Wall clock time and date at job start Tue Mar 31 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 C 1.52995 * 109.46982 * 239.99867 * 2 1 3 5 5 C 1.50704 * 109.47010 * 60.00250 * 4 2 1 6 6 H 1.07999 * 120.00252 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47473 * 90.00230 * 9 7 5 11 11 H 1.48508 * 109.47155 * 210.00233 * 9 7 5 12 12 H 1.48504 * 109.46944 * 330.00138 * 9 7 5 13 13 C 1.53001 * 109.46681 * 120.00095 * 2 1 3 14 14 N 1.46900 * 109.47174 * 299.99712 * 13 2 1 15 15 C 1.46894 * 111.00025 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47384 * 179.97438 * 15 14 13 17 17 C 1.38224 * 119.99213 * 260.02567 * 16 15 14 18 18 C 1.38187 * 120.05295 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02416 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.00943 * 179.97438 * 19 18 17 21 21 C 1.38397 * 119.97529 * 359.72914 * 19 18 17 22 22 C 1.38445 * 119.94721 * 0.52975 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.74070 * 22 21 19 24 24 H 1.08994 * 109.47413 * 300.00341 * 1 2 3 25 25 H 1.08999 * 109.46767 * 60.00065 * 1 2 3 26 26 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46920 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46789 * 300.00204 * 3 2 1 29 29 H 1.09003 * 109.46768 * 59.99822 * 3 2 1 30 30 H 1.09000 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47813 * 300.00229 * 4 2 1 32 32 H 0.97002 * 120.00590 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46758 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47397 * 59.99944 * 13 2 1 35 35 H 1.00905 * 110.99897 * 56.05125 * 14 13 2 36 36 H 1.09004 * 109.47067 * 59.99889 * 15 14 13 37 37 H 1.09004 * 109.47385 * 300.00243 * 15 14 13 38 38 H 1.08009 * 119.97191 * 359.97414 * 17 16 15 39 39 H 1.07999 * 119.98601 * 180.02562 * 18 17 16 40 40 H 1.07999 * 120.03007 * 180.27174 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8526 9 14 1.2492 0.3994 -5.2572 10 1 2.2275 1.4411 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0591 1.0370 -4.9616 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0217 -0.6946 3.6703 16 6 1.5011 0.0428 4.8771 17 6 2.3211 0.9259 5.5541 18 6 1.8449 1.6030 6.6606 19 6 0.5454 1.3971 7.0928 20 9 0.0803 2.0589 8.1748 21 6 -0.2782 0.5169 6.4127 22 6 0.2017 -0.1650 5.3076 23 9 -0.5995 -1.0285 4.6459 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2493 32 1 2.8616 -1.8824 -4.7336 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.5437 0.0413 2.4402 36 1 3.1116 -0.6941 3.6869 37 1 1.6586 -1.7222 3.6873 38 1 3.3349 1.0868 5.2180 39 1 2.4864 2.2931 7.1884 40 1 -1.2931 0.3589 6.7464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135167569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:33 Heat of formation + Delta-G solvation = -85.390391 kcal Electronic energy + Delta-G solvation = -21843.449242 eV Core-core repulsion = 18293.273050 eV Total energy + Delta-G solvation = -3550.176193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.27634 -49.21404 -39.29957 -37.58225 -34.64404 -32.36308 -31.22902 -30.58903 -27.07331 -26.33739 -26.09291 -24.29149 -23.48209 -22.29376 -21.62294 -18.46927 -17.97407 -17.47731 -16.37592 -16.26067 -16.15093 -15.70912 -15.57596 -15.15237 -14.76012 -14.67385 -14.22654 -14.17746 -13.65370 -13.12930 -12.95537 -12.63938 -12.30995 -12.08947 -12.06394 -11.95198 -11.64534 -11.43767 -10.97289 -10.87714 -10.76152 -10.49229 -10.27049 -10.12828 -9.68754 -9.36469 -9.09449 -8.90322 -8.81196 -8.31246 -8.15867 -5.95850 -3.95909 0.65444 0.73308 3.05943 3.33876 3.40439 3.43297 3.58998 4.13870 4.28622 4.32564 4.48975 4.54210 4.70179 4.83966 5.28552 5.40030 5.44783 5.49427 5.58035 5.67104 5.71026 5.75581 5.77151 5.98050 6.04464 6.23646 6.31837 6.47508 6.50452 6.66032 6.78392 6.83306 7.16252 7.20903 7.25655 7.35017 7.58213 7.70694 7.85486 8.04431 8.48813 9.09440 9.66931 11.15846 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.003006 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.489851 B = 9311.163170 C = 9332.403726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.095 3.905 16 C -0.116 4.116 17 C -0.044 4.044 18 C -0.163 4.163 19 C 0.123 3.877 20 F -0.134 7.134 21 C -0.193 4.193 22 C 0.133 3.867 23 F -0.129 7.129 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.340 0.660 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 3.823 21.941 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.313 5.313 15 C -0.034 4.034 16 C -0.118 4.118 17 C -0.062 4.062 18 C -0.182 4.182 19 C 0.104 3.896 20 F -0.113 7.113 21 C -0.212 4.212 22 C 0.113 3.887 23 F -0.107 7.107 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.577 4.148 21.809 22.256 hybrid contribution -1.144 -0.471 -0.826 1.487 sum -2.721 3.677 20.983 21.476 Atomic orbital electron populations 1.21774 0.96057 1.00441 1.00414 1.20638 0.94769 0.96166 0.94317 1.21599 0.99756 0.95770 1.00193 1.19121 0.96102 0.94991 0.90124 1.21238 1.30783 1.11873 0.90603 0.92284 1.25013 0.95421 0.95105 0.99056 1.69963 1.37345 1.23189 1.23292 0.86664 0.79245 0.79423 0.83087 1.20776 1.21401 1.19935 1.22153 0.99872 0.94831 0.89046 1.60691 1.16702 1.53297 1.00582 1.20829 1.00898 0.94560 0.87111 1.20051 0.92529 1.00293 0.98892 1.20829 1.00208 0.92594 0.92607 1.21222 0.94553 1.03157 0.99303 1.17297 0.92796 0.93890 0.85649 1.91525 1.89019 1.78786 1.51954 1.20992 1.02084 1.00445 0.97692 1.17223 0.88530 0.90970 0.91973 1.91544 1.72726 1.66990 1.79438 0.94891 0.91654 0.94042 0.94135 0.92671 0.93926 0.96658 0.96894 0.93166 0.91321 0.95616 0.84061 0.89469 0.94037 0.83627 0.84007 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.17 4.65 -3.82 -0.02 1.15 16 14 N -0.68 -9.69 5.70 -115.06 -0.66 -10.35 16 15 C 0.09 1.11 5.53 -4.98 -0.03 1.08 16 16 C -0.12 -1.23 5.40 -104.55 -0.56 -1.79 16 17 C -0.04 -0.38 9.66 -39.60 -0.38 -0.76 16 18 C -0.16 -1.35 10.02 -39.51 -0.40 -1.75 16 19 C 0.12 1.16 7.30 -39.43 -0.29 0.88 16 20 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 21 C -0.19 -1.87 10.01 -39.45 -0.39 -2.27 16 22 C 0.13 1.46 7.24 -39.43 -0.29 1.17 16 23 F -0.13 -1.57 16.66 2.25 0.04 -1.53 16 24 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 25 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.34 4.95 6.76 -39.29 -0.27 4.68 16 36 H 0.09 0.92 8.00 -51.93 -0.42 0.51 16 37 H 0.04 0.50 7.94 -51.93 -0.41 0.09 16 38 H 0.15 1.01 8.04 -52.48 -0.42 0.58 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -29.30 334.40 -7.91 -37.21 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.75 Total: -0.08 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.33 Total: -19.50 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.08 Total: -36.43 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.30 -7.91 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135167569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.180 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds