Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 119.99789 * 2 1 4 4 H 1.48506 * 109.47121 * 240.00150 * 3 2 1 5 5 H 1.48504 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47391 * 120.00145 * 3 2 1 7 7 C 1.37871 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00610 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47287 * 175.68687 * 9 7 2 11 11 C 1.46900 * 111.00114 * 59.76223 * 10 9 7 12 12 C 1.50698 * 109.47428 * 72.10421 * 11 10 9 13 13 C 1.38648 * 120.78993 * 263.81752 * 12 11 10 14 14 C 1.38211 * 119.16043 * 179.79572 * 13 12 11 15 15 N 1.31869 * 120.76184 * 0.49318 * 14 13 12 16 16 C 1.31869 * 121.72933 * 359.73439 * 15 14 13 17 17 C 1.38201 * 120.76274 * 0.03014 * 16 15 14 18 18 C 1.46893 * 110.99960 * 295.80683 * 10 9 7 19 19 C 1.50708 * 109.47044 * 293.95474 * 18 10 9 20 20 C 1.38228 * 119.61836 * 95.00029 * 19 18 10 21 21 C 1.38626 * 119.15994 * 179.97438 * 20 19 18 22 22 C 1.38675 * 118.42146 * 0.02562 * 21 20 19 23 23 C 1.38180 * 119.16249 * 0.26998 * 22 21 20 24 24 N 1.31858 * 119.61669 * 274.98083 * 19 18 10 25 25 H 0.97000 * 119.99689 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47105 * 55.68193 * 9 7 2 27 27 H 1.09002 * 109.46834 * 295.68485 * 9 7 2 28 28 H 1.09001 * 109.46946 * 192.11157 * 11 10 9 29 29 H 1.09000 * 109.47164 * 312.10621 * 11 10 9 30 30 H 1.07992 * 120.41953 * 0.02562 * 13 12 11 31 31 H 1.07995 * 119.61679 * 180.25415 * 14 13 12 32 32 H 1.08005 * 119.61928 * 180.02562 * 16 15 14 33 33 H 1.08007 * 120.42140 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47228 * 173.96047 * 18 10 9 35 35 H 1.08994 * 109.47349 * 53.95174 * 18 10 9 36 36 H 1.07993 * 120.41532 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.78859 * 180.02562 * 21 20 19 38 38 H 1.07993 * 120.41861 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.61706 * 179.70655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 7 2.2024 -3.6136 -0.1062 11 6 3.1444 -3.6092 1.0210 12 6 2.4285 -4.0381 2.2757 13 6 1.9226 -3.0983 3.1607 14 6 1.2681 -3.5292 4.2992 15 7 1.1311 -4.8161 4.5522 16 6 1.6033 -5.7376 3.7355 17 6 2.2650 -5.3820 2.5755 18 6 2.9167 -3.5775 -1.3893 19 6 1.9442 -3.8295 -2.5128 20 6 1.3726 -2.7589 -3.1746 21 6 0.4798 -3.0017 -4.2069 22 6 0.1936 -4.3180 -4.5362 23 6 0.7992 -5.3368 -3.8257 24 7 1.6489 -5.0686 -2.8534 25 1 -0.4850 0.8401 0.0004 26 1 0.5681 -2.5236 -0.8507 27 1 0.6834 -2.5917 0.9242 28 1 3.9614 -4.3005 0.8143 29 1 3.5443 -2.6043 1.1564 30 1 2.0354 -2.0430 2.9612 31 1 0.8676 -2.8035 4.9915 32 1 1.4715 -6.7822 3.9760 33 1 2.6499 -6.1412 1.9108 34 1 3.6884 -4.3472 -1.3974 35 1 3.3781 -2.5988 -1.5209 36 1 1.6191 -1.7464 -2.8915 37 1 0.0182 -2.1850 -4.7420 38 1 -0.4969 -4.5440 -5.3352 39 1 0.5779 -6.3646 -4.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178388973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = 58.885397 kcal Electronic energy + Delta-G solvation = -21798.321698 eV Core-core repulsion = 18705.090959 eV Total energy + Delta-G solvation = -3093.230738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19015 -40.85464 -38.41452 -34.68788 -34.08350 -33.22277 -32.10763 -31.97810 -29.24652 -27.98026 -26.12514 -24.37197 -24.25180 -23.95228 -22.54169 -21.44574 -18.71605 -17.56364 -17.38909 -17.17642 -17.01982 -16.58330 -16.52531 -16.37121 -16.15203 -15.40382 -14.75537 -14.65846 -14.45500 -14.24731 -14.13477 -13.93375 -13.42385 -13.14313 -12.90442 -12.80204 -12.66782 -12.42114 -12.20233 -12.07595 -11.96704 -11.71684 -10.70418 -10.54946 -10.44840 -10.36641 -10.23643 -9.94174 -9.79807 -9.00430 -8.10640 -6.28649 0.24747 0.34000 0.44595 0.49694 1.37926 1.39802 1.45947 2.38396 2.82409 3.03604 3.15224 3.51363 3.59981 3.67016 3.91915 3.97727 4.07835 4.09669 4.32323 4.35598 4.35726 4.36195 4.57342 4.60928 4.72966 4.80651 4.91332 4.93687 5.00590 5.03422 5.16209 5.27535 5.34647 5.40800 5.42335 5.61321 5.79223 5.90951 5.92177 6.06059 6.25337 6.44963 6.90416 7.10196 7.20614 7.41761 8.91350 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.007369 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.259555 B = 3798.734547 C = 5782.294125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.207 3.793 10 N -0.528 5.528 11 C 0.095 3.905 12 C -0.030 4.030 13 C -0.165 4.165 14 C 0.082 3.918 15 N -0.511 5.511 16 C 0.084 3.916 17 C -0.155 4.155 18 C 0.113 3.887 19 C 0.131 3.869 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.172 4.172 23 C 0.081 3.919 24 N -0.494 5.494 25 H 0.262 0.738 26 H 0.008 0.992 27 H -0.002 1.002 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 -8.789 -3.845 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.252 5.252 11 C -0.033 4.033 12 C -0.038 4.038 13 C -0.185 4.185 14 C -0.074 4.074 15 N -0.221 5.221 16 C -0.072 4.072 17 C -0.175 4.175 18 C -0.015 4.015 19 C -0.007 4.007 20 C -0.186 4.186 21 C -0.114 4.114 22 C -0.192 4.192 23 C -0.076 4.076 24 N -0.204 5.204 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.016 0.984 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.138 0.862 31 H 0.182 0.818 32 H 0.200 0.800 33 H 0.170 0.830 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.165 0.835 38 H 0.185 0.815 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.791 -10.052 -2.615 11.057 hybrid contribution 0.439 3.263 -1.161 3.491 sum 4.230 -6.790 -3.776 8.846 Atomic orbital electron populations 1.70075 1.07441 1.27496 1.50975 1.25607 0.95249 1.01988 0.94805 0.85851 0.78548 0.79795 0.78966 1.19496 1.21489 1.19638 1.21783 0.93201 0.92285 1.50943 0.92131 1.19360 0.91175 0.86262 0.95141 1.62388 1.17009 1.45396 1.00370 1.20994 0.93708 1.00644 0.87935 1.20349 0.95070 0.93858 0.94568 1.22184 0.99543 1.00915 0.95862 1.22881 0.95790 0.92900 0.95838 1.67656 1.19300 1.02268 1.32877 1.23181 0.93577 1.00036 0.90421 1.22216 1.00575 0.96057 0.98613 1.20784 0.93487 1.00474 0.86743 1.21075 0.96189 0.88400 0.94987 1.22109 0.98824 1.00351 0.97272 1.21865 0.95361 0.98616 0.95578 1.22432 1.01759 0.92693 1.02290 1.23291 0.92139 1.01284 0.90912 1.67458 1.15396 1.22393 1.15142 0.92930 0.97432 0.98375 0.88685 0.93526 0.86174 0.81758 0.80006 0.83012 0.89152 0.93403 0.86570 0.83488 0.81515 0.79989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.29 13.29 21.45 0.28 -52.00 16 2 C 0.02 1.24 5.46 84.65 0.46 1.71 16 3 Si 0.94 41.59 29.54 68.60 2.03 43.62 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -27.51 7.35 25.60 0.19 -27.32 16 8 H 0.06 2.98 5.95 -2.91 -0.02 2.96 16 9 C 0.21 10.31 4.63 85.56 0.40 10.71 16 10 N -0.53 -21.70 4.65 -909.98 -4.23 -25.93 16 11 C 0.09 3.41 4.98 85.56 0.43 3.83 16 12 C -0.03 -1.06 4.91 -19.67 -0.10 -1.16 16 13 C -0.16 -6.15 8.74 22.36 0.20 -5.96 16 14 C 0.08 2.80 11.18 84.68 0.95 3.74 16 15 N -0.51 -17.14 10.36 -195.84 -2.03 -19.17 16 16 C 0.08 2.46 11.18 84.68 0.95 3.41 16 17 C -0.15 -4.69 9.84 22.36 0.22 -4.47 16 18 C 0.11 4.27 5.11 85.56 0.44 4.70 16 19 C 0.13 4.98 5.65 42.55 0.24 5.22 16 20 C -0.16 -6.24 8.25 22.36 0.18 -6.05 16 21 C -0.09 -2.70 10.18 22.47 0.23 -2.47 16 22 C -0.17 -4.38 10.11 22.36 0.23 -4.15 16 23 C 0.08 2.25 11.18 84.67 0.95 3.20 16 24 N -0.49 -17.39 10.27 -183.87 -1.89 -19.28 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.01 0.42 6.15 -2.39 -0.01 0.41 16 27 H 0.00 -0.10 6.71 -2.39 -0.02 -0.12 16 28 H 0.09 2.84 7.80 -2.39 -0.02 2.82 16 29 H 0.05 1.83 5.99 -2.39 -0.01 1.81 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.17 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 34 H 0.09 2.98 7.86 -2.39 -0.02 2.96 16 35 H 0.05 1.89 6.57 -2.39 -0.02 1.88 16 36 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -64.25 327.98 1.16 -63.09 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 1.05 Total: 24.75 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.95 Total: -15.07 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -7.86 Total: -116.38 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -64.25 1.16 -63.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178388973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.973 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds