Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35322 * 126.12220 * 2 1 4 4 C 1.50692 * 126.03962 * 0.02596 * 3 2 1 5 5 H 1.09006 * 109.47720 * 39.71323 * 4 3 2 6 6 C 1.53006 * 109.47219 * 279.71220 * 4 3 2 7 7 N 1.46905 * 109.47193 * 159.71255 * 4 3 2 8 8 C 1.46902 * 110.99800 * 204.99693 * 7 4 3 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 4 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 S 1.81009 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.76195 * 99.99997 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00231 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47102 * 90.00382 * 16 14 12 18 18 H 1.48500 * 109.47585 * 210.00423 * 16 14 12 19 19 H 1.48506 * 109.47219 * 330.00545 * 16 14 12 20 20 C 1.39872 * 107.91774 * 179.75659 * 3 2 1 21 21 N 1.30836 * 108.20071 * 0.24575 * 20 3 2 22 22 N 1.34949 * 126.13161 * 180.17754 * 2 1 3 23 23 C 1.46500 * 126.03531 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47055 * 90.00179 * 1 2 3 25 25 H 1.09006 * 109.46604 * 209.99758 * 1 2 3 26 26 H 1.08997 * 109.47623 * 329.99868 * 1 2 3 27 27 H 1.08998 * 109.47049 * 300.00332 * 6 4 3 28 28 H 1.09001 * 109.47090 * 60.00028 * 6 4 3 29 29 H 1.09002 * 109.47182 * 180.02562 * 6 4 3 30 30 H 1.00898 * 110.99743 * 81.04743 * 7 4 3 31 31 H 1.09000 * 109.47263 * 60.00269 * 8 7 4 32 32 H 1.09001 * 109.47582 * 299.99548 * 8 7 4 33 33 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 34 34 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 35 35 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 36 36 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 37 37 H 0.97009 * 119.99706 * 179.97438 * 15 14 12 38 38 H 1.07995 * 125.89582 * 180.26197 * 20 3 2 39 39 H 1.08997 * 109.47037 * 270.30988 * 23 22 2 40 40 H 1.09000 * 109.46787 * 30.31504 * 23 22 2 41 41 H 1.08998 * 109.46685 * 150.30905 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 1.8431 2.5276 0.0006 5 1 0.9795 2.6312 0.6575 6 6 1.4547 2.9389 -1.4211 7 7 2.9299 3.3915 0.4806 8 6 2.3993 4.6360 1.0531 9 6 3.5582 5.5074 1.5416 10 6 3.0056 6.8037 2.1373 11 16 4.3766 7.8343 2.7159 12 6 3.4789 9.2184 3.3349 13 1 2.4004 9.2311 3.2793 14 6 4.1577 10.2917 3.8949 15 7 5.4722 10.2759 3.9630 16 14 3.2061 11.7587 4.5518 17 1 2.8814 11.5371 5.9838 18 1 4.0315 12.9856 4.4155 19 1 1.9486 11.9197 3.7783 20 6 3.6334 0.6561 0.0057 21 7 3.6334 -0.6522 0.0036 22 7 2.3027 -1.0899 -0.0034 23 6 1.8541 -2.4845 -0.0072 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.3183 2.8353 -2.0780 28 1 0.6483 2.2979 -1.7773 29 1 1.1212 3.9767 -1.4207 30 1 3.5902 3.5857 -0.2572 31 1 1.7443 4.3998 1.8917 32 1 1.8351 5.1746 0.2918 33 1 4.1221 4.9685 2.3030 34 1 4.2136 5.7436 0.7033 35 1 2.4420 7.3424 1.3756 36 1 2.3500 6.5679 2.9756 37 1 5.9467 11.0262 4.3540 38 1 4.5082 1.2894 0.0111 39 1 1.7379 -2.8316 1.0195 40 1 0.8981 -2.5572 -0.5258 41 1 2.5925 -3.1023 -0.5182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183307155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = 56.120785 kcal Electronic energy + Delta-G solvation = -19185.462609 eV Core-core repulsion = 16227.555939 eV Total energy + Delta-G solvation = -2957.906670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44279 -37.34853 -33.99097 -33.40180 -32.39723 -31.71247 -29.20584 -27.12506 -26.81971 -25.66810 -24.55859 -22.60214 -21.14656 -20.48208 -19.33338 -17.41798 -16.69997 -15.93202 -15.64366 -15.07530 -14.77476 -14.68537 -14.30868 -14.10010 -13.78182 -13.61566 -13.21514 -13.08351 -12.95358 -12.75032 -12.54302 -12.37666 -12.07001 -12.03695 -11.51778 -11.36638 -11.25234 -11.04428 -10.74929 -10.60969 -10.53761 -10.35410 -9.48694 -9.34214 -9.02483 -8.46045 -8.26554 -8.24209 -6.48185 -6.19250 -3.88953 1.72628 2.37236 2.75993 3.23989 3.24550 3.31308 3.60151 4.15401 4.26439 4.37801 4.46527 4.81153 4.82670 4.90579 5.04049 5.09408 5.15025 5.16350 5.16657 5.21598 5.34939 5.43226 5.47840 5.53347 5.61364 5.70398 5.80954 5.83212 5.96607 6.02064 6.09544 6.21607 6.40021 6.61764 6.67371 6.80569 6.87374 7.14869 7.45341 7.63870 7.65633 8.40108 9.26915 10.88913 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.040803 B = 0.002423 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.063343 B =11551.393741 C =11829.411824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.077 3.923 3 C -0.217 4.217 4 C 0.164 3.836 5 H 0.079 0.921 6 C -0.176 4.176 7 N -0.682 5.682 8 C 0.065 3.935 9 C -0.096 4.096 10 C -0.111 4.111 11 S -0.133 6.133 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.076 3.924 21 N -0.306 5.306 22 N -0.380 5.380 23 C 0.103 3.897 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.341 0.659 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.184 0.816 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -22.615 -10.720 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.229 4.229 4 C 0.053 3.947 5 H 0.097 0.903 6 C -0.236 4.236 7 N -0.312 5.312 8 C -0.065 4.065 9 C -0.134 4.134 10 C -0.261 4.261 11 S 0.095 5.905 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.139 4.139 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.110 4.110 21 N -0.126 5.126 22 N -0.163 5.163 23 C -0.038 4.038 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.201 0.799 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.099 -24.229 -10.069 27.771 hybrid contribution -2.609 2.316 -0.291 3.501 sum -11.709 -21.913 -10.361 26.919 Atomic orbital electron populations 1.20441 0.87683 1.03788 1.03028 1.20713 0.94237 0.87193 1.02901 1.19717 0.92637 0.94534 1.15987 1.19648 0.93233 0.87844 0.94016 0.90321 1.22487 1.01954 1.01266 0.97847 1.60447 1.15933 1.16914 1.37908 1.22034 0.97286 0.88890 0.98301 1.21244 0.97041 0.94106 1.01056 1.23217 1.02730 0.98340 1.01783 1.84643 1.10090 1.18044 1.77744 1.22693 0.94629 1.03593 1.45452 0.91011 1.25019 0.95120 0.98285 0.95455 1.70031 1.06390 1.31463 1.42652 0.86171 0.79447 0.80736 0.79193 1.20291 1.20788 1.19728 1.23688 0.98006 0.91327 0.97987 1.77383 0.96260 1.13328 1.25652 1.48344 1.04072 1.05642 1.58242 1.21761 1.00758 0.78225 1.03106 0.90424 0.91329 0.89632 0.92362 0.92396 0.92442 0.84050 0.91211 0.95338 0.90730 0.91831 0.92390 0.92183 0.92348 0.79866 0.91024 0.89861 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.68 36.01 0.35 -0.20 16 2 C 0.08 0.75 6.93 -82.26 -0.57 0.18 16 3 C -0.22 -2.41 5.24 -105.05 -0.55 -2.96 16 4 C 0.16 1.68 2.72 -68.86 -0.19 1.49 16 5 H 0.08 0.81 7.14 -51.93 -0.37 0.44 16 6 C -0.18 -1.57 9.14 37.16 0.34 -1.23 16 7 N -0.68 -7.95 5.69 -107.94 -0.61 -8.57 16 8 C 0.07 0.86 5.48 -3.82 -0.02 0.84 16 9 C -0.10 -1.56 5.48 -26.73 -0.15 -1.71 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 11 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 12 C -0.52 -14.95 9.50 30.94 0.29 -14.66 16 13 H 0.07 2.01 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 16 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.08 0.93 11.39 -17.36 -0.20 0.73 16 21 N -0.31 -3.98 12.57 30.62 0.39 -3.60 16 22 N -0.38 -3.96 4.01 -63.88 -0.26 -4.22 16 23 C 0.10 0.62 11.09 59.85 0.66 1.28 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.32 7.74 -51.93 -0.40 -0.09 16 26 H 0.08 0.50 7.37 -51.93 -0.38 0.12 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 30 H 0.34 3.71 8.47 -39.29 -0.33 3.38 16 31 H 0.07 0.93 8.06 -51.93 -0.42 0.52 16 32 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.18 2.01 7.98 -52.49 -0.42 1.59 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.29 7.68 -51.93 -0.40 -0.11 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -33.86 354.34 -8.50 -42.36 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.85 Total: -0.25 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 0.09 Total: -16.38 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.25 Total: -41.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.86 -8.50 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183307155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.476 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds