Wall clock time and date at job start Tue Mar 31 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47244 * 2 1 4 4 C 1.50707 * 109.46762 * 240.00465 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99892 * 4 2 1 6 6 C 1.37877 * 119.99754 * 59.99911 * 4 2 1 7 7 N 1.31510 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47045 * 120.00117 * 8 6 4 11 11 H 1.48506 * 109.47140 * 240.00136 * 8 6 4 12 12 N 1.46505 * 109.47360 * 120.00944 * 2 1 3 13 13 C 1.38539 * 119.99319 * 274.99764 * 12 2 1 14 14 C 1.39661 * 120.53720 * 0.02562 * 13 12 2 15 15 C 1.38074 * 118.33518 * 179.97438 * 14 13 12 16 16 N 1.32585 * 119.19768 * 359.73469 * 15 14 13 17 17 C 1.31754 * 121.01085 * 0.53717 * 16 15 14 18 18 C 1.50706 * 119.08278 * 179.72024 * 17 16 15 19 19 C 1.50703 * 109.46982 * 269.73884 * 18 17 16 20 20 C 1.38234 * 120.00257 * 90.00130 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38229 * 120.00124 * 359.45911 * 21 20 19 23 23 C 1.38234 * 119.99957 * 0.56005 * 22 21 20 24 24 C 1.38234 * 119.99503 * 270.01730 * 19 18 17 25 25 N 1.31776 * 121.83402 * 359.45138 * 17 16 15 26 26 H 1.09005 * 109.47214 * 299.99214 * 1 2 3 27 27 H 1.08998 * 109.47169 * 59.99462 * 1 2 3 28 28 H 1.09004 * 109.47178 * 179.97438 * 1 2 3 29 29 H 0.97006 * 119.99923 * 179.97438 * 7 6 4 30 30 H 0.96995 * 120.00319 * 94.99306 * 12 2 1 31 31 H 1.08006 * 120.83005 * 359.95195 * 14 13 12 32 32 H 1.07996 * 120.40136 * 179.97438 * 15 14 13 33 33 H 1.08988 * 109.47229 * 149.73339 * 18 17 16 34 34 H 1.09000 * 109.46558 * 29.73320 * 18 17 16 35 35 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 37 37 H 1.07999 * 119.99961 * 180.28392 * 22 21 20 38 38 H 1.08001 * 120.00274 * 179.72697 * 23 22 21 39 39 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 3.1482 -2.2854 -3.6041 10 1 1.1675 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 7 2.0184 -0.6908 1.1961 13 6 2.1507 0.0003 2.3895 14 6 1.8213 1.3554 2.4651 15 6 1.9701 1.9993 3.6773 16 7 2.4122 1.3149 4.7233 17 6 2.7195 0.0380 4.6183 18 6 3.2241 -0.6963 5.8338 19 6 4.7267 -0.5973 5.8926 20 6 5.3245 0.4526 6.5644 21 6 6.7028 0.5464 6.6133 22 6 7.4833 -0.4156 6.0001 23 6 6.8855 -1.4652 5.3279 24 6 5.5072 -1.5562 5.2744 25 7 2.5929 -0.6162 3.4815 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7093 1.1621 -3.4843 30 1 2.2490 -1.6319 1.1524 31 1 1.4596 1.8863 1.5969 32 1 1.7256 3.0469 3.7734 33 1 2.9311 -1.7443 5.7728 34 1 2.7952 -0.2508 6.7314 35 1 4.7146 1.2021 7.0468 36 1 7.1698 1.3691 7.1345 37 1 8.5602 -0.3447 6.0422 38 1 7.4953 -2.2145 4.8450 39 1 5.0402 -2.3761 4.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166274159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:06 Heat of formation + Delta-G solvation = 51.282688 kcal Electronic energy + Delta-G solvation = -20968.419805 eV Core-core repulsion = 17874.859388 eV Total energy + Delta-G solvation = -3093.560417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84465 -40.01642 -38.08220 -35.22448 -34.74506 -33.46186 -31.73312 -31.67197 -30.09631 -28.20947 -27.35895 -24.66914 -24.20294 -23.37464 -22.49977 -21.53167 -19.55192 -18.16141 -17.92549 -17.55361 -16.83079 -16.31549 -16.21419 -15.89521 -15.67383 -15.42339 -15.25696 -14.46689 -14.33454 -14.22947 -14.08257 -13.80376 -13.26368 -13.20411 -13.03509 -12.93523 -12.74820 -12.38503 -12.18672 -12.09468 -11.90651 -11.81545 -11.56785 -11.11241 -10.72894 -10.54203 -10.08826 -9.77697 -9.62412 -8.87153 -8.24091 -6.39144 0.14367 0.48039 0.54355 0.56999 1.40384 1.43211 1.53645 2.22507 2.45886 2.83047 3.01460 3.07792 3.34630 3.56864 3.94851 3.96887 4.04142 4.20537 4.33832 4.41425 4.48110 4.56281 4.65101 4.68059 4.77804 4.85138 4.90310 4.92458 5.00518 5.14437 5.21731 5.29709 5.50651 5.60171 5.62295 5.65055 5.74588 5.79086 5.88548 6.05978 6.15872 6.50445 6.67008 6.91335 7.30725 7.44964 8.81725 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.003793 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.722494 B = 7379.508390 C = 8205.582379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.278 3.722 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.060 0.940 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.280 1.280 12 N -0.689 5.689 13 C 0.427 3.573 14 C -0.313 4.313 15 C 0.176 3.824 16 N -0.576 5.576 17 C 0.352 3.648 18 C -0.005 4.005 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.121 4.121 25 N -0.599 5.599 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.268 0.732 30 H 0.398 0.602 31 H 0.136 0.864 32 H 0.195 0.805 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -0.499 16.100 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.175 3.825 3 H 0.040 0.960 4 C -0.590 4.590 5 H 0.079 0.921 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.316 5.316 13 C 0.182 3.818 14 C -0.342 4.342 15 C 0.015 3.985 16 N -0.296 5.296 17 C 0.083 3.917 18 C -0.044 4.044 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.139 4.139 25 N -0.325 5.325 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.154 0.846 32 H 0.211 0.789 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.482 -0.729 16.496 18.128 hybrid contribution -0.228 -0.262 -2.112 2.140 sum 7.253 -0.991 14.384 16.140 Atomic orbital electron populations 1.22008 0.97829 0.99551 1.00415 1.18585 0.91187 0.92339 0.80405 0.96003 1.21477 1.32751 1.13636 0.91095 0.92132 1.25595 0.94752 0.95568 1.01681 1.69970 1.36522 1.23394 1.24773 0.85398 0.78189 0.78524 0.78861 1.19386 1.20230 1.20525 1.45244 1.67087 1.12844 1.06410 1.18961 0.86813 0.89432 0.86624 1.22326 1.14300 0.95310 1.02249 1.23272 0.88114 1.00764 0.86337 1.68246 1.19642 1.08786 1.32959 1.23041 0.88994 0.87729 0.91952 1.19363 0.91690 1.00638 0.92680 1.19675 0.94147 0.96199 0.99106 1.21314 0.95551 0.97286 0.99055 1.21461 0.93583 0.99651 1.00064 1.21490 1.01068 0.94441 0.97518 1.21414 0.94583 0.99414 0.99797 1.21273 0.94488 0.99345 0.98833 1.67772 1.24140 1.41011 0.99568 0.95502 0.90708 0.95116 0.92266 0.76710 0.84638 0.78864 0.88103 0.86816 0.84822 0.83848 0.83924 0.84684 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 9.23 71.98 0.66 -5.79 16 2 C 0.28 13.38 2.26 44.25 0.10 13.48 16 3 H 0.02 1.16 6.51 -2.39 -0.02 1.14 16 4 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 5 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 6 C 0.03 1.30 5.30 84.66 0.45 1.75 16 7 N -0.91 -48.68 11.32 21.45 0.24 -48.44 16 8 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.69 -29.70 5.22 -327.61 -1.71 -31.41 16 13 C 0.43 17.37 7.69 133.18 1.02 18.40 16 14 C -0.31 -11.73 8.93 22.57 0.20 -11.53 16 15 C 0.18 5.55 11.29 84.54 0.95 6.50 16 16 N -0.58 -18.73 10.33 -188.12 -1.94 -20.68 16 17 C 0.35 11.71 6.88 138.77 0.95 12.67 16 18 C 0.00 -0.13 5.78 29.10 0.17 0.04 16 19 C -0.09 -2.30 5.12 -19.87 -0.10 -2.40 16 20 C -0.11 -2.62 9.70 22.27 0.22 -2.40 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 23 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 24 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 25 N -0.60 -22.67 10.37 -185.43 -1.92 -24.59 16 26 H 0.03 1.13 7.76 -2.38 -0.02 1.11 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 30 H 0.40 16.66 8.66 -92.71 -0.80 15.86 16 31 H 0.14 5.24 6.31 -2.91 -0.02 5.22 16 32 H 0.19 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.10 2.40 8.08 -2.39 -0.02 2.38 16 34 H 0.11 2.44 8.09 -2.39 -0.02 2.42 16 35 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -59.18 332.86 2.69 -56.48 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.26 Total: 33.39 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.74 Total: -8.07 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.33 Total: -125.12 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -59.18 2.69 -56.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166274159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.765 kcal (2) G-P(sol) polarization free energy of solvation -59.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds