Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47166 * 2 1 4 4 C 1.46899 * 111.00296 * 297.33602 * 3 2 1 5 5 C 1.50707 * 109.46925 * 292.72663 * 4 3 2 6 6 H 1.07999 * 120.00360 * 355.02429 * 5 4 3 7 7 C 1.37877 * 119.99569 * 175.02071 * 5 4 3 8 8 N 1.31519 * 120.00430 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99827 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47224 * 89.99942 * 9 7 5 11 11 H 1.48503 * 109.47241 * 210.00015 * 9 7 5 12 12 H 1.48499 * 109.47091 * 330.00078 * 9 7 5 13 13 C 1.46898 * 111.00057 * 61.29164 * 3 2 1 14 14 C 1.53000 * 109.46903 * 66.04300 * 13 3 2 15 15 H 1.08999 * 109.47254 * 304.99972 * 14 13 3 16 16 C 1.53003 * 109.47279 * 65.00409 * 14 13 3 17 17 C 1.50699 * 109.46919 * 185.00018 * 14 13 3 18 18 C 1.38210 * 119.97477 * 120.00341 * 17 14 13 19 19 C 1.38471 * 120.03026 * 179.70503 * 18 17 14 20 20 F 1.35094 * 120.01775 * 180.25110 * 19 18 17 21 21 C 1.38427 * 119.96970 * 0.27071 * 19 18 17 22 22 C 1.38420 * 119.95106 * 0.02562 * 21 19 18 23 23 F 1.35096 * 120.01134 * 179.97438 * 22 21 19 24 24 C 1.38204 * 119.97797 * 300.25298 * 17 14 13 25 25 H 1.08998 * 109.47254 * 179.43982 * 1 2 3 26 26 H 1.09003 * 109.46862 * 299.44160 * 1 2 3 27 27 H 1.09005 * 109.47501 * 59.43892 * 1 2 3 28 28 H 1.09009 * 109.46922 * 240.00063 * 2 1 3 29 29 H 1.09001 * 109.47495 * 120.00374 * 2 1 3 30 30 H 1.08995 * 109.47159 * 52.72361 * 4 3 2 31 31 H 1.08991 * 109.47157 * 172.72972 * 4 3 2 32 32 H 0.96993 * 120.00165 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47085 * 306.04710 * 13 3 2 34 34 H 1.08996 * 109.47257 * 186.04060 * 13 3 2 35 35 H 1.08998 * 109.46776 * 299.99924 * 16 14 13 36 36 H 1.08999 * 109.47335 * 59.99612 * 16 14 13 37 37 H 1.08999 * 109.47191 * 179.97438 * 16 14 13 38 38 H 1.08004 * 119.98895 * 359.97091 * 18 17 14 39 39 H 1.07997 * 120.02062 * 179.97438 * 21 19 18 40 40 H 1.07996 * 119.98773 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6014 2.0913 -1.2182 5 6 2.3000 1.4917 -2.4114 6 1 3.0456 0.7231 -2.2708 7 6 1.9873 1.9244 -3.6826 8 7 1.0797 2.8607 -3.8540 9 14 2.8527 1.1807 -5.1617 10 1 2.0869 0.0028 -5.6427 11 1 2.9377 2.1921 -6.2457 12 1 4.2214 0.7560 -4.7725 13 6 1.5741 2.1009 1.2028 14 6 2.2321 1.4821 2.4377 15 1 2.0207 0.4131 2.4649 16 6 3.7450 1.7014 2.3734 17 6 1.6824 2.1345 3.6799 18 6 1.0299 1.3714 4.6297 19 6 0.5297 1.9688 5.7744 20 9 -0.1036 1.2218 6.7050 21 6 0.6785 3.3318 5.9647 22 6 1.3267 4.0961 5.0099 23 9 1.4722 5.4265 5.1941 24 6 1.8265 3.4964 3.8662 25 1 -0.3634 -1.0276 -0.0100 26 1 -0.3633 0.5052 0.8950 27 1 -0.3634 0.5225 -0.8849 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5229 1.9945 -1.3422 31 1 1.8644 3.1457 -1.1353 32 1 0.8600 3.1653 -4.7482 33 1 0.4904 2.0233 1.2913 34 1 1.8583 3.1504 1.1272 35 1 4.1425 1.2295 1.4749 36 1 3.9563 2.7704 2.3462 37 1 4.2137 1.2609 3.2534 38 1 0.9138 0.3080 4.4811 39 1 0.2883 3.7986 6.8570 40 1 2.3326 4.0925 3.1213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294493490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = -73.200981 kcal Electronic energy + Delta-G solvation = -22202.865244 eV Core-core repulsion = 18653.217624 eV Total energy + Delta-G solvation = -3549.647620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.17016 -49.11949 -39.58855 -37.47940 -34.19754 -32.47806 -30.52787 -29.85447 -29.22653 -27.14264 -25.12009 -23.71304 -23.01703 -22.90381 -20.65301 -18.97803 -17.81385 -17.18149 -16.55361 -16.22855 -16.11540 -15.84048 -15.44646 -15.15731 -15.10419 -14.46789 -14.39525 -13.93966 -13.39408 -13.20733 -12.86154 -12.47258 -12.35225 -12.10063 -11.96938 -11.85106 -11.78122 -11.25738 -11.11745 -11.00437 -10.91385 -10.62076 -10.60896 -10.38664 -10.04575 -9.68472 -9.25489 -8.96906 -8.89726 -8.43977 -7.19983 -6.03275 -4.04361 0.82539 0.84222 3.21195 3.30675 3.37446 3.41266 3.67043 4.20309 4.33855 4.43903 4.64677 4.75319 4.99450 5.08586 5.14260 5.32262 5.41004 5.51141 5.63711 5.74164 5.76921 5.82507 5.86654 5.90267 5.97664 6.09171 6.12413 6.20905 6.22942 6.44473 6.52492 6.61625 6.66703 6.68188 6.89056 7.29425 7.43159 7.80269 8.08816 8.18124 8.54144 9.03911 9.59960 11.07328 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.003681 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.853856 B = 7604.648030 C = 8050.825278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.059 3.941 14 C -0.053 4.053 15 H 0.084 0.916 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.163 4.163 19 C 0.129 3.871 20 F -0.134 7.134 21 C -0.204 4.204 22 C 0.131 3.869 23 F -0.133 7.133 24 C -0.157 4.157 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.003 0.997 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -1.691 18.029 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.254 5.254 4 C 0.064 3.936 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.070 4.070 14 C -0.072 4.072 15 H 0.103 0.897 16 C -0.190 4.190 17 C -0.007 4.007 18 C -0.182 4.182 19 C 0.110 3.890 20 F -0.113 7.113 21 C -0.223 4.223 22 C 0.112 3.888 23 F -0.111 7.111 24 C -0.176 4.176 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.446 -1.561 17.919 17.992 hybrid contribution -0.770 -0.095 -0.615 0.989 sum -0.324 -1.656 17.304 17.386 Atomic orbital electron populations 1.22395 0.99537 1.00960 1.01997 1.22008 0.92025 0.91685 1.01299 1.62322 1.58935 1.01805 1.02350 1.19778 0.94856 0.93682 0.85306 1.21143 1.21668 1.21380 0.90097 0.91906 1.24977 0.95327 0.95254 0.99026 1.69954 1.32311 1.29312 1.22325 0.86540 0.80071 0.78751 0.82305 1.20809 1.21334 1.19781 1.22115 0.96705 0.98177 0.90022 1.20325 0.96713 0.99944 0.90202 0.89744 1.21724 0.93141 1.01953 1.02204 1.19742 0.93381 0.92295 0.95297 1.21154 1.01872 1.01637 0.93531 1.17249 0.95741 0.88403 0.87636 1.91518 1.79551 1.76124 1.64092 1.20941 1.06186 0.93043 1.02165 1.17276 0.98932 0.77609 0.94978 1.91529 1.93733 1.30543 1.95308 1.21166 1.03311 0.95612 0.97489 0.93486 0.93686 0.91320 0.90075 0.92917 0.97937 0.95812 0.92976 0.95125 0.91294 0.90055 0.92821 0.93698 0.84099 0.83786 0.83688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 9.26 37.16 0.34 -2.91 16 2 C 0.06 1.04 5.68 -3.83 -0.02 1.02 16 3 N -0.53 -10.43 4.15 -236.08 -0.98 -11.41 16 4 C 0.19 4.66 4.54 -4.97 -0.02 4.64 16 5 C -0.50 -13.62 8.39 -34.44 -0.29 -13.91 16 6 H 0.06 1.68 7.39 -52.49 -0.39 1.30 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.06 0.96 3.86 -3.82 -0.01 0.94 16 14 C -0.05 -0.69 2.48 -91.77 -0.23 -0.92 16 15 H 0.08 1.06 6.04 -51.93 -0.31 0.75 16 16 C -0.13 -1.69 8.90 37.16 0.33 -1.36 16 17 C -0.01 -0.07 4.78 -104.65 -0.50 -0.57 16 18 C -0.16 -1.80 9.65 -39.51 -0.38 -2.18 16 19 C 0.13 1.43 7.30 -39.43 -0.29 1.14 16 20 F -0.13 -1.52 17.27 2.25 0.04 -1.48 16 21 C -0.20 -2.18 10.01 -39.44 -0.39 -2.57 16 22 C 0.13 1.52 7.30 -39.43 -0.29 1.23 16 23 F -0.13 -1.60 17.27 2.25 0.04 -1.56 16 24 C -0.16 -1.85 8.74 -39.51 -0.35 -2.20 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.71 6.33 -51.93 -0.33 0.39 16 27 H 0.07 1.39 6.29 -51.93 -0.33 1.06 16 28 H 0.08 1.61 6.98 -51.92 -0.36 1.25 16 29 H 0.05 0.80 6.31 -51.93 -0.33 0.47 16 30 H 0.00 0.08 6.02 -51.93 -0.31 -0.24 16 31 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.03 0.52 6.05 -51.93 -0.31 0.20 16 34 H 0.07 1.15 7.33 -51.93 -0.38 0.77 16 35 H 0.08 1.18 7.75 -51.93 -0.40 0.78 16 36 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.14 1.35 7.94 -52.48 -0.42 0.94 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.15 1.66 7.16 -52.49 -0.38 1.28 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -28.13 328.72 -7.87 -36.00 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.45 Total: -1.03 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.20 Total: -16.22 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.24 Total: -36.88 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.13 -7.87 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294493490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.197 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds