Wall clock time and date at job start Tue Mar 31 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47235 * 2 1 4 4 C 1.46903 * 111.00388 * 167.36358 * 3 2 1 5 5 C 1.50706 * 109.46607 * 293.95658 * 4 3 2 6 6 C 1.38423 * 120.02352 * 269.71994 * 5 4 3 7 7 F 1.35099 * 120.01222 * 0.02562 * 6 5 4 8 8 C 1.38473 * 119.97147 * 179.79551 * 6 5 4 9 9 C 1.38208 * 120.02574 * 0.48297 * 8 6 5 10 10 C 1.38202 * 120.05221 * 359.74678 * 9 8 6 11 11 C 1.38415 * 120.02429 * 89.99771 * 5 4 3 12 12 F 1.35099 * 120.01625 * 359.97438 * 11 5 4 13 13 C 1.46904 * 111.00389 * 291.31766 * 3 2 1 14 14 H 1.08996 * 109.47032 * 49.25638 * 13 3 2 15 15 C 1.53005 * 109.46859 * 289.26494 * 13 3 2 16 16 C 1.52998 * 109.47331 * 169.26068 * 13 3 2 17 17 C 1.50702 * 109.46985 * 297.33597 * 16 13 3 18 18 H 1.07994 * 120.00107 * 4.21871 * 17 16 13 19 19 C 1.37881 * 119.99796 * 184.21595 * 17 16 13 20 20 N 1.31511 * 119.99946 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47011 * 60.00266 * 21 19 17 23 23 H 1.48500 * 109.46854 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47104 * 299.99951 * 21 19 17 25 25 H 1.08997 * 109.47118 * 66.12016 * 1 2 3 26 26 H 1.08993 * 109.47010 * 186.12612 * 1 2 3 27 27 H 1.09003 * 109.46867 * 306.12377 * 1 2 3 28 28 H 1.08993 * 109.47156 * 120.00355 * 2 1 3 29 29 H 1.09006 * 109.46542 * 240.00371 * 2 1 3 30 30 H 1.09001 * 109.46745 * 53.94857 * 4 3 2 31 31 H 1.08999 * 109.47431 * 173.95633 * 4 3 2 32 32 H 1.08001 * 119.98247 * 180.22844 * 8 6 5 33 33 H 1.08005 * 119.97180 * 179.76903 * 9 8 6 34 34 H 1.08001 * 119.98839 * 180.02562 * 10 9 8 35 35 H 1.08994 * 109.47457 * 59.99279 * 15 13 3 36 36 H 1.08996 * 109.46742 * 180.02562 * 15 13 3 37 37 H 1.09006 * 109.46674 * 299.99416 * 15 13 3 38 38 H 1.08997 * 109.46937 * 57.33742 * 16 13 3 39 39 H 1.09000 * 109.46743 * 177.33642 * 16 13 3 40 40 H 0.97003 * 119.99983 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4569 1.4353 0.3000 5 6 3.6911 0.9721 1.7149 6 6 3.6838 1.8872 2.7534 7 9 3.4662 3.1961 2.4992 8 6 3.8949 1.4599 4.0535 9 6 4.1228 0.1217 4.3132 10 6 4.1350 -0.7922 3.2766 11 6 3.9194 -0.3679 1.9762 12 9 3.9318 -1.2614 0.9629 13 6 1.7252 2.0476 -1.2776 14 1 0.6774 1.8920 -1.5345 15 6 2.6124 1.4564 -2.3751 16 6 2.0020 3.5469 -1.1502 17 6 1.0821 4.1414 -0.1151 18 1 0.4190 3.5022 0.4488 19 6 1.0872 5.5013 0.1120 20 7 1.8944 6.2797 -0.5750 21 14 -0.0525 6.2381 1.3956 22 1 0.2540 5.6513 2.7248 23 1 0.1443 7.7092 1.4462 24 1 -1.4620 5.9398 1.0358 25 1 -0.3633 0.4160 -0.9397 26 1 -0.3633 -1.0217 0.1097 27 1 -0.3633 0.6059 0.8301 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.9949 0.7843 -0.3891 31 1 3.8158 2.4584 0.1885 32 1 3.8856 2.1732 4.8644 33 1 4.2910 -0.2102 5.3272 34 1 4.3127 -1.8378 3.4808 35 1 2.4152 0.3883 -2.4657 36 1 2.3942 1.9484 -3.3229 37 1 3.6603 1.6120 -2.1182 38 1 3.0376 3.7007 -0.8473 39 1 1.8288 4.0312 -2.1113 40 1 1.8978 7.2365 -0.4155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276273636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:14 Heat of formation + Delta-G solvation = -63.280055 kcal Electronic energy + Delta-G solvation = -23595.115198 eV Core-core repulsion = 20045.897782 eV Total energy + Delta-G solvation = -3549.217416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96555 -48.43215 -39.02688 -37.76227 -33.14949 -32.10193 -31.35813 -30.15158 -28.61469 -27.26628 -25.15728 -23.38611 -22.65806 -21.91631 -21.35103 -18.49130 -17.87113 -17.03467 -16.27171 -16.19183 -15.89699 -15.31773 -15.01281 -14.89375 -14.68284 -14.14737 -14.12931 -13.84885 -13.42455 -12.76022 -12.59071 -12.51381 -12.20442 -11.92519 -11.75111 -11.67629 -11.62122 -11.22414 -11.13805 -10.89225 -10.82719 -10.59087 -10.45182 -10.32443 -9.76971 -9.16392 -8.93859 -8.73524 -8.57917 -8.17739 -7.47574 -5.81767 -3.78391 1.06564 1.13748 3.45269 3.45460 3.48505 3.52865 4.07603 4.57558 4.59235 4.63586 4.70979 4.83952 4.95413 5.22534 5.44795 5.55459 5.61643 5.74042 5.77223 5.82452 5.92058 5.99533 6.00791 6.07931 6.10384 6.12250 6.20554 6.22615 6.32650 6.43374 6.57944 6.66245 6.70669 6.91874 7.03551 7.55283 7.70387 7.90944 8.03915 8.19184 8.65525 9.27147 9.83056 11.30525 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.007209 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.246698 B = 3882.992252 C = 4871.112654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.502 5.502 4 C 0.092 3.908 5 C -0.139 4.139 6 C 0.159 3.841 7 F -0.106 7.106 8 C -0.173 4.173 9 C -0.069 4.069 10 C -0.175 4.175 11 C 0.126 3.874 12 F -0.133 7.133 13 C 0.084 3.916 14 H 0.076 0.924 15 C -0.185 4.185 16 C 0.031 3.969 17 C -0.484 4.484 18 H 0.060 0.940 19 C 0.053 3.947 20 N -0.905 5.905 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.014 0.986 39 H 0.021 0.979 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -14.612 6.578 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.225 5.225 4 C -0.035 4.035 5 C -0.142 4.142 6 C 0.138 3.862 7 F -0.084 7.084 8 C -0.192 4.192 9 C -0.087 4.087 10 C -0.194 4.194 11 C 0.106 3.894 12 F -0.112 7.112 13 C -0.023 4.023 14 H 0.094 0.906 15 C -0.244 4.244 16 C -0.006 4.006 17 C -0.523 4.523 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.546 5.546 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.585 -14.142 6.860 16.373 hybrid contribution -0.205 0.114 -0.108 0.259 sum 4.379 -14.028 6.751 16.172 Atomic orbital electron populations 1.21742 0.95276 1.00326 1.02774 1.22191 0.96064 0.90502 0.99799 1.62228 1.12474 1.13951 1.33856 1.20917 0.90824 1.02798 0.88963 1.20021 1.04546 0.91645 0.97972 1.17302 0.97229 0.79190 0.92447 1.91692 1.90987 1.31025 1.94704 1.21246 1.05014 0.97376 0.95534 1.20728 0.97315 0.91705 0.98995 1.21056 1.06182 1.01197 0.90951 1.17240 1.01537 0.85873 0.84723 1.91490 1.93778 1.66857 1.59060 1.21997 0.98201 0.97641 0.84479 0.90584 1.22529 1.01083 0.99778 1.01016 1.19195 0.97107 0.86985 0.97326 1.21088 1.20530 0.91455 1.19224 0.92142 1.24960 0.95918 0.97470 0.96268 1.69948 1.38659 1.04315 1.41666 0.86753 0.81361 0.77702 0.82733 1.20334 1.21732 1.20619 0.92651 0.93406 0.91731 0.91918 0.95397 0.94048 0.87782 0.84286 0.84457 0.84618 0.93997 0.92395 0.93014 0.96774 0.96043 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.78 37.16 0.36 -1.89 16 2 C 0.04 0.71 4.88 -3.83 -0.02 0.69 16 3 N -0.50 -9.76 4.03 -228.08 -0.92 -10.68 16 4 C 0.09 1.71 3.72 -4.97 -0.02 1.69 16 5 C -0.14 -2.32 4.93 -104.49 -0.52 -2.84 16 6 C 0.16 2.68 7.24 -39.43 -0.29 2.39 16 7 F -0.11 -2.20 16.47 2.25 0.04 -2.17 16 8 C -0.17 -2.25 10.02 -39.51 -0.40 -2.64 16 9 C -0.07 -0.73 10.04 -39.61 -0.40 -1.13 16 10 C -0.17 -1.99 10.03 -39.50 -0.40 -2.38 16 11 C 0.13 1.80 5.89 -39.43 -0.23 1.57 16 12 F -0.13 -1.93 14.92 2.25 0.03 -1.90 16 13 C 0.08 1.74 2.17 -67.71 -0.15 1.59 16 14 H 0.08 1.59 6.31 -51.93 -0.33 1.27 16 15 C -0.19 -3.26 8.46 37.16 0.31 -2.95 16 16 C 0.03 0.79 4.36 -27.88 -0.12 0.67 16 17 C -0.48 -13.64 8.80 -34.44 -0.30 -13.94 16 18 H 0.06 1.71 7.69 -52.49 -0.40 1.31 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.05 0.88 6.71 -51.93 -0.35 0.53 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.02 4.85 -51.93 -0.25 0.77 16 29 H 0.03 0.45 6.36 -51.93 -0.33 0.12 16 30 H 0.04 0.72 6.32 -51.93 -0.33 0.39 16 31 H 0.10 2.19 5.57 -51.93 -0.29 1.90 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.04 0.67 6.56 -51.93 -0.34 0.32 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.90 6.55 -51.93 -0.34 0.56 16 38 H 0.01 0.38 6.28 -51.93 -0.33 0.06 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -30.77 323.60 -7.89 -38.65 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.38 Total: -1.74 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.25 Total: -17.73 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.18 Total: -37.48 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.77 -7.89 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276273636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.626 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds