Wall clock time and date at job start Tue Mar 31 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47244 * 2 1 4 4 C 1.50707 * 109.46762 * 240.00465 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99892 * 4 2 1 6 6 C 1.37877 * 119.99754 * 59.99911 * 4 2 1 7 7 N 1.31510 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47045 * 120.00117 * 8 6 4 11 11 H 1.48506 * 109.47140 * 240.00136 * 8 6 4 12 12 N 1.46505 * 109.47360 * 120.00944 * 2 1 3 13 13 C 1.38539 * 119.99319 * 274.99764 * 12 2 1 14 14 C 1.39661 * 120.53720 * 0.02562 * 13 12 2 15 15 C 1.38074 * 118.33518 * 179.97438 * 14 13 12 16 16 N 1.32585 * 119.19768 * 359.73469 * 15 14 13 17 17 C 1.31754 * 121.01085 * 0.53717 * 16 15 14 18 18 C 1.50706 * 119.08278 * 179.72024 * 17 16 15 19 19 C 1.50703 * 109.46982 * 269.73884 * 18 17 16 20 20 C 1.38234 * 120.00257 * 90.00130 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38229 * 120.00124 * 359.45911 * 21 20 19 23 23 C 1.38234 * 119.99957 * 0.56005 * 22 21 20 24 24 C 1.38234 * 119.99503 * 270.01730 * 19 18 17 25 25 N 1.31776 * 121.83402 * 359.45138 * 17 16 15 26 26 H 1.09005 * 109.47214 * 299.99214 * 1 2 3 27 27 H 1.08998 * 109.47169 * 59.99462 * 1 2 3 28 28 H 1.09004 * 109.47178 * 179.97438 * 1 2 3 29 29 H 0.97006 * 119.99923 * 179.97438 * 7 6 4 30 30 H 0.96995 * 120.00319 * 94.99306 * 12 2 1 31 31 H 1.08006 * 120.83005 * 359.95195 * 14 13 12 32 32 H 1.07996 * 120.40136 * 179.97438 * 15 14 13 33 33 H 1.08988 * 109.47229 * 149.73339 * 18 17 16 34 34 H 1.09000 * 109.46558 * 29.73320 * 18 17 16 35 35 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 37 37 H 1.07999 * 119.99961 * 180.28392 * 22 21 20 38 38 H 1.08001 * 120.00274 * 179.72697 * 23 22 21 39 39 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 3.1482 -2.2854 -3.6041 10 1 1.1675 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 7 2.0184 -0.6908 1.1961 13 6 2.1507 0.0003 2.3895 14 6 1.8213 1.3554 2.4651 15 6 1.9701 1.9993 3.6773 16 7 2.4122 1.3149 4.7233 17 6 2.7195 0.0380 4.6183 18 6 3.2241 -0.6963 5.8338 19 6 4.7267 -0.5973 5.8926 20 6 5.3245 0.4526 6.5644 21 6 6.7028 0.5464 6.6133 22 6 7.4833 -0.4156 6.0001 23 6 6.8855 -1.4652 5.3279 24 6 5.5072 -1.5562 5.2744 25 7 2.5929 -0.6162 3.4815 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7093 1.1621 -3.4843 30 1 2.2490 -1.6319 1.1524 31 1 1.4596 1.8863 1.5969 32 1 1.7256 3.0469 3.7734 33 1 2.9311 -1.7443 5.7728 34 1 2.7952 -0.2508 6.7314 35 1 4.7146 1.2021 7.0468 36 1 7.1698 1.3691 7.1345 37 1 8.5602 -0.3447 6.0422 38 1 7.4953 -2.2145 4.8450 39 1 5.0402 -2.3761 4.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166274159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:06 Heat of formation + Delta-G solvation = 64.809064 kcal Electronic energy + Delta-G solvation = -20967.833257 eV Core-core repulsion = 17874.859388 eV Total energy + Delta-G solvation = -3092.973869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45129 -39.06363 -36.42930 -33.70100 -33.36620 -31.91078 -30.83332 -30.28847 -28.39346 -27.08612 -25.41599 -23.27368 -22.77365 -22.42802 -21.23993 -20.06162 -17.91062 -16.87904 -16.55501 -16.06997 -15.28385 -15.06444 -14.89625 -14.72294 -14.39391 -13.96470 -13.66526 -13.35690 -13.13203 -12.94671 -12.56064 -12.30945 -12.13479 -11.98295 -11.45158 -11.16912 -11.09974 -10.93718 -10.90357 -10.58613 -10.34727 -10.32830 -10.08268 -9.24774 -9.20458 -8.86387 -8.68576 -8.65354 -8.62580 -7.27033 -6.28103 -4.36539 1.30879 1.46053 1.64961 2.01728 3.16471 3.24926 3.28301 3.73884 3.90357 4.26796 4.38385 4.56146 4.84112 4.93781 4.98717 5.04494 5.05780 5.19604 5.38316 5.52760 5.55105 5.71381 5.76792 5.84535 5.98469 6.10507 6.15695 6.24803 6.49627 6.54152 6.54363 6.70176 6.74079 6.82463 6.91043 7.05217 7.24772 7.42937 7.54166 7.68734 7.92084 8.15349 8.46807 8.67704 8.90181 9.31446 10.78256 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.003793 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.722494 B = 7379.508390 C = 8205.582379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.267 3.733 3 H 0.045 0.955 4 C -0.533 4.533 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.682 5.682 13 C 0.445 3.555 14 C -0.295 4.295 15 C 0.165 3.835 16 N -0.577 5.577 17 C 0.358 3.642 18 C -0.009 4.009 19 C -0.074 4.074 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.103 4.103 25 N -0.589 5.589 26 H 0.014 0.986 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.398 0.602 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -0.778 14.989 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.062 0.938 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.308 5.308 13 C 0.198 3.802 14 C -0.324 4.324 15 C 0.005 3.995 16 N -0.299 5.299 17 C 0.087 3.913 18 C -0.048 4.048 19 C -0.075 4.075 20 C -0.122 4.122 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.121 4.121 25 N -0.315 5.315 26 H 0.033 0.967 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.232 0.768 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.412 -1.001 15.345 16.661 hybrid contribution 0.042 -0.223 -1.895 1.909 sum 6.454 -1.225 13.450 14.968 Atomic orbital electron populations 1.22199 0.98179 0.99940 1.00876 1.18921 0.91064 0.93569 0.79936 0.93761 1.21193 1.32533 1.13492 0.89929 0.91782 1.24862 0.94620 0.94936 0.99124 1.69871 1.35863 1.22443 1.24095 0.86340 0.78687 0.79603 0.82229 1.19635 1.20734 1.20752 1.45534 1.65842 1.12926 1.06461 1.18752 0.86124 0.88783 0.86588 1.22262 1.13044 0.95646 1.01405 1.22673 0.90027 0.99280 0.87504 1.68097 1.19903 1.08798 1.33053 1.22277 0.90057 0.87399 0.91543 1.19259 0.91301 1.00509 0.93705 1.19624 0.94398 0.95434 0.98091 1.21109 0.94713 0.97377 0.99025 1.21109 0.93887 0.99007 1.00392 1.21127 0.99617 0.95083 0.98464 1.21134 0.94850 0.98604 0.99637 1.21146 0.93621 0.99080 0.98216 1.67720 1.23908 1.40557 0.99314 0.96728 0.88735 0.94906 0.92447 0.76756 0.83883 0.82637 0.88763 0.88659 0.85700 0.86284 0.86443 0.86228 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.23 37.16 0.34 -3.15 16 2 C 0.27 6.29 2.26 -69.08 -0.16 6.13 16 3 H 0.04 1.12 6.51 -51.93 -0.34 0.79 16 4 C -0.53 -13.66 8.73 -34.44 -0.30 -13.96 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.48 11.32 55.43 0.63 -22.86 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.68 -14.41 5.22 -54.90 -0.29 -14.70 16 13 C 0.44 8.98 7.69 -154.79 -1.19 7.79 16 14 C -0.29 -5.54 8.93 -39.11 -0.35 -5.89 16 15 C 0.16 2.74 11.29 -17.29 -0.20 2.55 16 16 N -0.58 -9.90 10.33 -10.81 -0.11 -10.02 16 17 C 0.36 6.13 6.88 -157.24 -1.08 5.05 16 18 C -0.01 -0.12 5.78 -29.03 -0.17 -0.28 16 19 C -0.07 -0.99 5.12 -104.62 -0.54 -1.53 16 20 C -0.10 -1.29 9.70 -39.58 -0.38 -1.68 16 21 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 22 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 23 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 25 N -0.59 -11.20 10.37 -9.96 -0.10 -11.30 16 26 H 0.01 0.29 7.76 -51.93 -0.40 -0.11 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.40 8.12 8.66 -40.82 -0.35 7.77 16 31 H 0.14 2.72 6.31 -52.48 -0.33 2.39 16 32 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.09 1.16 8.08 -51.94 -0.42 0.74 16 34 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -27.97 332.86 -10.65 -38.62 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.08 Total: 10.64 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -5.69 Total: -10.52 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.13 Total: -58.87 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.97 -10.65 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166274159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.428 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds