Wall clock time and date at job start Tue Mar 31 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.72230 * 2 1 4 4 C 1.53677 * 110.65700 * 236.92787 * 2 1 3 5 5 N 1.44598 * 111.15247 * 241.60427 * 4 2 1 6 6 C 1.28263 * 119.97680 * 359.89468 * 5 4 2 7 7 N 1.37574 * 125.05549 * 180.02562 * 6 5 4 8 8 C 1.47083 * 120.87757 * 179.78874 * 7 6 5 9 9 C 1.53697 * 108.27387 * 128.75747 * 8 7 6 10 10 N 1.46899 * 109.25544 * 54.08146 * 9 8 7 11 11 C 1.46898 * 110.99706 * 172.60900 * 10 9 8 12 12 C 1.53000 * 109.47192 * 314.30163 * 11 10 9 13 13 C 1.50708 * 109.47006 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99905 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99978 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00102 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47127 * 59.99756 * 17 15 13 19 19 H 1.48499 * 109.47382 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46816 * 299.99789 * 17 15 13 21 21 C 1.46902 * 111.26934 * 296.75448 * 10 9 8 22 22 C 1.47071 * 120.88291 * 0.07179 * 7 6 5 23 23 S 1.76759 * 109.92912 * 0.10247 * 6 5 4 24 24 H 1.09005 * 109.46796 * 183.07195 * 1 2 3 25 25 H 1.08998 * 109.46635 * 303.07579 * 1 2 3 26 26 H 1.08999 * 109.46957 * 63.07315 * 1 2 3 27 27 H 1.09002 * 109.13661 * 2.02445 * 4 2 1 28 28 H 1.09001 * 109.13345 * 121.19004 * 4 2 1 29 29 H 1.08996 * 109.62642 * 248.52144 * 8 7 6 30 30 H 1.08994 * 109.62902 * 9.10841 * 8 7 6 31 31 H 1.09000 * 109.64897 * 294.07980 * 9 8 7 32 32 H 1.09000 * 109.42441 * 173.95077 * 9 8 7 33 33 H 1.09003 * 109.47573 * 74.30551 * 11 10 9 34 34 H 1.09006 * 109.47387 * 194.29946 * 11 10 9 35 35 H 1.08994 * 109.46898 * 300.00059 * 12 11 10 36 36 H 1.09000 * 109.47251 * 60.00531 * 12 11 10 37 37 H 0.97000 * 120.00087 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.49099 * 303.14522 * 21 10 9 39 39 H 1.08998 * 109.51142 * 183.07819 * 21 10 9 40 40 H 1.09003 * 109.63355 * 350.89063 * 22 7 6 41 41 H 1.09003 * 109.63401 * 111.28286 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0722 -0.7847 -1.2050 5 7 2.8563 -1.9218 -0.7772 6 6 3.0184 -2.1543 0.4737 7 7 3.7417 -3.2019 0.9955 8 6 3.8716 -3.3791 2.4498 9 6 3.4877 -4.8268 2.7950 10 7 4.2935 -5.7484 1.9830 11 6 4.0855 -7.1403 2.4041 12 6 4.1446 -7.2256 3.9306 13 6 3.9318 -8.6537 4.3625 14 1 3.7702 -9.4233 3.6223 15 6 3.9424 -8.9774 5.7027 16 7 4.1388 -8.0400 6.6041 17 14 3.6794 -10.7476 6.2381 18 1 4.7419 -11.6047 5.6536 19 1 3.7366 -10.8304 7.7197 20 1 2.3511 -11.2152 5.7667 21 6 4.0103 -5.5837 0.5510 22 6 4.4105 -4.1706 0.1139 23 16 2.1729 -0.9305 1.4286 24 1 -0.3633 -1.0263 0.0551 25 1 -0.3632 0.5608 0.8611 26 1 -0.3633 0.4654 -0.9162 27 1 1.2353 -1.1348 -1.8093 28 1 2.6972 -0.1262 -1.8082 29 1 4.9015 -3.1884 2.7513 30 1 3.2026 -2.6891 2.9640 31 1 2.4302 -4.9859 2.5841 32 1 3.6797 -5.0105 3.8521 33 1 3.1100 -7.4826 2.0585 34 1 4.8646 -7.7702 1.9746 35 1 5.1200 -6.8834 4.2761 36 1 3.3655 -6.5959 4.3601 37 1 4.1466 -8.2678 7.5469 38 1 2.9456 -5.7322 0.3714 39 1 4.5812 -6.3163 -0.0196 40 1 4.0981 -4.0041 -0.9171 41 1 5.4912 -4.0521 0.1927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175804972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:36 Heat of formation + Delta-G solvation = 34.259935 kcal Electronic energy + Delta-G solvation = -20157.704821 eV Core-core repulsion = 17198.850193 eV Total energy + Delta-G solvation = -2958.854627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.28924 -37.71982 -35.52159 -33.18119 -32.31604 -31.16993 -29.75303 -27.44533 -25.83484 -24.14299 -23.55408 -23.00960 -21.26215 -19.97567 -19.26667 -17.89294 -16.60612 -16.05530 -15.74741 -15.04994 -14.78541 -14.71167 -14.58945 -14.16327 -14.08584 -13.78702 -13.59721 -12.98195 -12.75626 -12.55499 -12.24521 -11.91504 -11.84277 -11.53328 -11.36524 -11.18589 -10.99503 -10.95239 -10.84455 -10.55531 -10.52977 -9.97474 -9.38978 -9.19276 -9.14876 -8.37442 -8.33141 -7.92287 -7.70087 -6.03579 -4.06020 1.11875 1.86004 2.17050 2.89121 3.31780 3.36339 3.38622 4.17170 4.31856 4.41478 4.48832 4.68952 4.84092 5.12334 5.19116 5.21715 5.32374 5.34514 5.36977 5.41117 5.46582 5.49841 5.56688 5.61716 5.76286 5.91066 5.99416 6.13145 6.22281 6.37763 6.38691 6.70751 6.86325 7.20913 7.43016 7.50538 7.69690 7.79889 7.84312 7.99354 8.38440 8.99957 9.57960 11.07721 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032730 B = 0.003251 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.272666 B = 8611.500453 C = 9024.205948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.112 0.888 4 C 0.075 3.925 5 N -0.624 5.624 6 C 0.449 3.551 7 N -0.579 5.579 8 C 0.129 3.871 9 C 0.037 3.963 10 N -0.538 5.538 11 C 0.062 3.938 12 C 0.021 3.979 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.040 3.960 22 C 0.136 3.864 23 S -0.207 6.207 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 16.101 -13.682 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 H 0.130 0.870 4 C -0.058 4.058 5 N -0.357 5.357 6 C 0.063 3.937 7 N -0.299 5.299 8 C 0.007 3.993 9 C -0.092 4.092 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.016 4.016 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.090 4.090 22 C 0.012 3.988 23 S 0.020 5.980 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.590 16.050 -12.969 20.945 hybrid contribution -1.194 -0.896 -0.418 1.550 sum -4.784 15.154 -13.387 20.778 Atomic orbital electron populations 1.21897 0.91336 1.03362 1.02661 1.24668 1.00356 1.02195 0.94297 0.87010 1.22492 0.97008 0.89794 0.96526 1.69823 1.28984 1.23359 1.13534 1.23443 0.90905 0.90050 0.89279 1.46270 1.52049 1.24804 1.06777 1.22068 1.02477 0.97459 0.77315 1.22703 0.95222 0.90448 1.00818 1.62088 1.55292 1.07278 1.01643 1.22341 0.98366 0.85374 1.00323 1.19247 0.97854 0.96964 0.87559 1.21129 1.49454 0.93750 0.91881 0.92789 1.24985 0.95220 0.97265 0.96769 1.69945 1.49711 1.32530 1.01056 0.86643 0.78741 0.85119 0.77411 1.20198 1.21251 1.20294 1.22485 0.99237 0.96320 0.90933 1.21769 0.96852 0.86337 0.93871 1.86681 1.63540 1.31169 1.16606 0.91456 0.91572 0.91028 0.89451 0.89650 0.90110 0.90019 0.94792 0.87204 0.96126 0.91651 0.95571 0.96178 0.92873 0.94939 0.89768 0.89007 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.08 37.16 0.34 -0.66 16 2 C -0.08 -0.76 3.99 -26.38 -0.11 -0.87 16 3 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.08 0.77 7.25 -4.71 -0.03 0.74 16 5 N -0.62 -8.57 9.89 -62.20 -0.62 -9.19 16 6 C 0.45 6.33 7.98 -89.83 -0.72 5.61 16 7 N -0.58 -8.27 3.08 -173.38 -0.53 -8.81 16 8 C 0.13 1.85 6.66 -3.36 -0.02 1.83 16 9 C 0.04 0.63 5.06 -3.46 -0.02 0.61 16 10 N -0.54 -9.47 4.78 -234.02 -1.12 -10.59 16 11 C 0.06 1.29 5.21 -3.82 -0.02 1.27 16 12 C 0.02 0.52 4.22 -27.88 -0.12 0.41 16 13 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.04 0.59 5.58 -3.70 -0.02 0.57 16 22 C 0.14 1.84 6.66 -3.61 -0.02 1.81 16 23 S -0.21 -2.57 21.07 -107.50 -2.27 -4.83 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.81 7.65 -51.93 -0.40 0.41 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.11 6.55 -51.93 -0.34 0.77 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 2.07 5.73 -51.93 -0.30 1.77 16 33 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.52 6.18 -51.93 -0.32 0.20 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 40 H 0.09 1.20 7.27 -51.93 -0.38 0.83 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -30.20 334.41 -11.70 -41.89 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.77 Total: -2.34 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.15 Total: -2.00 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -1.53 Total: -54.19 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.27 Total: -4.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.20 -11.70 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175804972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.151 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds