Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38621 * 120.39894 * 2 1 4 4 C 1.38590 * 118.55978 * 179.97438 * 3 2 1 5 5 N 1.32295 * 119.19311 * 359.97438 * 4 3 2 6 6 C 1.32475 * 120.74197 * 359.97438 * 5 4 3 7 7 N 1.38413 * 119.21702 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99929 * 0.02562 * 7 6 5 9 9 H 1.09007 * 109.46961 * 34.99740 * 8 7 6 10 10 C 1.52997 * 109.47120 * 154.99781 * 8 7 6 11 11 C 1.50707 * 109.46875 * 294.99898 * 10 8 7 12 12 H 1.07997 * 120.00303 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99480 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99666 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46682 * 60.00624 * 15 13 11 17 17 H 1.48500 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47311 * 300.00428 * 15 13 11 19 19 C 1.50695 * 109.47195 * 275.00151 * 8 7 6 20 20 C 1.38244 * 119.99611 * 319.72331 * 19 8 7 21 21 C 1.38231 * 119.99769 * 179.81436 * 20 19 8 22 22 C 1.38243 * 120.00095 * 0.39686 * 21 20 19 23 23 C 1.38227 * 119.99796 * 359.85614 * 22 21 20 24 24 C 1.38228 * 120.00498 * 140.00132 * 19 8 7 25 25 N 1.32262 * 120.40211 * 179.71529 * 2 1 3 26 26 H 1.09001 * 109.46953 * 90.00079 * 1 2 3 27 27 H 1.09000 * 109.47318 * 209.99677 * 1 2 3 28 28 H 1.09000 * 109.47161 * 330.00307 * 1 2 3 29 29 H 1.08005 * 120.72706 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.40260 * 180.02562 * 4 3 2 31 31 H 0.97004 * 119.99826 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47295 * 54.99982 * 10 8 7 33 33 H 1.09003 * 109.46992 * 175.00132 * 10 8 7 34 34 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.00093 * 0.02562 * 20 19 8 36 36 H 1.07999 * 120.00336 * 180.23358 * 21 20 19 37 37 H 1.08004 * 120.00037 * 179.83741 * 22 21 20 38 38 H 1.08005 * 120.00216 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00045 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1956 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0239 0.0016 6 6 3.5014 -1.1485 0.0026 7 7 4.1699 -2.3605 0.0042 8 6 5.6346 -2.3891 0.0053 9 1 6.0139 -1.5540 0.5943 10 6 6.1185 -3.7056 0.6165 11 6 5.7175 -3.7628 2.0681 12 1 5.1717 -2.9425 2.5103 13 6 6.0465 -4.8630 2.8313 14 7 6.7107 -5.8622 2.2926 15 14 5.5501 -4.9336 4.6307 16 1 4.0714 -4.8505 4.7399 17 1 6.0196 -6.2114 5.2240 18 1 6.1650 -3.7949 5.3590 19 6 6.1403 -2.2764 -1.4098 20 6 5.4970 -2.9526 -2.4296 21 6 5.9585 -2.8461 -3.7282 22 6 7.0684 -2.0701 -4.0059 23 6 7.7147 -1.3982 -2.9854 24 6 7.2509 -1.5016 -1.6873 25 7 2.1764 -1.1407 0.0057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6870 2.1414 -0.0004 30 1 4.1698 2.0646 0.0010 31 1 3.6685 -3.1909 0.0045 32 1 5.6679 -4.5418 0.0818 33 1 7.2039 -3.7659 0.5367 34 1 6.9424 -6.6360 2.8297 35 1 4.6317 -3.5612 -2.2122 36 1 5.4537 -3.3713 -4.5256 37 1 7.4305 -1.9890 -5.0202 38 1 8.5821 -0.7922 -3.2022 39 1 7.7560 -0.9765 -0.8900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164341961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = 70.021277 kcal Electronic energy + Delta-G solvation = -21505.156141 eV Core-core repulsion = 18412.408291 eV Total energy + Delta-G solvation = -3092.747850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56752 -38.96369 -36.14945 -33.89601 -33.12572 -32.03929 -30.51715 -29.93965 -28.65676 -28.02889 -24.90435 -23.34254 -22.28478 -22.10681 -21.81444 -19.78136 -17.67540 -16.84389 -16.56096 -16.11185 -15.27699 -15.02957 -14.73865 -14.61870 -14.54378 -13.90773 -13.55192 -13.27039 -12.98625 -12.89914 -12.70968 -12.52073 -12.23552 -12.08907 -11.48763 -11.12552 -10.94384 -10.75015 -10.70840 -10.60833 -10.38994 -10.25671 -9.94895 -9.60862 -9.21743 -8.69376 -8.51116 -8.43670 -8.17593 -7.54402 -6.06861 -4.10007 1.52097 1.60184 1.79741 1.82346 3.30832 3.35147 3.38577 3.45431 4.24246 4.28627 4.42168 4.49465 4.76894 5.10649 5.27682 5.29644 5.30465 5.38445 5.45097 5.49224 5.54348 5.57084 5.61027 5.93236 5.94586 5.96222 6.06057 6.20166 6.37461 6.43336 6.59679 6.64227 6.86564 6.87243 7.09314 7.26174 7.42050 7.47646 7.54882 7.75036 7.90020 8.08191 8.27679 8.84891 8.95131 9.54774 11.03669 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.007011 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.720020 B = 3992.997632 C = 6141.354092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.215 3.785 3 C -0.314 4.314 4 C 0.192 3.808 5 N -0.567 5.567 6 C 0.577 3.423 7 N -0.663 5.663 8 C 0.198 3.802 9 H 0.091 0.909 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.105 4.105 25 N -0.578 5.578 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.134 0.866 30 H 0.159 0.841 31 H 0.414 0.586 32 H 0.024 0.976 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 12.050 -9.118 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.065 3.935 3 C -0.341 4.341 4 C 0.024 3.976 5 N -0.290 5.290 6 C 0.220 3.780 7 N -0.295 5.295 8 C 0.093 3.907 9 H 0.109 0.891 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.071 4.071 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.124 4.124 25 N -0.303 5.303 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.447 10.909 -9.050 15.185 hybrid contribution -0.811 0.365 0.982 1.325 sum -6.258 11.274 -8.068 15.211 Atomic orbital electron populations 1.20733 0.88717 1.03549 1.03106 1.21290 0.96631 0.87761 0.87783 1.22164 0.96411 0.99588 1.15916 1.22827 0.91850 0.95160 0.87799 1.67982 1.40600 0.97902 1.22539 1.19435 0.84637 0.87218 0.86734 1.44442 1.06566 1.03207 1.75274 1.20286 0.77111 1.03001 0.90281 0.89121 1.19410 0.97466 0.89051 0.95519 1.21076 1.36331 1.03536 0.94792 0.92560 1.24974 0.95037 0.95638 0.98430 1.69947 1.39211 1.07498 1.36443 0.86656 0.78967 0.77229 0.85165 1.20269 1.21257 1.20255 1.20586 0.95018 0.94934 0.96601 1.20935 0.99930 0.99177 0.92477 1.21037 0.97209 0.99637 0.96505 1.20985 0.96805 0.98891 0.98671 1.21030 0.99882 1.00200 0.93124 1.20988 0.96481 0.98496 0.96426 1.67738 1.07970 1.30822 1.23758 0.90179 0.90267 0.90517 0.84847 0.82391 0.74812 0.95739 0.94521 0.92817 0.86669 0.86854 0.86926 0.86668 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.22 36.01 0.37 -0.69 16 2 C 0.21 3.12 6.82 -82.26 -0.56 2.56 16 3 C -0.31 -4.06 9.85 -39.31 -0.39 -4.45 16 4 C 0.19 2.75 11.30 -17.22 -0.19 2.56 16 5 N -0.57 -10.25 9.20 -13.93 -0.13 -10.38 16 6 C 0.58 11.06 8.40 -322.80 -2.71 8.35 16 7 N -0.66 -13.15 4.18 -56.93 -0.24 -13.39 16 8 C 0.20 4.08 2.11 -69.09 -0.15 3.94 16 9 H 0.09 1.98 7.37 -51.92 -0.38 1.60 16 10 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 11 C -0.52 -14.11 8.84 -34.44 -0.30 -14.41 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C -0.07 -1.30 4.93 -104.63 -0.52 -1.82 16 20 C -0.11 -1.88 9.32 -39.58 -0.37 -2.25 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 22 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 24 C -0.11 -1.80 9.67 -39.59 -0.38 -2.18 16 25 N -0.58 -10.38 10.40 -10.15 -0.11 -10.48 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.41 8.23 8.72 -40.82 -0.36 7.87 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 2.00 7.73 -52.49 -0.41 1.60 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.12 1.94 8.04 -52.48 -0.42 1.52 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -31.19 338.31 -11.61 -42.80 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.33 Total: 8.32 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -6.62 Total: -13.28 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.26 Total: -59.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.19 -11.61 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164341961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.821 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds