Wall clock time and date at job start Tue Mar 31 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47118 * 120.00328 * 2 1 3 5 5 N 1.46905 * 109.46690 * 294.99744 * 4 2 1 6 6 C 1.46906 * 110.99748 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46829 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.46824 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47163 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00014 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00188 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99834 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99998 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46744 * 90.00132 * 13 11 9 15 15 H 1.48500 * 109.47139 * 209.99961 * 13 11 9 16 16 H 1.48495 * 109.47267 * 330.00502 * 13 11 9 17 17 C 1.50703 * 109.46947 * 239.99802 * 2 1 3 18 18 C 1.38212 * 119.97120 * 119.99969 * 17 2 1 19 19 C 1.38468 * 120.02474 * 180.02562 * 18 17 2 20 20 F 1.35097 * 120.01314 * 180.02562 * 19 18 17 21 21 C 1.38425 * 119.97537 * 0.02562 * 19 18 17 22 22 C 1.38418 * 119.94906 * 359.97438 * 21 19 18 23 23 F 1.35092 * 120.01489 * 179.97438 * 22 21 19 24 24 C 1.38203 * 119.97626 * 300.02257 * 17 2 1 25 25 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47124 * 299.99921 * 1 2 3 27 27 H 1.08998 * 109.46940 * 59.99685 * 1 2 3 28 28 H 1.09000 * 109.47144 * 54.99814 * 4 2 1 29 29 H 1.08992 * 109.47094 * 175.00209 * 4 2 1 30 30 H 1.00895 * 111.00054 * 303.95740 * 5 4 2 31 31 H 1.08999 * 109.47075 * 300.00052 * 6 5 4 32 32 H 1.09003 * 109.46780 * 60.00371 * 6 5 4 33 33 H 1.08999 * 109.47275 * 299.99857 * 7 6 5 34 34 H 1.08996 * 109.47179 * 59.99873 * 7 6 5 35 35 H 1.09001 * 109.47527 * 299.99631 * 8 7 6 36 36 H 1.08998 * 109.47451 * 60.00335 * 8 7 6 37 37 H 0.97002 * 119.99344 * 179.97438 * 12 11 9 38 38 H 1.08002 * 119.98740 * 0.02562 * 18 17 2 39 39 H 1.07997 * 120.02416 * 179.72700 * 21 19 18 40 40 H 1.07997 * 119.99250 * 359.95436 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6673 7 6 1.7014 0.1902 4.8893 8 6 2.1949 -0.5016 6.1615 9 6 1.7785 0.3039 7.3652 10 1 1.2182 1.2181 7.2357 11 6 2.1127 -0.1263 8.6318 12 7 2.7954 -1.2393 8.7895 13 14 1.5971 0.8726 10.1238 14 1 0.2635 0.4142 10.5894 15 1 2.5915 0.6876 11.2110 16 1 1.5261 2.3097 9.7569 17 6 2.0324 -0.7105 -1.2305 18 6 2.8269 -0.0382 -2.1399 19 6 3.2886 -0.6898 -3.2711 20 9 4.0656 -0.0327 -4.1596 21 6 2.9537 -2.0148 -3.4913 22 6 2.1579 -2.6870 -2.5798 23 9 1.8297 -3.9799 -2.7935 24 6 1.6978 -2.0335 -1.4489 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7199 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 1.9882 0.9872 2.3966 31 1 1.6903 -1.6249 3.7297 32 1 3.2117 -0.7051 3.6406 33 1 2.1355 1.1881 4.8271 34 1 0.6145 0.2678 4.9157 35 1 1.7612 -1.4996 6.2240 36 1 3.2818 -0.5788 6.1349 37 1 3.0308 -1.5416 9.6806 38 1 3.0878 0.9956 -1.9682 39 1 3.3097 -2.5224 -4.3755 40 1 1.0772 -2.5579 -0.7374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295266491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:06 Heat of formation + Delta-G solvation = -94.544913 kcal Electronic energy + Delta-G solvation = -20898.839771 eV Core-core repulsion = 17348.266608 eV Total energy + Delta-G solvation = -3550.573162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.36697 -49.33115 -39.78918 -36.98359 -34.70320 -33.05138 -31.08534 -30.72554 -29.63392 -26.86278 -25.15512 -23.67549 -23.16269 -22.11403 -20.79216 -19.95535 -18.07272 -17.44999 -16.79534 -16.34789 -16.29733 -16.06966 -15.64757 -15.63247 -14.99859 -14.67177 -14.49426 -14.40003 -13.94427 -13.42566 -13.18367 -12.82803 -12.49291 -12.33810 -12.22928 -12.09265 -11.89533 -11.58072 -11.26598 -11.15333 -10.95749 -10.81527 -10.58385 -10.49382 -9.70118 -9.39203 -9.25272 -9.13374 -9.04585 -8.34214 -8.22560 -5.99351 -4.01457 0.58729 0.58887 2.95615 3.32537 3.38597 3.42008 3.43956 3.94267 4.03661 4.39886 4.42089 4.48708 4.60873 4.73361 4.78497 4.98147 5.10530 5.36516 5.41219 5.43261 5.53274 5.55698 5.60855 5.63708 5.76349 5.80387 5.84395 5.91480 6.10688 6.24079 6.30289 6.38810 6.69945 6.73792 7.12892 7.27675 7.56835 7.68767 7.83538 8.01098 8.44180 9.05864 9.62563 11.12132 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031490 B = 0.002347 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.948035 B =11927.665978 C =12167.689646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 H 0.084 0.916 4 C 0.065 3.935 5 N -0.689 5.689 6 C 0.059 3.941 7 C -0.106 4.106 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.012 4.012 18 C -0.162 4.162 19 C 0.132 3.868 20 F -0.132 7.132 21 C -0.200 4.200 22 C 0.133 3.867 23 F -0.131 7.131 24 C -0.158 4.158 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.337 0.663 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 0.217 -26.020 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 H 0.103 0.897 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.013 4.013 18 C -0.181 4.181 19 C 0.112 3.888 20 F -0.111 7.111 21 C -0.220 4.220 22 C 0.114 3.886 23 F -0.109 7.109 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.514 -0.210 -25.887 25.933 hybrid contribution 0.936 0.433 0.551 1.170 sum -0.578 0.223 -25.336 25.344 Atomic orbital electron populations 1.21768 0.92694 1.02432 1.02485 1.20253 0.97525 0.99058 0.90268 0.89731 1.21998 0.97555 0.97928 0.89030 1.60541 1.64285 1.05639 1.01441 1.22133 0.96891 0.98759 0.89145 1.21616 1.00739 0.98098 0.93984 1.19067 0.96255 0.95819 0.90471 1.21258 1.34894 1.08411 0.91152 0.92666 1.25039 0.95239 0.95150 0.99138 1.69970 1.39193 1.21970 1.22496 0.86592 0.78315 0.80546 0.82542 1.20645 1.21262 1.19885 1.19597 0.93698 0.92704 0.95330 1.21154 1.01101 1.01787 0.94033 1.17250 0.92980 0.90004 0.88553 1.91536 1.72127 1.80623 1.66778 1.21003 1.03882 0.94526 1.02601 1.17267 0.97241 0.79048 0.95073 1.91542 1.90736 1.33943 1.94721 1.21129 1.03472 0.95386 0.97666 0.92574 0.90234 0.93140 0.90759 0.95239 0.84526 0.91451 0.95730 0.93658 0.92523 0.96590 0.96833 0.93032 0.83945 0.83581 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.89 37.16 0.33 -0.85 16 2 C -0.05 -0.45 2.70 -91.77 -0.25 -0.70 16 3 H 0.08 0.66 7.87 -51.93 -0.41 0.26 16 4 C 0.06 0.70 4.81 -3.82 -0.02 0.68 16 5 N -0.69 -9.05 5.95 -113.77 -0.68 -9.73 16 6 C 0.06 0.98 5.69 -3.82 -0.02 0.96 16 7 C -0.11 -2.15 5.41 -26.73 -0.14 -2.30 16 8 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 9 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 13 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.01 -0.11 4.78 -104.64 -0.50 -0.61 16 18 C -0.16 -1.33 9.65 -39.51 -0.38 -1.71 16 19 C 0.13 1.16 7.30 -39.43 -0.29 0.87 16 20 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16 21 C -0.20 -1.70 10.01 -39.45 -0.39 -2.10 16 22 C 0.13 1.21 7.30 -39.43 -0.29 0.93 16 23 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 24 C -0.16 -1.38 8.74 -39.50 -0.35 -1.72 16 25 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 26 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.82 7.57 -51.93 -0.39 0.43 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.34 4.10 8.73 -39.29 -0.34 3.76 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.14 0.95 7.94 -52.49 -0.42 0.54 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.16 7.16 -52.49 -0.38 0.78 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -29.94 343.12 -8.63 -38.58 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.07 Total: -2.17 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.85 Total: -19.71 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.06 Total: -36.10 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.94 -8.63 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295266491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.968 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds