Wall clock time and date at job start Tue Mar 31 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46933 * 2 1 4 4 N 1.32606 * 120.41090 * 90.00192 * 3 2 1 5 5 C 1.31717 * 121.02816 * 179.97438 * 4 3 2 6 6 N 1.31812 * 121.87649 * 359.97438 * 5 4 3 7 7 C 1.32906 * 120.71522 * 0.02562 * 6 5 4 8 8 N 1.38674 * 120.54585 * 179.97438 * 7 6 5 9 9 C 1.46892 * 111.00107 * 107.24184 * 8 7 6 10 10 C 1.50702 * 109.47277 * 164.04565 * 9 8 7 11 11 H 1.08004 * 119.99529 * 3.66735 * 10 9 8 12 12 C 1.37878 * 120.00395 * 183.66719 * 10 9 8 13 13 N 1.31514 * 119.99782 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99834 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47265 * 60.00267 * 14 12 10 16 16 H 1.48505 * 109.46619 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47254 * 299.99813 * 14 12 10 18 18 C 1.46903 * 110.99904 * 343.28869 * 8 7 6 19 19 C 1.53001 * 109.46761 * 284.63441 * 18 8 7 20 20 O 1.42907 * 109.47696 * 64.66998 * 19 18 8 21 21 C 1.42891 * 114.00125 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.41517 * 269.97956 * 3 2 1 23 23 F 1.35101 * 120.85554 * 359.97438 * 22 3 2 24 24 H 1.08994 * 109.47022 * 60.00017 * 1 2 3 25 25 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46977 * 299.99486 * 1 2 3 27 27 H 1.09003 * 109.47488 * 240.00425 * 2 1 3 28 28 H 1.09000 * 109.47466 * 119.99949 * 2 1 3 29 29 H 1.08001 * 119.06211 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47447 * 284.03974 * 9 8 7 31 31 H 1.09002 * 109.47512 * 44.04368 * 9 8 7 32 32 H 0.97000 * 119.99895 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47189 * 44.62667 * 18 8 7 34 34 H 1.08996 * 109.47478 * 164.63618 * 18 8 7 35 35 H 1.08999 * 109.47203 * 184.66811 * 19 18 8 36 36 H 1.09004 * 109.47266 * 304.66761 * 19 18 8 37 37 H 1.09002 * 109.47285 * 299.99930 * 21 20 19 38 38 H 1.09003 * 109.47393 * 60.00149 * 21 20 19 39 39 H 1.09003 * 109.47213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2561 2.0538 1.1436 5 6 2.6956 3.2954 1.1578 6 7 2.9325 3.9626 0.0460 7 6 2.7328 3.3978 -1.1404 8 7 2.9828 4.1033 -2.3078 9 6 4.1982 3.6115 -2.9701 10 6 4.2298 4.1059 -4.3934 11 1 3.4583 4.7718 -4.7509 12 6 5.2436 3.7082 -5.2390 13 7 6.1833 2.8978 -4.8034 14 14 5.2823 4.3205 -7.0034 15 1 5.3695 5.8029 -7.0111 16 1 6.4649 3.7520 -7.6988 17 1 4.0437 3.8939 -7.7027 18 6 3.0747 5.5452 -2.0421 19 6 1.6721 6.1119 -1.8128 20 8 1.1138 5.5375 -0.6294 21 6 -0.2020 6.0028 -0.3225 22 6 2.2660 2.0806 -1.1921 23 9 2.0504 1.4680 -2.3768 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8666 3.7805 2.1074 30 1 5.0759 3.9791 -2.4383 31 1 4.1997 2.5215 -2.9640 32 1 6.8963 2.6177 -5.3984 33 1 3.6839 5.7129 -1.1540 34 1 3.5327 6.0436 -2.8964 35 1 1.7318 7.1942 -1.6981 36 1 1.0390 5.8715 -2.6670 37 1 -0.1807 7.0828 -0.1767 38 1 -0.8743 5.7604 -1.1456 39 1 -0.5550 5.5196 0.5886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218067257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:33 Heat of formation + Delta-G solvation = -48.757865 kcal Electronic energy + Delta-G solvation = -23385.862245 eV Core-core repulsion = 19857.194520 eV Total energy + Delta-G solvation = -3528.667725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.87736 -42.01813 -39.42850 -38.00518 -35.76302 -34.78236 -32.89415 -31.73230 -30.80022 -28.62197 -27.15923 -25.91533 -25.16716 -24.03123 -23.50381 -21.62467 -19.39102 -18.86108 -18.37886 -17.92834 -17.33926 -17.15832 -16.76685 -16.49069 -16.20557 -15.66613 -15.32030 -15.15908 -14.87359 -14.74459 -14.54488 -14.30728 -13.99129 -13.53781 -13.25952 -12.97230 -12.87964 -12.75139 -12.57491 -12.48946 -12.36552 -12.16069 -11.99055 -11.90551 -11.76393 -11.29379 -10.68028 -10.55955 -10.40097 -10.14294 -9.28332 -8.27493 -6.39546 -0.14865 -0.01416 1.41693 1.45264 1.53128 2.32039 2.51760 2.70655 2.96059 3.01392 3.06804 3.13839 3.32926 3.69639 3.94107 4.12187 4.29235 4.32882 4.34348 4.39291 4.51551 4.56160 4.62416 4.70055 4.74931 4.81202 4.82385 4.96527 4.98087 5.05888 5.06872 5.24215 5.36948 5.56713 5.69614 5.88186 6.11566 6.31963 6.35750 6.71250 7.11471 7.30076 8.84194 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.006300 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.732154 B = 4443.333388 C = 5461.726761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C 0.160 3.840 4 N -0.524 5.524 5 C 0.305 3.695 6 N -0.521 5.521 7 C 0.342 3.658 8 N -0.479 5.479 9 C 0.223 3.777 10 C -0.528 4.528 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.932 5.932 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.061 3.939 19 C 0.077 3.923 20 O -0.396 6.396 21 C 0.029 3.971 22 C -0.042 4.042 23 F -0.129 7.129 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.232 0.768 30 H -0.021 1.021 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 1.343 10.607 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C 0.014 3.986 4 N -0.240 5.240 5 C 0.016 3.984 6 N -0.241 5.241 7 C 0.101 3.899 8 N -0.197 5.197 9 C 0.099 3.901 10 C -0.566 4.566 11 H 0.089 0.911 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.066 4.066 19 C 0.000 4.000 20 O -0.315 6.315 21 C -0.067 4.067 22 C -0.069 4.069 23 F -0.108 7.108 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.248 0.752 30 H -0.003 1.003 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.343 1.513 11.095 15.939 hybrid contribution 0.619 0.048 -1.727 1.835 sum -10.724 1.561 9.368 14.325 Atomic orbital electron populations 1.21635 0.92106 1.03774 1.01710 1.20623 0.98099 0.87567 1.04961 1.22099 0.92215 0.98407 0.85885 1.68341 1.16694 1.11329 1.27653 1.25404 0.89079 0.86723 0.97203 1.68461 1.19045 1.38798 0.97750 1.20531 0.90127 0.88941 0.90295 1.59421 1.37714 1.05885 1.16728 1.19467 0.82188 0.94531 0.93864 1.21269 1.10259 1.29714 0.95388 0.91094 1.25925 0.94649 0.94871 1.03698 1.70078 1.13951 1.34889 1.38184 0.85346 0.77665 0.79072 0.78022 1.18586 1.20817 1.19430 1.22190 0.97159 0.85555 1.01654 1.22496 0.93241 0.97077 0.87148 1.88045 1.31198 1.68189 1.44030 1.22796 0.83633 0.99702 1.00614 1.19159 1.10496 0.93747 0.83536 1.91464 1.92726 1.82202 1.44429 0.93988 0.88959 0.92002 0.89903 0.87347 0.75248 1.00327 0.97484 0.92358 0.91964 0.88736 0.90388 0.93823 0.92589 0.94653 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.07 -1.91 6.11 29.85 0.18 -1.72 16 3 C 0.16 5.37 6.07 42.44 0.26 5.63 16 4 N -0.52 -16.50 10.37 -188.21 -1.95 -18.46 16 5 C 0.30 9.40 12.28 180.90 2.22 11.62 16 6 N -0.52 -19.51 6.79 -197.39 -1.34 -20.85 16 7 C 0.34 14.61 4.95 133.20 0.66 15.27 16 8 N -0.48 -22.08 4.28 -705.34 -3.02 -25.10 16 9 C 0.22 12.13 4.55 85.56 0.39 12.52 16 10 C -0.53 -29.51 8.41 25.60 0.22 -29.29 16 11 H 0.07 3.81 7.58 -2.91 -0.02 3.79 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 14 Si 0.98 43.35 29.54 68.60 2.03 45.37 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 C 0.06 2.41 5.17 86.30 0.45 2.85 16 19 C 0.08 2.48 6.26 71.98 0.45 2.93 16 20 O -0.40 -12.76 7.63 -148.98 -1.14 -13.90 16 21 C 0.03 0.68 11.01 113.37 1.25 1.93 16 22 C -0.04 -1.74 6.87 22.66 0.16 -1.59 16 23 F -0.13 -5.76 15.75 44.97 0.71 -5.06 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 2.17 7.71 -2.39 -0.02 2.15 16 28 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 29 H 0.23 4.97 8.06 -2.91 -0.02 4.95 16 30 H -0.02 -1.23 8.05 -2.39 -0.02 -1.25 16 31 H 0.01 0.42 6.99 -2.39 -0.02 0.41 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.06 2.48 7.02 -2.39 -0.02 2.46 16 34 H 0.09 3.81 6.98 -2.39 -0.02 3.80 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.64 329.98 4.01 -63.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.04 Total: 10.82 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.40 Total: 18.87 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.03 Total: -119.74 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.14 Total: -13.90 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.71 Total: -5.06 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.64 4.01 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218067257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.870 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds