Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 120.40269 * 2 1 4 4 C 1.39623 * 118.33250 * 180.19330 * 3 2 1 5 5 N 1.38545 * 120.52739 * 179.79516 * 4 3 2 6 6 C 1.46497 * 120.00379 * 359.72559 * 5 4 3 7 7 H 1.08998 * 109.47467 * 34.99251 * 6 5 4 8 8 C 1.52999 * 109.47593 * 154.99803 * 6 5 4 9 9 C 1.50699 * 109.46768 * 294.99865 * 8 6 5 10 10 H 1.08007 * 120.00346 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00149 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00234 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99663 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47305 * 89.99654 * 13 11 9 15 15 H 1.48498 * 109.46913 * 209.99456 * 13 11 9 16 16 H 1.48502 * 109.47276 * 329.99632 * 13 11 9 17 17 C 1.50706 * 109.46867 * 274.99843 * 6 5 4 18 18 C 1.38234 * 120.00196 * 140.00054 * 17 6 5 19 19 C 1.38235 * 119.99814 * 179.97438 * 18 17 6 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38243 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99618 * 359.97438 * 21 20 19 23 23 N 1.32989 * 118.94145 * 359.52488 * 4 3 2 24 24 C 1.31756 * 120.68241 * 0.24889 * 23 4 3 25 25 N 1.31786 * 121.83270 * 359.97438 * 24 23 4 26 26 H 1.08997 * 109.47338 * 270.28892 * 1 2 3 27 27 H 1.09004 * 109.46924 * 30.28942 * 1 2 3 28 28 H 1.08994 * 109.46648 * 150.28408 * 1 2 3 29 29 H 1.08001 * 120.82897 * 359.96177 * 3 2 1 30 30 H 0.97006 * 119.99652 * 179.71721 * 5 4 3 31 31 H 1.09006 * 109.47087 * 54.99685 * 8 6 5 32 32 H 1.08993 * 109.47597 * 174.99784 * 8 6 5 33 33 H 0.97005 * 119.99792 * 180.02562 * 12 11 9 34 34 H 1.08000 * 119.99516 * 0.24808 * 18 17 6 35 35 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.00235 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.99804 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.07698 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1409 -0.0041 5 7 4.3477 2.3081 -0.0086 6 6 3.6735 3.6087 -0.0150 7 1 2.7583 3.5465 0.5736 8 6 4.5988 4.6659 0.5908 9 6 4.8397 4.3489 2.0443 10 1 4.3792 3.4801 2.4911 11 6 5.6487 5.1675 2.8035 12 7 5.8585 4.8912 4.0721 13 14 6.4457 6.6698 2.0306 14 1 5.5438 7.8402 2.1791 15 1 7.7362 6.9501 2.7097 16 1 6.6906 6.4135 0.5885 17 6 3.3339 3.9914 -1.4326 18 6 2.1229 4.5956 -1.7142 19 6 1.8117 4.9471 -3.0144 20 6 2.7115 4.6948 -4.0329 21 6 3.9230 4.0914 -3.7512 22 6 4.2347 3.7409 -2.4508 23 7 4.2024 -0.0454 0.0017 24 6 3.4956 -1.1573 0.0064 25 7 2.1778 -1.1432 0.0060 26 1 -0.3634 0.0052 1.0276 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3632 -0.8925 -0.5094 29 1 1.6862 2.1380 -0.0006 30 1 5.3167 2.2641 -0.0073 31 1 5.5490 4.6662 0.0567 32 1 4.1337 5.6479 0.5054 33 1 6.4275 5.4674 4.6063 34 1 1.4219 4.7971 -0.9177 35 1 0.8654 5.4188 -3.2343 36 1 2.4682 4.9690 -5.0487 37 1 4.6259 3.8939 -4.5470 38 1 5.1810 3.2692 -2.2308 39 1 4.0105 -2.1066 0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164316232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = 67.398965 kcal Electronic energy + Delta-G solvation = -21640.523840 eV Core-core repulsion = 18547.662278 eV Total energy + Delta-G solvation = -3092.861562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59970 -39.25150 -36.54756 -34.03687 -32.99050 -31.99221 -30.78709 -30.05900 -29.24628 -27.87215 -25.34033 -23.53692 -22.55344 -21.93323 -21.59837 -20.08374 -17.68821 -17.20077 -16.74413 -16.35752 -15.27442 -14.94762 -14.90275 -14.66888 -14.61997 -14.26503 -13.71674 -13.44664 -13.21138 -12.85138 -12.77596 -12.72266 -12.51979 -12.21495 -11.84732 -11.51594 -11.35433 -10.98380 -10.84376 -10.63890 -10.31488 -10.12819 -9.88705 -9.45068 -9.32648 -8.84598 -8.76575 -8.67822 -8.48276 -7.69482 -6.16652 -4.17519 1.41646 1.51543 1.56326 1.78536 3.20783 3.29882 3.31238 3.46632 3.98927 4.26009 4.32468 4.43697 4.72081 4.99691 5.03343 5.10328 5.14924 5.20657 5.28627 5.42143 5.52640 5.61196 5.62706 5.67113 5.76465 5.83847 6.01813 6.06823 6.07883 6.15991 6.23386 6.58498 6.59590 6.63448 6.78019 6.87082 6.98088 7.15340 7.23058 7.56069 7.73896 8.05726 8.35931 8.67765 8.87917 9.43257 10.96038 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.006620 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.027538 B = 4228.810476 C = 5805.278858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.193 3.807 3 C -0.291 4.291 4 C 0.451 3.549 5 N -0.676 5.676 6 C 0.200 3.800 7 H 0.088 0.912 8 C -0.012 4.012 9 C -0.524 4.524 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.895 5.895 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.102 4.102 23 N -0.588 5.588 24 C 0.335 3.665 25 N -0.578 5.578 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.410 0.590 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -3.823 -13.559 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.052 3.948 3 C -0.319 4.319 4 C 0.206 3.794 5 N -0.304 5.304 6 C 0.095 3.905 7 H 0.106 0.894 8 C -0.050 4.050 9 C -0.562 4.562 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.533 5.533 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.089 4.089 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.121 4.121 23 N -0.313 5.313 24 C 0.045 3.955 25 N -0.299 5.299 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.155 0.845 30 H 0.247 0.753 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.952 -4.370 -13.367 16.155 hybrid contribution 0.619 1.694 -0.205 1.815 sum -7.333 -2.676 -13.571 15.656 Atomic orbital electron populations 1.20700 0.88751 1.03294 1.03208 1.21247 0.96838 0.87927 0.88807 1.21943 0.93894 1.00533 1.15570 1.18594 0.88484 0.86760 0.85602 1.44618 1.09090 1.01490 1.75194 1.20086 0.97819 0.82598 0.90038 0.89408 1.19862 0.94444 0.93350 0.97356 1.20971 1.30463 1.12538 0.92225 0.90646 1.24981 0.95875 0.97516 0.94639 1.69902 1.38086 1.38604 1.06712 0.86855 0.79250 0.83652 0.80001 1.20149 1.21236 1.18998 1.20644 0.94036 0.97696 0.96548 1.21030 0.96404 0.99072 0.96685 1.21059 0.99396 1.00504 0.92977 1.21060 0.94575 1.00268 0.98893 1.21100 0.97020 0.99454 0.96531 1.20969 0.99326 0.99360 0.92419 1.67949 1.41673 0.97860 1.23836 1.24479 0.86656 0.95628 0.88719 1.68186 1.10026 1.29894 1.21833 0.90097 0.90653 0.90459 0.84484 0.75298 0.95664 0.94953 0.92536 0.85927 0.86350 0.86620 0.86536 0.86343 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.21 36.00 0.37 -0.76 16 2 C 0.19 2.94 6.82 -82.33 -0.56 2.38 16 3 C -0.29 -4.77 8.92 -39.11 -0.35 -5.12 16 4 C 0.45 8.13 7.68 -154.78 -1.19 6.94 16 5 N -0.68 -12.27 4.18 -54.91 -0.23 -12.50 16 6 C 0.20 3.59 1.83 -69.08 -0.13 3.47 16 7 H 0.09 1.60 6.36 -51.93 -0.33 1.27 16 8 C -0.01 -0.27 3.56 -27.88 -0.10 -0.37 16 9 C -0.52 -13.83 9.39 -34.44 -0.32 -14.15 16 10 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 13 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 17 C -0.09 -1.39 4.85 -104.62 -0.51 -1.89 16 18 C -0.11 -1.58 9.67 -39.58 -0.38 -1.97 16 19 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 20 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 22 C -0.10 -1.56 9.32 -39.58 -0.37 -1.92 16 23 N -0.59 -10.50 10.47 -13.81 -0.14 -10.65 16 24 C 0.34 5.28 12.28 -92.19 -1.13 4.15 16 25 N -0.58 -9.26 10.37 -10.88 -0.11 -9.37 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.14 2.08 6.34 -52.49 -0.33 1.74 16 30 H 0.41 7.61 8.73 -40.82 -0.36 7.25 16 31 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 32 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.79 7.72 -52.48 -0.41 1.38 16 39 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -30.93 332.22 -10.50 -41.42 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.16 Total: 9.21 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -5.96 Total: -13.23 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.29 Total: -58.41 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.93 -10.50 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164316232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.823 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds