Wall clock time and date at job start Tue Mar 31 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46793 * 2 1 4 4 H 1.08995 * 109.47140 * 54.42859 * 3 2 1 5 5 N 1.46904 * 109.46899 * 294.42815 * 3 2 1 6 6 C 1.46896 * 111.00087 * 153.48511 * 5 3 2 7 7 C 1.52997 * 109.47429 * 174.78166 * 6 5 3 8 8 C 1.52998 * 109.47319 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99588 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00107 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99947 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47447 * 89.99911 * 13 11 9 15 15 H 1.48495 * 109.47316 * 210.00173 * 13 11 9 16 16 H 1.48506 * 109.47350 * 330.00093 * 13 11 9 17 17 C 1.50695 * 109.46870 * 174.43081 * 3 2 1 18 18 C 1.38208 * 120.00562 * 99.72160 * 17 3 2 19 19 C 1.38427 * 120.00414 * 179.76821 * 18 17 3 20 20 F 1.35100 * 120.00229 * 180.27330 * 19 18 17 21 21 C 1.38471 * 119.99661 * 0.52337 * 19 18 17 22 22 C 1.38164 * 120.00149 * 359.73134 * 21 19 18 23 23 C 1.38429 * 119.99977 * 279.99715 * 17 3 2 24 24 F 1.35102 * 119.99655 * 359.97438 * 23 17 3 25 25 H 1.09003 * 109.47034 * 186.15586 * 1 2 3 26 26 H 1.09005 * 109.47485 * 306.15980 * 1 2 3 27 27 H 1.09002 * 109.47469 * 66.16204 * 1 2 3 28 28 H 1.08995 * 109.47098 * 239.99886 * 2 1 3 29 29 H 1.08993 * 109.47199 * 119.99412 * 2 1 3 30 30 H 1.00898 * 111.00110 * 29.52661 * 5 3 2 31 31 H 1.08994 * 109.46939 * 294.78674 * 6 5 3 32 32 H 1.09000 * 109.47052 * 54.78556 * 6 5 3 33 33 H 1.09003 * 109.47242 * 300.00276 * 7 6 5 34 34 H 1.09000 * 109.46686 * 60.00166 * 7 6 5 35 35 H 1.09003 * 109.46907 * 300.00136 * 8 7 6 36 36 H 1.08991 * 109.47214 * 60.00332 * 8 7 6 37 37 H 0.96995 * 119.99692 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.99134 * 0.02562 * 18 17 3 39 39 H 1.08000 * 119.99577 * 179.70239 * 21 19 18 40 40 H 1.08001 * 119.99591 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5974 1.9844 0.8359 5 7 1.6630 2.0951 -1.2611 6 6 1.5475 3.5492 -1.0874 7 6 1.2828 4.2055 -2.4439 8 6 1.1631 5.7200 -2.2631 9 6 0.9018 6.3664 -3.5992 10 1 0.8288 5.7577 -4.4884 11 6 0.7558 7.7346 -3.6863 12 7 0.5283 8.2987 -4.8524 13 14 0.8813 8.7871 -2.1483 14 1 2.2932 9.2001 -1.9448 15 1 0.0301 9.9939 -2.3034 16 1 0.4205 8.0041 -0.9736 17 6 3.5405 1.4449 0.1379 18 6 4.3370 1.6097 -0.9795 19 6 5.7154 1.6166 -0.8522 20 9 6.4938 1.7833 -1.9437 21 6 6.2964 1.4474 0.3933 22 6 5.5003 1.2773 1.5097 23 6 4.1214 1.2761 1.3830 24 9 3.3429 1.1098 2.4746 25 1 -0.3633 -1.0218 0.1102 26 1 -0.3634 0.6064 0.8297 27 1 -0.3634 0.4153 -0.9400 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.8077 1.7057 -1.6282 31 1 0.7227 3.7698 -0.4099 32 1 2.4753 3.9401 -0.6696 33 1 2.1077 3.9849 -3.1214 34 1 0.3550 3.8146 -2.8617 35 1 0.3384 5.9409 -1.5854 36 1 2.0911 6.1105 -1.8455 37 1 0.4253 9.2612 -4.9136 38 1 3.8838 1.7374 -1.9515 39 1 7.3719 1.4480 0.4920 40 1 5.9536 1.1450 2.4810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118963353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:19 Heat of formation + Delta-G solvation = -85.580078 kcal Electronic energy + Delta-G solvation = -22018.139376 eV Core-core repulsion = 18467.954958 eV Total energy + Delta-G solvation = -3550.184418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.08739 -48.95071 -39.47806 -37.19818 -34.49190 -32.56033 -31.56471 -30.58094 -30.11074 -27.04902 -25.43902 -23.17072 -22.56926 -22.12443 -20.76587 -19.92293 -17.87412 -17.38014 -17.24130 -16.73818 -15.99926 -15.62215 -15.42593 -15.23876 -14.60789 -14.46792 -14.24224 -14.16673 -13.91204 -13.48314 -13.19411 -12.96260 -12.62682 -12.56135 -12.30860 -12.06058 -11.87884 -11.65071 -11.32021 -11.11355 -11.03608 -10.84074 -10.76837 -9.96286 -9.73229 -9.59642 -9.20424 -9.15728 -8.64866 -8.52232 -8.42290 -6.02587 -4.00272 0.79151 0.92062 3.21901 3.31691 3.38864 3.42343 3.94003 4.04019 4.14734 4.36365 4.46621 4.63326 4.74148 4.82450 4.91346 5.04165 5.14725 5.31420 5.36749 5.47887 5.58853 5.64000 5.71780 5.75169 5.78101 5.85881 5.89341 5.97572 6.07504 6.12375 6.15164 6.53469 6.55271 6.67367 6.91693 7.11220 7.34016 7.41007 7.50213 7.81682 8.56395 9.02946 9.60202 11.11032 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004195 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.809912 B = 6672.314991 C = 7408.329093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C 0.124 3.876 4 H 0.061 0.939 5 N -0.684 5.684 6 C 0.055 3.945 7 C -0.097 4.097 8 C -0.013 4.013 9 C -0.518 4.518 10 H 0.072 0.928 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.267 1.267 17 C -0.078 4.078 18 C -0.093 4.093 19 C 0.086 3.914 20 F -0.135 7.135 21 C -0.133 4.133 22 C -0.130 4.130 23 C 0.085 3.915 24 F -0.137 7.137 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.347 0.653 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.013 0.987 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.163 0.837 39 H 0.142 0.858 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -18.804 14.093 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.079 0.921 5 N -0.317 5.317 6 C -0.074 4.074 7 C -0.135 4.135 8 C -0.051 4.051 9 C -0.556 4.556 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.080 4.080 18 C -0.112 4.112 19 C 0.066 3.934 20 F -0.114 7.114 21 C -0.151 4.151 22 C -0.149 4.149 23 C 0.065 3.935 24 F -0.115 7.115 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.159 0.841 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.938 -18.599 13.765 24.462 hybrid contribution -0.651 0.877 1.263 1.669 sum 7.287 -17.722 15.028 24.352 Atomic orbital electron populations 1.21833 0.95202 1.02143 1.02179 1.21686 0.96187 0.94942 1.03093 1.20337 0.89717 0.95496 0.93042 0.92072 1.60455 1.40266 1.05166 1.25834 1.22231 1.00066 0.85807 0.99254 1.21421 1.01131 0.96920 0.94057 1.19543 0.96070 0.91670 0.97828 1.21142 1.48673 0.92391 0.93422 0.91007 1.25032 0.94647 0.98041 0.95800 1.69917 1.49866 1.10799 1.23783 0.86783 0.78276 0.79964 0.84274 1.20299 1.21415 1.19124 1.19797 0.96835 1.00492 0.90865 1.21141 0.90458 0.98257 1.01343 1.17790 0.88992 1.03277 0.83315 1.91528 1.74434 1.92900 1.52508 1.20962 1.01079 1.02423 0.90683 1.20870 0.91333 1.02807 0.99896 1.17551 0.88638 1.04491 0.82811 1.91488 1.74686 1.92970 1.52380 0.92151 0.92608 0.92161 0.90596 0.91256 0.83224 0.95439 0.91565 0.91955 0.92915 0.96876 0.97120 0.92779 0.81979 0.84058 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.64 37.16 0.36 -0.96 16 2 C -0.12 -1.13 5.48 -26.73 -0.15 -1.28 16 3 C 0.12 1.42 1.97 -68.86 -0.14 1.29 16 4 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 5 N -0.68 -8.75 4.90 -107.95 -0.53 -9.28 16 6 C 0.05 0.86 5.45 -3.83 -0.02 0.84 16 7 C -0.10 -1.89 5.46 -26.73 -0.15 -2.04 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 9 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 10 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 13 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 17 C -0.08 -0.93 4.86 -104.57 -0.51 -1.44 16 18 C -0.09 -1.16 9.31 -39.52 -0.37 -1.53 16 19 C 0.09 1.02 7.30 -39.43 -0.29 0.73 16 20 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 21 C -0.13 -1.29 10.02 -39.52 -0.40 -1.69 16 22 C -0.13 -1.23 10.02 -39.52 -0.40 -1.63 16 23 C 0.08 0.95 7.24 -39.43 -0.29 0.66 16 24 F -0.14 -1.57 16.66 2.25 0.04 -1.54 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.51 6.67 -51.93 -0.35 0.16 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.35 4.08 6.64 -39.29 -0.26 3.82 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.16 2.15 7.14 -52.48 -0.37 1.77 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -30.67 337.17 -8.09 -38.77 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.95 Total: -0.33 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.88 Total: -20.89 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.24 Total: -36.73 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.67 -8.09 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118963353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.814 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds