Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46933 * 2 1 4 4 N 1.32606 * 120.41090 * 90.00192 * 3 2 1 5 5 C 1.31717 * 121.02816 * 179.97438 * 4 3 2 6 6 N 1.31812 * 121.87649 * 359.97438 * 5 4 3 7 7 C 1.32906 * 120.71522 * 0.02562 * 6 5 4 8 8 N 1.38674 * 120.54585 * 179.97438 * 7 6 5 9 9 C 1.46892 * 111.00107 * 107.24184 * 8 7 6 10 10 C 1.50702 * 109.47277 * 164.04565 * 9 8 7 11 11 H 1.08004 * 119.99529 * 3.66735 * 10 9 8 12 12 C 1.37878 * 120.00395 * 183.66719 * 10 9 8 13 13 N 1.31514 * 119.99782 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99834 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47265 * 60.00267 * 14 12 10 16 16 H 1.48505 * 109.46619 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47254 * 299.99813 * 14 12 10 18 18 C 1.46903 * 110.99904 * 343.28869 * 8 7 6 19 19 C 1.53001 * 109.46761 * 284.63441 * 18 8 7 20 20 O 1.42907 * 109.47696 * 64.66998 * 19 18 8 21 21 C 1.42891 * 114.00125 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.41517 * 269.97956 * 3 2 1 23 23 F 1.35101 * 120.85554 * 359.97438 * 22 3 2 24 24 H 1.08994 * 109.47022 * 60.00017 * 1 2 3 25 25 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46977 * 299.99486 * 1 2 3 27 27 H 1.09003 * 109.47488 * 240.00425 * 2 1 3 28 28 H 1.09000 * 109.47466 * 119.99949 * 2 1 3 29 29 H 1.08001 * 119.06211 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47447 * 284.03974 * 9 8 7 31 31 H 1.09002 * 109.47512 * 44.04368 * 9 8 7 32 32 H 0.97000 * 119.99895 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47189 * 44.62667 * 18 8 7 34 34 H 1.08996 * 109.47478 * 164.63618 * 18 8 7 35 35 H 1.08999 * 109.47203 * 184.66811 * 19 18 8 36 36 H 1.09004 * 109.47266 * 304.66761 * 19 18 8 37 37 H 1.09002 * 109.47285 * 299.99930 * 21 20 19 38 38 H 1.09003 * 109.47393 * 60.00149 * 21 20 19 39 39 H 1.09003 * 109.47213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2561 2.0538 1.1436 5 6 2.6956 3.2954 1.1578 6 7 2.9325 3.9626 0.0460 7 6 2.7328 3.3978 -1.1404 8 7 2.9828 4.1033 -2.3078 9 6 4.1982 3.6115 -2.9701 10 6 4.2298 4.1059 -4.3934 11 1 3.4583 4.7718 -4.7509 12 6 5.2436 3.7082 -5.2390 13 7 6.1833 2.8978 -4.8034 14 14 5.2823 4.3205 -7.0034 15 1 5.3695 5.8029 -7.0111 16 1 6.4649 3.7520 -7.6988 17 1 4.0437 3.8939 -7.7027 18 6 3.0747 5.5452 -2.0421 19 6 1.6721 6.1119 -1.8128 20 8 1.1138 5.5375 -0.6294 21 6 -0.2020 6.0028 -0.3225 22 6 2.2660 2.0806 -1.1921 23 9 2.0504 1.4680 -2.3768 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8666 3.7805 2.1074 30 1 5.0759 3.9791 -2.4383 31 1 4.1997 2.5215 -2.9640 32 1 6.8963 2.6177 -5.3984 33 1 3.6839 5.7129 -1.1540 34 1 3.5327 6.0436 -2.8964 35 1 1.7318 7.1942 -1.6981 36 1 1.0390 5.8715 -2.6670 37 1 -0.1807 7.0828 -0.1767 38 1 -0.8743 5.7604 -1.1456 39 1 -0.5550 5.5196 0.5886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218067257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = -30.601067 kcal Electronic energy + Delta-G solvation = -23385.074907 eV Core-core repulsion = 19857.194520 eV Total energy + Delta-G solvation = -3527.880388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.29136 -40.56323 -38.00685 -36.59293 -34.42125 -32.80383 -31.47647 -30.36220 -29.23723 -26.79258 -26.02609 -24.64884 -23.52811 -22.38967 -22.10720 -20.15311 -17.93750 -17.05888 -16.75079 -16.33671 -15.98081 -15.67043 -15.33304 -14.96718 -14.64621 -14.26752 -14.00617 -13.68038 -13.65764 -13.32974 -12.89142 -12.70543 -12.33165 -12.29034 -11.80135 -11.62998 -11.44943 -11.23274 -11.04075 -10.95420 -10.87952 -10.84377 -10.54564 -10.31291 -9.96535 -9.50796 -9.34756 -8.85597 -8.70644 -8.54993 -7.60401 -6.15936 -4.19692 1.28648 1.47918 3.27343 3.31958 3.34261 3.96048 4.11241 4.16226 4.31344 4.36065 4.56268 4.74771 5.06259 5.18915 5.20900 5.35191 5.35756 5.44767 5.50248 5.60326 5.66047 5.74317 5.77077 5.84285 5.91410 5.95101 6.14842 6.22134 6.26780 6.50901 6.69793 6.90980 7.06917 7.28601 7.48381 7.61107 7.76382 7.91418 8.23182 8.55152 8.84505 9.44740 10.94866 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.006300 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.732154 B = 4443.333388 C = 5461.726761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C 0.147 3.853 4 N -0.530 5.530 5 C 0.301 3.699 6 N -0.514 5.514 7 C 0.361 3.639 8 N -0.469 5.469 9 C 0.201 3.799 10 C -0.516 4.516 11 H 0.067 0.933 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.061 3.939 19 C 0.067 3.933 20 O -0.373 6.373 21 C 0.032 3.968 22 C -0.009 4.009 23 F -0.114 7.114 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.190 0.810 30 H 0.008 0.992 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 0.817 9.760 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.002 3.998 4 N -0.247 5.247 5 C 0.012 3.988 6 N -0.234 5.234 7 C 0.119 3.881 8 N -0.187 5.187 9 C 0.079 3.921 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.067 4.067 19 C -0.010 4.010 20 O -0.291 6.291 21 C -0.065 4.065 22 C -0.036 4.036 23 F -0.092 7.092 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.207 0.793 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.970 0.964 10.216 14.307 hybrid contribution 0.234 0.251 -1.648 1.683 sum -9.735 1.214 8.568 13.025 Atomic orbital electron populations 1.21663 0.93838 1.02060 1.02352 1.20440 0.96758 0.89882 1.04046 1.21520 0.94252 0.97100 0.86888 1.68175 1.16936 1.11236 1.28360 1.24534 0.90932 0.86826 0.96546 1.68443 1.18676 1.38460 0.97794 1.20487 0.89225 0.88403 0.90018 1.59518 1.39461 1.04408 1.15283 1.19970 0.81362 0.96822 0.93936 1.20969 1.10094 1.29675 0.94696 0.91500 1.24969 0.95253 0.94917 0.99063 1.69942 1.13192 1.33603 1.36465 0.86465 0.77583 0.79004 0.83834 1.20092 1.21197 1.20009 1.22168 0.94974 0.87078 1.02439 1.22651 0.95399 0.95811 0.87136 1.88095 1.29330 1.67368 1.44310 1.22631 0.85425 0.98291 1.00167 1.18792 1.08475 0.93380 0.82981 1.91519 1.92344 1.81971 1.43396 0.92485 0.91804 0.92297 0.89714 0.89421 0.79305 0.97387 0.94106 0.92514 0.91356 0.87749 0.93400 0.93126 0.94663 0.94789 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.07 -0.99 6.11 -27.88 -0.17 -1.16 16 3 C 0.15 2.52 6.07 -82.26 -0.50 2.02 16 4 N -0.53 -8.83 10.37 -10.84 -0.11 -8.94 16 5 C 0.30 4.92 12.28 -92.21 -1.13 3.78 16 6 N -0.51 -9.71 6.79 -13.74 -0.09 -9.80 16 7 C 0.36 7.53 4.95 -154.64 -0.77 6.76 16 8 N -0.47 -10.42 4.28 -174.29 -0.75 -11.16 16 9 C 0.20 5.19 4.55 -4.98 -0.02 5.17 16 10 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 16 11 H 0.07 1.77 7.58 -52.48 -0.40 1.37 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 14 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.06 1.17 5.17 -3.82 -0.02 1.15 16 19 C 0.07 1.10 6.26 37.16 0.23 1.33 16 20 O -0.37 -6.25 7.63 -35.23 -0.27 -6.52 16 21 C 0.03 0.41 11.01 101.05 1.11 1.52 16 22 C -0.01 -0.18 6.87 -38.98 -0.27 -0.45 16 23 F -0.11 -2.42 15.75 2.25 0.04 -2.39 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.19 2.36 8.06 -52.49 -0.42 1.93 16 30 H 0.01 0.23 8.05 -51.93 -0.42 -0.19 16 31 H 0.04 1.15 6.99 -51.93 -0.36 0.79 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.07 1.33 7.02 -51.93 -0.36 0.97 16 34 H 0.10 2.04 6.98 -51.93 -0.36 1.68 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -30.45 329.98 -7.72 -38.17 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.67 Total: -1.29 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.55 Total: 6.15 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.22 Total: -55.09 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.27 Total: -6.52 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.45 -7.72 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218067257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.570 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds