Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 H 1.08997 * 109.47003 * 175.03093 * 3 2 1 5 5 C 1.50704 * 109.47283 * 55.02973 * 3 2 1 6 6 H 1.08003 * 119.99667 * 240.00116 * 5 3 2 7 7 C 1.37877 * 119.99903 * 59.99748 * 5 3 2 8 8 N 1.31508 * 120.00047 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99765 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47299 * 120.00053 * 9 7 5 12 12 H 1.48502 * 109.46991 * 239.99580 * 9 7 5 13 13 N 1.46898 * 109.47258 * 295.02599 * 3 2 1 14 14 C 1.46896 * 111.00424 * 271.66438 * 13 3 2 15 15 C 1.52994 * 109.47508 * 184.36033 * 14 13 3 16 16 H 1.09005 * 109.47424 * 54.99952 * 15 14 13 17 17 C 1.52997 * 109.47300 * 295.00074 * 15 14 13 18 18 C 1.50700 * 109.47475 * 174.99849 * 15 14 13 19 19 C 1.38206 * 119.97469 * 59.72514 * 18 15 14 20 20 C 1.38475 * 120.02506 * 179.72935 * 19 18 15 21 21 F 1.35103 * 120.01139 * 180.29889 * 20 19 18 22 22 C 1.38414 * 119.97281 * 0.54475 * 20 19 18 23 23 C 1.38416 * 119.95361 * 359.72811 * 22 20 19 24 24 F 1.35100 * 120.01528 * 180.02562 * 23 22 20 25 25 C 1.38208 * 119.97491 * 239.99952 * 18 15 14 26 26 H 1.08997 * 109.46863 * 184.29955 * 1 2 3 27 27 H 1.09003 * 109.47199 * 64.29733 * 1 2 3 28 28 H 1.08999 * 109.46490 * 304.30012 * 1 2 3 29 29 H 1.08996 * 109.47377 * 119.99727 * 2 1 3 30 30 H 1.09000 * 109.46987 * 240.00651 * 2 1 3 31 31 H 0.97003 * 120.00417 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99819 * 35.62031 * 13 3 2 33 33 H 1.09006 * 109.46730 * 304.35843 * 14 13 3 34 34 H 1.08996 * 109.47238 * 64.35306 * 14 13 3 35 35 H 1.09005 * 109.47251 * 59.99698 * 17 15 14 36 36 H 1.08994 * 109.47720 * 180.02562 * 17 15 14 37 37 H 1.09005 * 109.46783 * 300.00271 * 17 15 14 38 38 H 1.08006 * 119.98489 * 359.97438 * 19 18 15 39 39 H 1.08001 * 120.02414 * 179.74767 * 22 20 19 40 40 H 1.07997 * 119.99161 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0890 5 6 1.4396 2.1876 1.1643 6 1 0.8299 3.0617 0.9894 7 6 1.6688 1.7533 2.4527 8 7 2.4107 0.6886 2.6655 9 14 0.9240 2.6765 3.8958 10 1 0.1363 3.8301 3.3920 11 1 0.0349 1.7655 4.6604 12 1 2.0094 3.1680 4.7822 13 7 1.6508 2.0995 -1.2549 14 6 2.6646 1.8875 -2.2967 15 6 2.2791 2.6739 -3.5511 16 1 2.1347 3.7229 -3.2924 17 6 0.9805 2.1078 -4.1290 18 6 3.3781 2.5560 -4.5755 19 6 3.7451 1.3126 -5.0545 20 6 4.7510 1.2035 -5.9999 21 9 5.1054 -0.0116 -6.4724 22 6 5.3967 2.3394 -6.4568 23 6 5.0322 3.5837 -5.9723 24 9 5.6612 4.6932 -6.4178 25 6 4.0221 3.6908 -5.0310 26 1 -0.3633 -1.0248 0.0770 27 1 -0.3634 0.4457 -0.9260 28 1 -0.3632 0.5791 0.8490 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 2.5717 0.3828 3.5719 32 1 0.7439 1.7822 -1.5630 33 1 3.6339 2.2316 -1.9357 34 1 2.7223 0.8258 -2.5367 35 1 0.1855 2.1931 -3.3881 36 1 0.7061 2.6677 -5.0230 37 1 1.1249 1.0588 -4.3878 38 1 3.2444 0.4260 -4.6941 39 1 6.1841 2.2549 -7.1912 40 1 3.7373 4.6616 -4.6531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294975367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -82.879122 kcal Electronic energy + Delta-G solvation = -22027.976067 eV Core-core repulsion = 18477.908771 eV Total energy + Delta-G solvation = -3550.067296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15426 -49.12761 -39.51601 -36.90709 -34.67777 -32.04505 -30.59283 -30.41572 -29.21137 -26.56808 -25.14862 -23.47435 -23.15555 -22.68825 -20.19960 -19.29981 -17.82516 -17.24945 -16.56468 -16.20968 -16.09609 -15.81859 -15.44407 -14.94325 -14.89847 -14.48061 -14.16506 -13.69821 -13.40349 -13.06745 -12.90434 -12.51937 -12.35524 -12.15126 -12.09696 -11.98056 -11.75500 -11.11817 -10.94397 -10.85365 -10.81643 -10.57168 -10.52522 -9.97203 -9.78048 -9.58930 -9.08187 -8.91593 -8.89774 -8.35221 -7.24592 -5.98047 -3.99556 0.82708 0.84077 3.20972 3.30982 3.39517 3.44089 3.67244 4.20903 4.34734 4.45301 4.65358 4.76466 5.00043 5.12294 5.27375 5.33697 5.34628 5.48849 5.63731 5.78093 5.78214 5.84299 5.92088 6.01863 6.14691 6.21850 6.31286 6.34644 6.41108 6.52092 6.55999 6.63797 6.86831 7.25022 7.26871 7.49447 7.68592 7.88608 8.27381 8.53076 8.60050 9.06470 9.64289 11.08968 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.003609 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.441233 B = 7755.699524 C = 8157.176125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.055 4.055 16 H 0.094 0.906 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.158 4.158 20 C 0.130 3.870 21 F -0.133 7.133 22 C -0.203 4.203 23 C 0.130 3.870 24 F -0.134 7.134 25 C -0.160 4.160 26 H 0.023 0.977 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.327 0.673 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 1.912 -17.055 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.074 4.074 16 H 0.112 0.888 17 C -0.202 4.202 18 C -0.007 4.007 19 C -0.177 4.177 20 C 0.111 3.889 21 F -0.112 7.112 22 C -0.223 4.223 23 C 0.110 3.890 24 F -0.112 7.112 25 C -0.179 4.179 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.394 2.421 -16.741 17.084 hybrid contribution -0.154 -0.645 0.418 0.784 sum 2.240 1.775 -16.323 16.572 Atomic orbital electron populations 1.21594 0.97673 0.98594 1.00820 1.22099 0.95007 1.01084 1.00253 1.19220 0.95901 0.88588 0.85575 0.95076 1.21112 1.30406 1.11456 0.89603 0.91942 1.24918 0.95565 0.95174 0.98768 1.69886 1.39063 1.23986 1.20681 0.86529 0.78949 0.79877 0.82596 1.19742 1.21267 1.21226 1.60820 1.03665 1.63183 1.03865 1.21918 0.97333 0.96047 0.90842 1.20327 0.91757 1.02787 0.92497 0.88772 1.21855 0.96847 1.00572 1.00889 1.19688 0.95246 0.91070 0.94698 1.21133 0.98601 0.99551 0.98423 1.17263 0.96023 0.79892 0.95728 1.91528 1.91015 1.41615 1.87026 1.20941 1.04807 0.90732 1.05772 1.17256 0.93626 0.82061 0.96038 1.91523 1.80899 1.50821 1.87976 1.21188 0.97213 1.00628 0.98836 0.95796 0.95397 0.91244 0.88889 0.97165 0.93188 0.85433 0.91477 0.96157 0.91165 0.92731 0.92776 0.83963 0.83768 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.41 37.16 0.35 -2.31 16 2 C -0.14 -3.29 5.52 -26.73 -0.15 -3.44 16 3 C 0.21 5.11 2.34 -68.86 -0.16 4.95 16 4 H 0.03 0.83 7.68 -51.93 -0.40 0.43 16 5 C -0.49 -12.82 7.27 -34.44 -0.25 -13.07 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.51 5.28 -17.82 -0.09 1.41 16 8 N -0.90 -24.94 11.37 55.43 0.63 -24.31 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -13.42 6.20 -107.96 -0.67 -14.09 16 14 C 0.07 1.13 4.71 -3.83 -0.02 1.11 16 15 C -0.05 -0.70 2.77 -91.78 -0.25 -0.96 16 16 H 0.09 1.22 7.87 -51.93 -0.41 0.81 16 17 C -0.14 -1.65 8.78 37.16 0.33 -1.33 16 18 C -0.01 -0.07 4.78 -104.64 -0.50 -0.57 16 19 C -0.16 -1.85 8.74 -39.51 -0.35 -2.20 16 20 C 0.13 1.51 7.30 -39.43 -0.29 1.22 16 21 F -0.13 -1.60 17.27 2.25 0.04 -1.56 16 22 C -0.20 -2.18 10.01 -39.45 -0.39 -2.57 16 23 C 0.13 1.46 7.30 -39.43 -0.29 1.17 16 24 F -0.13 -1.54 17.27 2.25 0.04 -1.50 16 25 C -0.16 -1.79 9.65 -39.50 -0.38 -2.17 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.50 6.58 -51.93 -0.34 0.16 16 28 H 0.07 1.58 6.89 -51.93 -0.36 1.22 16 29 H 0.09 2.40 6.22 -51.93 -0.32 2.07 16 30 H 0.01 0.21 7.67 -51.93 -0.40 -0.19 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.33 6.03 4.99 -39.29 -0.20 5.83 16 33 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 34 H 0.02 0.33 7.10 -51.93 -0.37 -0.04 16 35 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.59 7.40 -51.93 -0.38 0.21 16 38 H 0.14 1.59 7.16 -52.48 -0.38 1.22 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 1.42 7.94 -52.49 -0.42 1.00 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -27.04 329.53 -8.01 -35.05 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.55 Total: 4.21 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.45 Total: -18.76 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.04 Total: -38.40 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.04 -8.01 -35.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294975367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.829 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds