Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47483 * 2 1 4 4 C 1.46904 * 110.99767 * 62.61336 * 3 2 1 5 5 C 1.50703 * 109.47071 * 66.04430 * 4 3 2 6 6 H 1.07999 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99899 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00359 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47278 * 60.00340 * 9 7 5 11 11 H 1.48504 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47390 * 300.00346 * 9 7 5 13 13 C 1.46893 * 111.00045 * 298.66037 * 3 2 1 14 14 C 1.52994 * 109.47332 * 288.28828 * 13 3 2 15 15 H 1.09002 * 109.47438 * 56.92458 * 14 13 3 16 16 C 1.53006 * 109.47083 * 296.92655 * 14 13 3 17 17 C 1.50699 * 109.47519 * 176.92847 * 14 13 3 18 18 C 1.38210 * 119.97441 * 59.72163 * 17 14 13 19 19 C 1.38475 * 120.02555 * 179.72985 * 18 17 14 20 20 F 1.35092 * 120.01637 * 180.29931 * 19 18 17 21 21 C 1.38420 * 119.97072 * 0.54727 * 19 18 17 22 22 C 1.38420 * 119.95092 * 359.73072 * 21 19 18 23 23 F 1.35108 * 120.01025 * 180.02562 * 22 21 19 24 24 C 1.38206 * 119.97561 * 240.00187 * 17 14 13 25 25 H 1.08991 * 109.47446 * 61.39935 * 1 2 3 26 26 H 1.08999 * 109.47174 * 181.40349 * 1 2 3 27 27 H 1.09001 * 109.46741 * 301.39914 * 1 2 3 28 28 H 1.09006 * 109.46889 * 239.99973 * 2 1 3 29 29 H 1.09006 * 109.47072 * 120.00626 * 2 1 3 30 30 H 1.08996 * 109.47288 * 186.04836 * 4 3 2 31 31 H 1.09002 * 109.47096 * 306.05036 * 4 3 2 32 32 H 0.97006 * 120.00160 * 179.97438 * 8 7 5 33 33 H 1.09009 * 109.47168 * 48.28974 * 13 3 2 34 34 H 1.08998 * 109.47041 * 168.28502 * 13 3 2 35 35 H 1.08998 * 109.47080 * 299.99730 * 16 14 13 36 36 H 1.09001 * 109.46620 * 60.00045 * 16 14 13 37 37 H 1.08995 * 109.46763 * 179.97438 * 16 14 13 38 38 H 1.08002 * 119.98895 * 359.97438 * 18 17 14 39 39 H 1.07999 * 120.02407 * 179.74704 * 21 19 18 40 40 H 1.08001 * 119.98636 * 359.97252 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6004 2.0915 1.2178 5 6 2.2748 1.4727 2.4150 6 1 2.9479 0.6383 2.2843 7 6 2.0333 1.9725 3.6771 8 7 1.2141 2.9889 3.8362 9 14 2.8698 1.2059 5.1610 10 1 4.3431 1.3126 5.0089 11 1 2.4468 1.9209 6.3920 12 1 2.4850 -0.2248 5.2620 13 6 1.5751 2.1005 -1.2033 14 6 2.3396 1.5759 -2.4204 15 1 2.1897 0.4997 -2.5074 16 6 3.8314 1.8710 -2.2517 17 6 1.8305 2.2562 -3.6650 18 6 1.9097 3.6311 -3.7819 19 6 1.4474 4.2568 -4.9275 20 9 1.5304 5.6001 -5.0441 21 6 0.8955 3.5057 -5.9509 22 6 0.8115 2.1294 -5.8302 23 9 0.2735 1.3951 -6.8286 24 6 1.2796 1.5053 -4.6862 25 1 -0.3634 0.4919 -0.9022 26 1 -0.3633 -1.0273 0.0252 27 1 -0.3633 0.5354 0.8772 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.8830 3.1417 1.1440 31 1 0.5190 2.0132 1.3292 32 1 1.0440 3.3403 4.7243 33 1 0.5068 1.9393 -1.3481 34 1 1.7688 3.1666 -1.0845 35 1 3.9813 2.9472 -2.1648 36 1 4.1995 1.3789 -1.3515 37 1 4.3760 1.4968 -3.1186 38 1 2.3359 4.2173 -2.9812 39 1 0.5309 3.9933 -6.8429 40 1 1.2145 0.4314 -4.5920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294493494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -73.215105 kcal Electronic energy + Delta-G solvation = -22188.127340 eV Core-core repulsion = 18638.479107 eV Total energy + Delta-G solvation = -3549.648232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.16403 -49.11287 -39.56925 -37.46425 -34.21121 -32.48635 -30.52123 -29.86660 -29.18427 -27.14651 -25.11537 -23.70956 -23.01676 -22.89877 -20.63997 -18.98521 -17.80407 -17.17685 -16.54726 -16.22397 -16.10894 -15.83761 -15.44088 -15.14698 -15.11571 -14.46333 -14.36349 -13.91785 -13.41857 -13.22208 -12.85271 -12.46782 -12.34603 -12.09487 -11.95036 -11.85747 -11.76952 -11.25244 -11.10024 -10.98993 -10.90060 -10.64252 -10.57804 -10.42199 -10.01980 -9.70419 -9.25830 -8.96522 -8.89150 -8.43605 -7.20306 -6.03250 -4.04286 0.83125 0.84845 3.21816 3.32487 3.37035 3.39514 3.67619 4.21003 4.34453 4.44068 4.65248 4.76010 4.99880 5.08834 5.15641 5.32557 5.42803 5.53362 5.64270 5.75106 5.76899 5.83043 5.87005 5.90394 5.99531 6.08938 6.12369 6.22109 6.23374 6.45613 6.53557 6.62855 6.67207 6.69714 6.88381 7.30068 7.41544 7.78923 8.08436 8.19160 8.53993 9.02952 9.59807 11.07458 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003698 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.891017 B = 7570.356107 C = 8057.943911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.530 5.530 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.057 3.943 14 C -0.051 4.051 15 H 0.082 0.918 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.157 4.157 19 C 0.131 3.869 20 F -0.133 7.133 21 C -0.204 4.204 22 C 0.129 3.871 23 F -0.135 7.135 24 C -0.163 4.163 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.027 0.973 31 H -0.002 1.002 32 H 0.261 0.739 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -1.562 -17.873 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.072 4.072 14 C -0.070 4.070 15 H 0.101 0.899 16 C -0.190 4.190 17 C -0.007 4.007 18 C -0.176 4.176 19 C 0.112 3.888 20 F -0.111 7.111 21 C -0.223 4.223 22 C 0.109 3.891 23 F -0.113 7.113 24 C -0.182 4.182 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.543 -1.419 -17.759 17.824 hybrid contribution -0.739 -0.103 0.599 0.957 sum -0.196 -1.522 -17.160 17.228 Atomic orbital electron populations 1.22393 0.99550 1.01017 1.01932 1.22003 0.92022 0.91670 1.01282 1.62298 1.58926 1.01792 1.02354 1.19772 0.94512 0.93895 0.85299 1.21104 1.26460 1.16323 0.90514 0.91976 1.24967 0.95421 0.95143 0.99011 1.69944 1.36159 1.24824 1.22951 0.86595 0.79937 0.79212 0.81858 1.20199 1.21431 1.20329 1.22132 0.96225 0.98552 0.90272 1.20288 0.96834 0.99663 0.90192 0.89923 1.21718 0.93195 1.01910 1.02162 1.19752 0.93399 0.92351 0.95217 1.21175 1.03407 0.95297 0.97695 1.17276 0.99491 0.77198 0.94830 1.91528 1.94063 1.29302 1.96216 1.20939 1.07052 0.92919 1.01434 1.17250 0.97217 0.88440 0.86151 1.91522 1.83552 1.76901 1.59330 1.21151 1.02612 1.01510 0.92929 0.93664 0.93462 0.91327 0.93014 0.90065 0.95487 0.98398 0.92912 0.94943 0.91324 0.92853 0.89964 0.93773 0.83671 0.83793 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.28 37.16 0.34 -2.90 16 2 C 0.06 1.05 5.73 -3.83 -0.02 1.03 16 3 N -0.53 -10.40 4.03 -236.07 -0.95 -11.35 16 4 C 0.19 4.68 4.52 -4.97 -0.02 4.66 16 5 C -0.51 -13.63 8.48 -34.44 -0.29 -13.92 16 6 H 0.06 1.65 7.12 -52.49 -0.37 1.28 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.06 0.93 3.99 -3.83 -0.02 0.91 16 14 C -0.05 -0.66 2.55 -91.77 -0.23 -0.90 16 15 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 16 C -0.13 -1.72 8.88 37.16 0.33 -1.39 16 17 C -0.01 -0.08 4.78 -104.64 -0.50 -0.58 16 18 C -0.16 -1.87 8.72 -39.50 -0.34 -2.21 16 19 C 0.13 1.53 7.30 -39.43 -0.29 1.24 16 20 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 21 C -0.20 -2.18 10.01 -39.45 -0.39 -2.58 16 22 C 0.13 1.43 7.30 -39.43 -0.29 1.14 16 23 F -0.13 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.16 -1.80 9.65 -39.51 -0.38 -2.18 16 25 H 0.04 0.71 6.27 -51.93 -0.33 0.39 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.38 6.27 -51.93 -0.33 1.05 16 28 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 29 H 0.08 1.61 6.79 -51.93 -0.35 1.25 16 30 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.00 -0.04 6.06 -51.93 -0.31 -0.36 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.03 0.54 5.84 -51.92 -0.30 0.24 16 34 H 0.07 1.16 7.15 -51.93 -0.37 0.79 16 35 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 36 H 0.08 1.22 7.69 -51.93 -0.40 0.82 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.15 1.69 7.13 -52.49 -0.37 1.32 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 1.35 7.94 -52.49 -0.42 0.93 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -28.03 328.46 -7.84 -35.87 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.42 Total: -0.95 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.20 Total: -16.22 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.21 Total: -36.81 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.03 -7.84 -35.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294493494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.347 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds