Wall clock time and date at job start Tue Mar 31 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46793 * 2 1 4 4 H 1.08995 * 109.47140 * 54.42859 * 3 2 1 5 5 N 1.46904 * 109.46899 * 294.42815 * 3 2 1 6 6 C 1.46896 * 111.00087 * 153.48511 * 5 3 2 7 7 C 1.52997 * 109.47429 * 174.78166 * 6 5 3 8 8 C 1.52998 * 109.47319 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99588 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00107 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99947 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47447 * 89.99911 * 13 11 9 15 15 H 1.48495 * 109.47316 * 210.00173 * 13 11 9 16 16 H 1.48506 * 109.47350 * 330.00093 * 13 11 9 17 17 C 1.50695 * 109.46870 * 174.43081 * 3 2 1 18 18 C 1.38208 * 120.00562 * 99.72160 * 17 3 2 19 19 C 1.38427 * 120.00414 * 179.76821 * 18 17 3 20 20 F 1.35100 * 120.00229 * 180.27330 * 19 18 17 21 21 C 1.38471 * 119.99661 * 0.52337 * 19 18 17 22 22 C 1.38164 * 120.00149 * 359.73134 * 21 19 18 23 23 C 1.38429 * 119.99977 * 279.99715 * 17 3 2 24 24 F 1.35102 * 119.99655 * 359.97438 * 23 17 3 25 25 H 1.09003 * 109.47034 * 186.15586 * 1 2 3 26 26 H 1.09005 * 109.47485 * 306.15980 * 1 2 3 27 27 H 1.09002 * 109.47469 * 66.16204 * 1 2 3 28 28 H 1.08995 * 109.47098 * 239.99886 * 2 1 3 29 29 H 1.08993 * 109.47199 * 119.99412 * 2 1 3 30 30 H 1.00898 * 111.00110 * 29.52661 * 5 3 2 31 31 H 1.08994 * 109.46939 * 294.78674 * 6 5 3 32 32 H 1.09000 * 109.47052 * 54.78556 * 6 5 3 33 33 H 1.09003 * 109.47242 * 300.00276 * 7 6 5 34 34 H 1.09000 * 109.46686 * 60.00166 * 7 6 5 35 35 H 1.09003 * 109.46907 * 300.00136 * 8 7 6 36 36 H 1.08991 * 109.47214 * 60.00332 * 8 7 6 37 37 H 0.96995 * 119.99692 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.99134 * 0.02562 * 18 17 3 39 39 H 1.08000 * 119.99577 * 179.70239 * 21 19 18 40 40 H 1.08001 * 119.99591 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5974 1.9844 0.8359 5 7 1.6630 2.0951 -1.2611 6 6 1.5475 3.5492 -1.0874 7 6 1.2828 4.2055 -2.4439 8 6 1.1631 5.7200 -2.2631 9 6 0.9018 6.3664 -3.5992 10 1 0.8288 5.7577 -4.4884 11 6 0.7558 7.7346 -3.6863 12 7 0.5283 8.2987 -4.8524 13 14 0.8813 8.7871 -2.1483 14 1 2.2932 9.2001 -1.9448 15 1 0.0301 9.9939 -2.3034 16 1 0.4205 8.0041 -0.9736 17 6 3.5405 1.4449 0.1379 18 6 4.3370 1.6097 -0.9795 19 6 5.7154 1.6166 -0.8522 20 9 6.4938 1.7833 -1.9437 21 6 6.2964 1.4474 0.3933 22 6 5.5003 1.2773 1.5097 23 6 4.1214 1.2761 1.3830 24 9 3.3429 1.1098 2.4746 25 1 -0.3633 -1.0218 0.1102 26 1 -0.3634 0.6064 0.8297 27 1 -0.3634 0.4153 -0.9400 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.8077 1.7057 -1.6282 31 1 0.7227 3.7698 -0.4099 32 1 2.4753 3.9401 -0.6696 33 1 2.1077 3.9849 -3.1214 34 1 0.3550 3.8146 -2.8617 35 1 0.3384 5.9409 -1.5854 36 1 2.0911 6.1105 -1.8455 37 1 0.4253 9.2612 -4.9136 38 1 3.8838 1.7374 -1.9515 39 1 7.3719 1.4480 0.4920 40 1 5.9536 1.1450 2.4810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118963353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:18 Heat of formation + Delta-G solvation = -102.418249 kcal Electronic energy + Delta-G solvation = -22018.869534 eV Core-core repulsion = 18467.954958 eV Total energy + Delta-G solvation = -3550.914576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94505 -49.90053 -40.36252 -38.19511 -36.08520 -34.36890 -32.47358 -32.03702 -30.95780 -28.52466 -26.61826 -24.22578 -23.57570 -23.38244 -22.00912 -21.28961 -18.91474 -18.72710 -18.26294 -18.13989 -16.94296 -16.72968 -16.45924 -16.34147 -15.98611 -15.59990 -15.45427 -15.33899 -14.87175 -14.72041 -14.31451 -14.05616 -14.01585 -13.71171 -13.55320 -13.34618 -12.98196 -12.76247 -12.63058 -12.54699 -12.23857 -11.86129 -11.80384 -11.74081 -11.53307 -11.41429 -11.25106 -10.76909 -10.04230 -9.52448 -9.47976 -8.29826 -6.33797 -0.06643 0.09833 1.34905 1.36255 1.48327 2.35470 2.37839 2.99055 3.05567 3.18483 3.25370 3.53107 3.79929 3.94013 4.03940 4.10141 4.20761 4.24965 4.34588 4.38970 4.58684 4.66057 4.77438 4.83003 4.87594 4.93216 4.97244 5.05734 5.08369 5.09234 5.13053 5.16275 5.24313 5.36697 5.52201 5.60719 5.66128 5.82331 6.01593 6.29133 6.44645 6.74522 7.30827 8.87253 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004195 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.809912 B = 6672.314991 C = 7408.329093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.127 3.873 4 H 0.057 0.943 5 N -0.683 5.683 6 C 0.071 3.929 7 C -0.088 4.088 8 C -0.011 4.011 9 C -0.532 4.532 10 H 0.031 0.969 11 C 0.003 3.997 12 N -0.952 5.952 13 Si 0.951 3.049 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.246 1.246 17 C -0.088 4.088 18 C -0.107 4.107 19 C 0.068 3.932 20 F -0.147 7.147 21 C -0.123 4.123 22 C -0.120 4.120 23 C 0.077 3.923 24 F -0.139 7.139 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.354 0.646 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 -19.516 17.079 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.075 0.925 5 N -0.317 5.317 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.049 4.049 9 C -0.570 4.570 10 H 0.049 0.951 11 C -0.193 4.193 12 N -0.593 5.593 13 Si 0.774 3.226 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.170 1.170 17 C -0.090 4.090 18 C -0.126 4.126 19 C 0.049 3.951 20 F -0.125 7.125 21 C -0.142 4.142 22 C -0.138 4.138 23 C 0.057 3.943 24 F -0.117 7.117 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.175 0.825 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.165 0.835 39 H 0.186 0.814 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.633 -19.343 16.756 27.008 hybrid contribution -0.852 1.030 0.255 1.360 sum 7.781 -18.313 17.011 26.178 Atomic orbital electron populations 1.21828 0.94413 1.02977 1.01979 1.21640 0.96785 0.93461 1.03341 1.20369 0.89726 0.96454 0.91782 0.92523 1.60338 1.40732 1.03594 1.27028 1.21901 0.99972 0.87349 0.96583 1.21230 1.00613 0.94544 0.96204 1.19492 0.96189 0.94185 0.95003 1.21509 1.48427 0.92625 0.94435 0.95091 1.26034 0.94174 0.99642 0.99499 1.70074 1.51331 1.11410 1.26521 0.85646 0.78790 0.78004 0.80131 1.19287 1.20838 1.16973 1.19834 0.96902 1.01062 0.91153 1.21038 0.91014 0.99578 1.00982 1.18039 0.88861 1.04306 0.83943 1.91496 1.74623 1.93142 1.53283 1.21252 1.02534 1.00821 0.89565 1.21208 0.90510 1.00995 1.01110 1.17704 0.89418 1.04735 0.82405 1.91484 1.74895 1.93014 1.52325 0.90827 0.92790 0.92361 0.90602 0.90690 0.82469 0.94758 0.92045 0.93243 0.93071 0.96207 0.96679 0.92505 0.83530 0.81354 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.64 71.98 0.69 -1.64 16 2 C -0.11 -1.96 5.48 30.60 0.17 -1.80 16 3 C 0.13 2.74 1.97 44.17 0.09 2.83 16 4 H 0.06 1.30 7.64 -2.39 -0.02 1.28 16 5 N -0.68 -16.97 4.90 -495.46 -2.43 -19.39 16 6 C 0.07 2.16 5.45 86.30 0.47 2.63 16 7 C -0.09 -3.41 5.46 30.59 0.17 -3.25 16 8 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 9 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 10 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 11 C 0.00 0.18 5.47 84.65 0.46 0.64 16 12 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 13 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.25 -10.77 6.54 99.48 0.65 -10.11 16 17 C -0.09 -1.98 4.86 -19.83 -0.10 -2.08 16 18 C -0.11 -2.63 9.31 22.31 0.21 -2.42 16 19 C 0.07 1.56 7.30 22.37 0.16 1.72 16 20 F -0.15 -3.80 17.27 44.97 0.78 -3.02 16 21 C -0.12 -2.09 10.02 22.31 0.22 -1.86 16 22 C -0.12 -1.90 10.02 22.31 0.22 -1.68 16 23 C 0.08 1.56 7.24 22.37 0.16 1.72 16 24 F -0.14 -2.87 16.66 44.97 0.75 -2.12 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.90 6.67 -2.39 -0.02 0.88 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.35 7.99 6.64 -89.70 -0.60 7.39 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.94 7.97 -2.39 -0.02 1.93 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 36 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.15 3.99 7.14 -2.91 -0.02 3.97 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -67.12 337.17 4.97 -62.16 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.38 Total: 12.76 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 3.30 Total: -36.70 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -2.13 Total: -79.95 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.53 Total: -5.15 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -67.12 4.97 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118963353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.260 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds