Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38621 * 120.39894 * 2 1 4 4 C 1.38590 * 118.55978 * 179.97438 * 3 2 1 5 5 N 1.32295 * 119.19311 * 359.97438 * 4 3 2 6 6 C 1.32475 * 120.74197 * 359.97438 * 5 4 3 7 7 N 1.38413 * 119.21702 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99929 * 0.02562 * 7 6 5 9 9 H 1.09007 * 109.46961 * 34.99740 * 8 7 6 10 10 C 1.52997 * 109.47120 * 154.99781 * 8 7 6 11 11 C 1.50707 * 109.46875 * 294.99898 * 10 8 7 12 12 H 1.07997 * 120.00303 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99480 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99666 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46682 * 60.00624 * 15 13 11 17 17 H 1.48500 * 109.47171 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47311 * 300.00428 * 15 13 11 19 19 C 1.50695 * 109.47195 * 275.00151 * 8 7 6 20 20 C 1.38244 * 119.99611 * 319.72331 * 19 8 7 21 21 C 1.38231 * 119.99769 * 179.81436 * 20 19 8 22 22 C 1.38243 * 120.00095 * 0.39686 * 21 20 19 23 23 C 1.38227 * 119.99796 * 359.85614 * 22 21 20 24 24 C 1.38228 * 120.00498 * 140.00132 * 19 8 7 25 25 N 1.32262 * 120.40211 * 179.71529 * 2 1 3 26 26 H 1.09001 * 109.46953 * 90.00079 * 1 2 3 27 27 H 1.09000 * 109.47318 * 209.99677 * 1 2 3 28 28 H 1.09000 * 109.47161 * 330.00307 * 1 2 3 29 29 H 1.08005 * 120.72706 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.40260 * 180.02562 * 4 3 2 31 31 H 0.97004 * 119.99826 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47295 * 54.99982 * 10 8 7 33 33 H 1.09003 * 109.46992 * 175.00132 * 10 8 7 34 34 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.00093 * 0.02562 * 20 19 8 36 36 H 1.07999 * 120.00336 * 180.23358 * 21 20 19 37 37 H 1.08004 * 120.00037 * 179.83741 * 22 21 20 38 38 H 1.08005 * 120.00216 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00045 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1956 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0239 0.0016 6 6 3.5014 -1.1485 0.0026 7 7 4.1699 -2.3605 0.0042 8 6 5.6346 -2.3891 0.0053 9 1 6.0139 -1.5540 0.5943 10 6 6.1185 -3.7056 0.6165 11 6 5.7175 -3.7628 2.0681 12 1 5.1717 -2.9425 2.5103 13 6 6.0465 -4.8630 2.8313 14 7 6.7107 -5.8622 2.2926 15 14 5.5501 -4.9336 4.6307 16 1 4.0714 -4.8505 4.7399 17 1 6.0196 -6.2114 5.2240 18 1 6.1650 -3.7949 5.3590 19 6 6.1403 -2.2764 -1.4098 20 6 5.4970 -2.9526 -2.4296 21 6 5.9585 -2.8461 -3.7282 22 6 7.0684 -2.0701 -4.0059 23 6 7.7147 -1.3982 -2.9854 24 6 7.2509 -1.5016 -1.6873 25 7 2.1764 -1.1407 0.0057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6870 2.1414 -0.0004 30 1 4.1698 2.0646 0.0010 31 1 3.6685 -3.1909 0.0045 32 1 5.6679 -4.5418 0.0818 33 1 7.2039 -3.7659 0.5367 34 1 6.9424 -6.6360 2.8297 35 1 4.6317 -3.5612 -2.2122 36 1 5.4537 -3.3713 -4.5256 37 1 7.4305 -1.9890 -5.0202 38 1 8.5821 -0.7922 -3.2022 39 1 7.7560 -0.9765 -0.8900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164341961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = 54.373337 kcal Electronic energy + Delta-G solvation = -21505.834687 eV Core-core repulsion = 18412.408291 eV Total energy + Delta-G solvation = -3093.426396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80370 -40.27052 -37.58888 -35.24064 -34.84741 -33.55978 -31.76142 -31.18242 -30.39421 -29.10312 -26.69948 -24.53071 -23.83999 -23.49890 -23.06470 -21.22555 -19.04621 -18.55894 -18.02364 -17.54959 -16.63624 -16.33842 -16.31066 -16.02461 -15.84459 -15.14078 -14.94947 -14.59268 -14.26476 -14.18562 -13.95615 -13.81060 -13.63592 -13.40065 -13.05359 -12.95741 -12.65042 -12.49797 -12.20846 -11.91141 -11.76113 -11.63215 -11.52382 -11.37811 -10.90215 -10.62143 -9.93103 -9.75438 -9.52344 -8.89019 -8.23133 -6.33107 0.37454 0.41281 0.52734 0.56718 1.35681 1.37087 1.45456 2.08244 2.36661 2.97785 3.06045 3.10520 3.38637 3.75496 3.90891 4.02374 4.06478 4.21367 4.32467 4.43265 4.46641 4.54910 4.66422 4.72755 4.76405 4.80014 4.80712 4.98455 5.13353 5.14884 5.20345 5.33540 5.40975 5.59508 5.61819 5.64583 5.73621 5.82510 6.09836 6.15695 6.20133 6.30147 6.70376 6.78586 7.35045 7.54139 8.87494 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.007011 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.720020 B = 3992.997632 C = 6141.354092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.194 3.806 3 C -0.295 4.295 4 C 0.177 3.823 5 N -0.594 5.594 6 C 0.556 3.444 7 N -0.675 5.675 8 C 0.221 3.779 9 H 0.072 0.928 10 C 0.036 3.964 11 C -0.528 4.528 12 H 0.048 0.952 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.271 1.271 19 C -0.092 4.092 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.122 4.122 25 N -0.605 5.605 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.178 0.822 30 H 0.194 0.806 31 H 0.407 0.593 32 H 0.003 0.997 33 H 0.010 0.990 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 14.405 -10.054 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.047 3.953 3 C -0.320 4.320 4 C 0.011 3.989 5 N -0.318 5.318 6 C 0.199 3.801 7 N -0.307 5.307 8 C 0.115 3.885 9 H 0.090 0.910 10 C -0.002 4.002 11 C -0.566 4.566 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.565 5.565 15 Si 0.781 3.219 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.196 1.196 19 C -0.093 4.093 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.141 4.141 25 N -0.330 5.330 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.195 0.805 30 H 0.211 0.789 31 H 0.243 0.757 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.355 13.328 -9.989 17.827 hybrid contribution -0.603 -0.242 1.200 1.365 sum -6.957 13.086 -8.788 17.230 Atomic orbital electron populations 1.20851 0.85646 1.04639 1.04439 1.22148 0.98683 0.87474 0.87010 1.22639 0.95907 1.00793 1.12681 1.23560 0.93243 0.95072 0.87066 1.67977 1.41588 0.98736 1.23514 1.19508 0.85334 0.87134 0.88090 1.44225 1.05929 1.03620 1.76971 1.19706 0.77923 0.99419 0.91416 0.91029 1.19151 0.95549 0.90849 0.94602 1.21324 1.35904 1.03265 0.96119 0.93347 1.25782 0.95034 0.95291 1.02743 1.70061 1.40319 1.08079 1.38055 0.85643 0.78640 0.77549 0.80044 1.19893 1.20415 1.19618 1.20456 0.96380 0.96932 0.95580 1.20993 1.00127 0.99688 0.93631 1.21368 0.97646 0.99677 0.95944 1.21441 0.95688 0.97217 1.00324 1.21406 1.00492 0.99929 0.92021 1.21152 0.96240 0.98778 0.97917 1.67756 1.07553 1.32943 1.24733 0.88545 0.91197 0.87379 0.80476 0.78892 0.75669 0.97884 0.97172 0.92658 0.87753 0.84357 0.83170 0.83441 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 10.22 71.24 0.73 -1.03 16 2 C 0.19 5.34 6.82 42.59 0.29 5.63 16 3 C -0.29 -6.76 9.85 22.45 0.22 -6.54 16 4 C 0.18 4.77 11.30 84.71 0.96 5.73 16 5 N -0.59 -21.74 9.20 -197.99 -1.82 -23.56 16 6 C 0.56 22.11 8.40 261.49 2.20 24.30 16 7 N -0.67 -28.61 4.18 -334.02 -1.40 -30.01 16 8 C 0.22 9.76 2.11 44.24 0.09 9.85 16 9 H 0.07 3.36 7.37 -2.38 -0.02 3.34 16 10 C 0.04 1.90 4.49 29.85 0.13 2.03 16 11 C -0.53 -30.11 8.84 25.60 0.23 -29.88 16 12 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 13 C 0.01 0.58 5.46 84.65 0.46 1.05 16 14 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 15 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 C -0.09 -3.60 4.93 -19.87 -0.10 -3.70 16 20 C -0.13 -4.59 9.32 22.27 0.21 -4.39 16 21 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 22 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 23 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.12 -4.23 9.67 22.27 0.22 -4.01 16 25 N -0.60 -22.01 10.40 -186.03 -1.93 -23.94 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 31 H 0.41 17.64 8.72 -92.71 -0.81 16.83 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.10 3.90 7.73 -2.91 -0.02 3.88 16 36 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.12 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -71.19 338.31 3.70 -67.49 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.24 Total: 29.08 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.30 Total: -10.84 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -4.87 Total: -133.02 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.19 3.70 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164341961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.859 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds