 1.88 43.99 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 17 C 0.11 3.44 5.21 86.38 0.45 3.89 16 18 C -0.12 -3.03 5.01 30.59 0.15 -2.87 16 19 C -0.09 -1.66 2.92 -10.79 -0.03 -1.69 16 20 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 21 C -0.15 -2.90 8.95 71.98 0.64 -2.25 16 22 N -0.61 -26.57 10.06 -200.02 -2.01 -28.59 16 23 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.06 2.35 7.13 -2.39 -0.02 2.33 16 29 H 0.03 1.54 7.16 -2.39 -0.02 1.52 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.10 2.99 6.49 -2.39 -0.02 2.98 16 32 H 0.08 2.29 7.23 -2.39 -0.02 2.27 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.07 6.56 -2.39 -0.02 1.06 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.28 348.54 3.53 -64.75 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.94 Total: 13.75 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.25 Total: 2.80 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -4.26 Total: -129.55 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.28 Total: 4.25 kcal Total: -68.28 3.53 -64.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092686676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.105 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds