Wall clock time and date at job start Tue Mar 31 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 119.99789 * 2 1 4 4 H 1.48506 * 109.47121 * 240.00150 * 3 2 1 5 5 H 1.48504 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47391 * 120.00145 * 3 2 1 7 7 C 1.37871 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00610 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47287 * 175.68687 * 9 7 2 11 11 C 1.46900 * 111.00114 * 59.76223 * 10 9 7 12 12 C 1.50698 * 109.47428 * 72.10421 * 11 10 9 13 13 C 1.38648 * 120.78993 * 263.81752 * 12 11 10 14 14 C 1.38211 * 119.16043 * 179.79572 * 13 12 11 15 15 N 1.31869 * 120.76184 * 0.49318 * 14 13 12 16 16 C 1.31869 * 121.72933 * 359.73439 * 15 14 13 17 17 C 1.38201 * 120.76274 * 0.03014 * 16 15 14 18 18 C 1.46893 * 110.99960 * 295.80683 * 10 9 7 19 19 C 1.50708 * 109.47044 * 293.95474 * 18 10 9 20 20 C 1.38228 * 119.61836 * 95.00029 * 19 18 10 21 21 C 1.38626 * 119.15994 * 179.97438 * 20 19 18 22 22 C 1.38675 * 118.42146 * 0.02562 * 21 20 19 23 23 C 1.38180 * 119.16249 * 0.26998 * 22 21 20 24 24 N 1.31858 * 119.61669 * 274.98083 * 19 18 10 25 25 H 0.97000 * 119.99689 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47105 * 55.68193 * 9 7 2 27 27 H 1.09002 * 109.46834 * 295.68485 * 9 7 2 28 28 H 1.09001 * 109.46946 * 192.11157 * 11 10 9 29 29 H 1.09000 * 109.47164 * 312.10621 * 11 10 9 30 30 H 1.07992 * 120.41953 * 0.02562 * 13 12 11 31 31 H 1.07995 * 119.61679 * 180.25415 * 14 13 12 32 32 H 1.08005 * 119.61928 * 180.02562 * 16 15 14 33 33 H 1.08007 * 120.42140 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47228 * 173.96047 * 18 10 9 35 35 H 1.08994 * 109.47349 * 53.95174 * 18 10 9 36 36 H 1.07993 * 120.41532 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.78859 * 180.02562 * 21 20 19 38 38 H 1.07993 * 120.41861 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.61706 * 179.70655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 7 2.2024 -3.6136 -0.1062 11 6 3.1444 -3.6092 1.0210 12 6 2.4285 -4.0381 2.2757 13 6 1.9226 -3.0983 3.1607 14 6 1.2681 -3.5292 4.2992 15 7 1.1311 -4.8161 4.5522 16 6 1.6033 -5.7376 3.7355 17 6 2.2650 -5.3820 2.5755 18 6 2.9167 -3.5775 -1.3893 19 6 1.9442 -3.8295 -2.5128 20 6 1.3726 -2.7589 -3.1746 21 6 0.4798 -3.0017 -4.2069 22 6 0.1936 -4.3180 -4.5362 23 6 0.7992 -5.3368 -3.8257 24 7 1.6489 -5.0686 -2.8534 25 1 -0.4850 0.8401 0.0004 26 1 0.5681 -2.5236 -0.8507 27 1 0.6834 -2.5917 0.9242 28 1 3.9614 -4.3005 0.8143 29 1 3.5443 -2.6043 1.1564 30 1 2.0354 -2.0430 2.9612 31 1 0.8676 -2.8035 4.9915 32 1 1.4715 -6.7822 3.9760 33 1 2.6499 -6.1412 1.9108 34 1 3.6884 -4.3472 -1.3974 35 1 3.3781 -2.5988 -1.5209 36 1 1.6191 -1.7464 -2.8915 37 1 0.0182 -2.1850 -4.7420 38 1 -0.4969 -4.5440 -5.3352 39 1 0.5779 -6.3646 -4.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178388973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:45 Heat of formation + Delta-G solvation = 76.601521 kcal Electronic energy + Delta-G solvation = -21797.553469 eV Core-core repulsion = 18705.090959 eV Total energy + Delta-G solvation = -3092.462510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84741 -39.55348 -36.84528 -32.89070 -32.61173 -31.89769 -30.74806 -30.64825 -27.40195 -26.59738 -24.38569 -23.03879 -22.93993 -22.48149 -21.21172 -19.82797 -16.94737 -16.17823 -16.01252 -15.73782 -15.71157 -15.07884 -14.99619 -14.93068 -14.68514 -13.76183 -13.33721 -13.22646 -13.13662 -12.89984 -12.77492 -12.36034 -11.95822 -11.60489 -11.35409 -11.05282 -11.03305 -10.90122 -10.70551 -10.38903 -10.15130 -9.80768 -9.39390 -9.07006 -9.01723 -8.92102 -8.65311 -8.54968 -8.46315 -7.30066 -6.12992 -4.23743 1.54027 1.64885 1.75776 1.80756 3.18509 3.25641 3.27204 4.15635 4.29230 4.34822 4.78059 4.88740 5.07856 5.16532 5.20910 5.23162 5.29572 5.47824 5.50144 5.63745 5.66426 5.72027 5.90585 5.95416 6.08763 6.13134 6.27651 6.30270 6.35000 6.45531 6.53576 6.62256 6.69972 6.97902 7.09436 7.20242 7.23728 7.43571 7.80394 7.89772 8.10192 8.16788 8.41180 8.50720 8.86642 9.43058 10.91181 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.007369 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.259555 B = 3798.734547 C = 5782.294125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.182 3.818 10 N -0.527 5.527 11 C 0.092 3.908 12 C -0.014 4.014 13 C -0.146 4.146 14 C 0.086 3.914 15 N -0.497 5.497 16 C 0.082 3.918 17 C -0.157 4.157 18 C 0.110 3.890 19 C 0.152 3.848 20 C -0.141 4.141 21 C -0.083 4.083 22 C -0.185 4.185 23 C 0.086 3.914 24 N -0.474 5.474 25 H 0.263 0.737 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -7.058 -2.953 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.075 0.925 9 C 0.057 3.943 10 N -0.251 5.251 11 C -0.036 4.036 12 C -0.023 4.023 13 C -0.167 4.167 14 C -0.070 4.070 15 N -0.207 5.207 16 C -0.075 4.075 17 C -0.177 4.177 18 C -0.019 4.019 19 C 0.014 3.986 20 C -0.161 4.161 21 C -0.109 4.109 22 C -0.206 4.206 23 C -0.071 4.071 24 N -0.183 5.183 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.396 -8.320 -1.727 9.151 hybrid contribution 0.587 2.851 -1.379 3.221 sum 3.983 -5.470 -3.106 7.445 Atomic orbital electron populations 1.69945 1.05943 1.26972 1.49240 1.24912 0.94656 0.98850 0.94893 0.86810 0.79788 0.83638 0.78726 1.20260 1.21228 1.20187 1.21615 0.93095 0.91906 1.52552 0.92466 1.19860 0.91081 0.85089 0.98285 1.62484 1.16364 1.47384 0.98841 1.20963 0.93458 1.00726 0.88455 1.20239 0.94489 0.92815 0.94730 1.22256 0.98046 1.01691 0.94670 1.22635 0.96144 0.92272 0.95927 1.67571 1.18749 1.02163 1.32202 1.22571 0.95073 0.98672 0.91180 1.21977 1.00984 0.96601 0.98131 1.20792 0.93104 1.00533 0.87440 1.21122 0.95241 0.87779 0.94449 1.22215 0.96879 1.01596 0.95393 1.21538 0.96216 0.96759 0.96357 1.22005 1.02362 0.94026 1.02170 1.22594 0.93364 0.99164 0.92019 1.67464 1.14082 1.23039 1.13755 0.92676 0.94506 0.95108 0.91564 0.91846 0.84166 0.83405 0.83607 0.85289 0.91112 0.92112 0.83925 0.85472 0.85697 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 13.29 55.43 0.74 -23.48 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.88 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.55 -13.52 7.35 -34.45 -0.25 -13.78 16 8 H 0.06 1.37 5.95 -52.48 -0.31 1.06 16 9 C 0.18 4.35 4.63 -4.98 -0.02 4.33 16 10 N -0.53 -10.67 4.65 -238.97 -1.11 -11.78 16 11 C 0.09 1.65 4.98 -4.98 -0.02 1.63 16 12 C -0.01 -0.25 4.91 -104.32 -0.51 -0.76 16 13 C -0.15 -2.66 8.74 -39.44 -0.34 -3.00 16 14 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 15 N -0.50 -8.63 10.36 -13.25 -0.14 -8.76 16 16 C 0.08 1.28 11.18 -17.55 -0.20 1.09 16 17 C -0.16 -2.51 9.84 -39.44 -0.39 -2.90 16 18 C 0.11 2.05 5.11 -4.98 -0.03 2.02 16 19 C 0.15 2.88 5.65 -82.58 -0.47 2.41 16 20 C -0.14 -2.59 8.25 -39.44 -0.33 -2.92 16 21 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 22 C -0.19 -2.63 10.11 -39.44 -0.40 -3.03 16 23 C 0.09 1.31 11.18 -17.55 -0.20 1.12 16 24 N -0.47 -8.64 10.27 -9.47 -0.10 -8.74 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.04 0.98 6.15 -51.93 -0.32 0.66 16 27 H 0.03 0.82 6.71 -51.93 -0.35 0.47 16 28 H 0.07 1.04 7.80 -51.93 -0.40 0.63 16 29 H 0.06 1.22 5.99 -51.93 -0.31 0.91 16 30 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.15 1.82 8.06 -52.48 -0.42 1.39 16 33 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 35 H 0.06 1.17 6.57 -51.93 -0.34 0.82 16 36 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 37 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -28.97 327.98 -9.50 -38.47 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.96 Total: 7.05 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.85 Total: -12.52 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.61 Total: -52.77 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.97 -9.50 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178388973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.067 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds