Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.52999 * 109.47397 * 120.00115 * 2 1 3 5 5 C 1.50705 * 109.46880 * 186.11825 * 4 2 1 6 6 H 1.07992 * 120.00237 * 5.01780 * 5 4 2 7 7 C 1.37879 * 119.99229 * 185.02093 * 5 4 2 8 8 N 1.31510 * 120.00667 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99479 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46949 * 90.00264 * 9 7 5 11 11 H 1.48501 * 109.46985 * 209.99802 * 9 7 5 12 12 H 1.48496 * 109.46979 * 329.99918 * 9 7 5 13 13 N 1.46901 * 109.47219 * 240.00559 * 2 1 3 14 14 C 1.46906 * 110.99549 * 306.38382 * 13 2 1 15 15 C 1.50696 * 109.47030 * 200.00161 * 14 13 2 16 16 C 1.38235 * 120.00115 * 263.80512 * 15 14 13 17 17 C 1.38241 * 119.99625 * 179.76335 * 16 15 14 18 18 C 1.38236 * 120.00241 * 0.51557 * 17 16 15 19 19 C 1.38238 * 119.99851 * 359.73350 * 18 17 16 20 20 C 1.38235 * 119.99645 * 84.07794 * 15 14 13 21 21 C 1.46901 * 111.00199 * 70.34024 * 13 2 1 22 22 C 1.52998 * 109.47321 * 77.61769 * 21 13 2 23 23 F 1.39895 * 109.46835 * 294.94039 * 22 21 13 24 24 F 1.39898 * 109.46937 * 54.93716 * 22 21 13 25 25 H 1.09002 * 109.46941 * 299.99609 * 1 2 3 26 26 H 1.08997 * 109.47407 * 59.99925 * 1 2 3 27 27 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46626 * 306.11464 * 4 2 1 29 29 H 1.08995 * 109.46680 * 66.11523 * 4 2 1 30 30 H 0.96998 * 120.00558 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46926 * 320.00635 * 14 13 2 32 32 H 1.08995 * 109.46913 * 80.00713 * 14 13 2 33 33 H 1.07997 * 120.00312 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.99633 * 180.22597 * 17 16 15 35 35 H 1.07993 * 120.00130 * 179.72427 * 18 17 16 36 36 H 1.07996 * 120.00070 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00524 * 0.02562 * 20 15 14 38 38 H 1.08998 * 109.46671 * 317.61534 * 21 13 2 39 39 H 1.09001 * 109.46999 * 197.61997 * 21 13 2 40 40 H 1.08995 * 109.46990 * 174.93582 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5395 -0.5914 1.3271 6 1 4.0668 0.0183 0.6085 7 6 4.2379 -1.2512 2.3160 8 7 3.5958 -1.9933 3.1914 9 14 6.0967 -1.0908 2.4123 10 1 6.4497 0.0631 3.2778 11 1 6.6717 -2.3340 2.9859 12 1 6.6460 -0.8740 1.0498 13 7 2.0197 -0.6924 -1.1995 14 6 1.4281 -2.0323 -1.3122 15 6 2.2777 -2.8816 -2.2220 16 6 1.9459 -3.0089 -3.5579 17 6 2.7281 -3.7841 -4.3935 18 6 3.8360 -4.4405 -3.8910 19 6 4.1649 -4.3173 -2.5539 20 6 3.3857 -3.5379 -1.7194 21 6 1.7602 0.1011 -2.4082 22 6 2.7895 1.2285 -2.5090 23 9 2.6157 2.1154 -1.4411 24 9 4.0791 0.6882 -2.4613 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.5901 -0.2745 2.1358 29 1 1.7689 -1.7756 1.1961 30 1 4.0872 -2.4571 3.8873 31 1 1.3803 -2.4925 -0.3253 32 1 0.4224 -1.9519 -1.7247 33 1 1.0775 -2.5000 -3.9495 34 1 2.4710 -3.8806 -5.4380 35 1 4.4446 -5.0496 -4.5428 36 1 5.0302 -4.8305 -2.1612 37 1 3.6422 -3.4424 -0.6747 38 1 0.7584 0.5274 -2.3548 39 1 1.8360 -0.5397 -3.2867 40 1 2.6536 1.7616 -3.4499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299239552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -75.636056 kcal Electronic energy + Delta-G solvation = -23541.236656 eV Core-core repulsion = 19991.483443 eV Total energy + Delta-G solvation = -3549.753213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.39170 -46.38496 -39.21395 -37.51578 -33.10897 -31.77609 -31.00024 -30.49443 -28.06769 -27.28410 -24.94965 -23.31314 -22.27604 -21.70342 -20.98571 -18.82338 -17.22086 -16.86066 -16.39026 -16.08876 -15.82297 -15.31465 -14.75944 -14.65998 -14.24595 -14.00143 -13.46691 -13.12909 -13.03814 -12.89415 -12.71344 -12.35157 -12.27250 -12.02984 -11.91370 -11.84073 -11.59581 -11.11514 -10.98557 -10.78060 -10.56948 -10.48365 -10.42872 -10.36613 -9.82301 -9.14331 -8.91589 -8.56374 -8.36886 -8.18924 -7.61175 -5.84199 -3.80702 1.67824 1.77590 3.43197 3.49276 3.57421 3.99655 4.24897 4.51685 4.62211 4.64313 4.87776 5.12914 5.15274 5.27914 5.36767 5.42439 5.53685 5.65016 5.69274 5.73435 5.81487 5.83794 5.93904 6.00979 6.08935 6.14882 6.38523 6.42663 6.54074 6.63987 6.74692 6.90076 7.01430 7.09530 7.37452 7.49078 7.55658 7.85476 7.98301 8.16635 8.62429 9.25407 9.80813 11.27564 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.008032 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.924737 B = 3485.170246 C = 4418.523979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.093 0.907 4 C 0.032 3.968 5 C -0.483 4.483 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.905 5.905 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.495 5.495 14 C 0.092 3.908 15 C -0.065 4.065 16 C -0.124 4.124 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.008 4.008 22 C 0.273 3.727 23 F -0.202 7.202 24 F -0.192 7.192 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.022 0.978 30 H 0.256 0.744 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 0.119 -15.008 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.040 4.040 3 H 0.111 0.889 4 C -0.005 4.005 5 C -0.522 4.522 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.546 5.546 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.218 5.218 14 C -0.035 4.035 15 C -0.065 4.065 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.137 4.137 22 C 0.219 3.781 23 F -0.184 7.184 24 F -0.174 7.174 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.732 -0.029 -14.771 15.510 hybrid contribution 0.309 0.145 0.082 0.351 sum -4.423 0.115 -14.689 15.341 Atomic orbital electron populations 1.22524 0.99720 1.01197 1.00769 1.22381 0.90132 1.00095 0.91412 0.88922 1.19203 0.96480 0.95280 0.89549 1.21150 0.91798 1.27640 1.11562 0.92175 1.24946 0.97774 0.95857 0.96103 1.69955 1.35157 1.32336 1.17192 0.86712 0.86760 0.77090 0.78233 1.21078 1.21636 1.19733 1.62058 1.58472 1.00848 1.00432 1.21096 0.93001 0.89358 1.00032 1.19882 0.96308 0.96667 0.93660 1.20979 0.99894 0.99961 0.93464 1.20957 0.96091 0.98692 0.99060 1.21036 0.97616 1.00466 0.95599 1.21185 0.99732 0.99405 0.93798 1.21288 0.93348 0.94270 1.01060 1.23289 0.96786 0.96277 0.97379 1.21839 0.81085 0.87244 0.87972 1.92906 1.95298 1.70133 1.60043 1.93016 1.40334 1.86984 1.97018 0.92291 0.94246 0.93004 0.96602 0.95972 0.93434 0.88217 0.94820 0.87022 0.86887 0.86869 0.86457 0.84788 0.92229 0.88803 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.54 37.16 0.32 -2.71 16 2 C 0.07 1.34 2.14 -67.71 -0.15 1.19 16 3 H 0.09 1.98 5.35 -51.93 -0.28 1.70 16 4 C 0.03 0.80 4.41 -27.88 -0.12 0.67 16 5 C -0.48 -13.55 8.86 -34.44 -0.31 -13.85 16 6 H 0.06 1.75 7.75 -52.49 -0.41 1.34 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.91 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.88 22.49 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.50 -9.08 3.87 -228.08 -0.88 -9.97 16 14 C 0.09 1.57 3.68 -4.97 -0.02 1.55 16 15 C -0.06 -1.06 5.07 -104.63 -0.53 -1.59 16 16 C -0.12 -1.72 8.38 -39.58 -0.33 -2.05 16 17 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 18 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 19 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 20 C -0.08 -1.45 9.73 -39.58 -0.38 -1.83 16 21 C -0.01 -0.11 5.07 -3.82 -0.02 -0.13 16 22 C 0.27 4.09 5.59 37.16 0.21 4.30 16 23 F -0.20 -3.55 14.66 2.25 0.03 -3.52 16 24 F -0.19 -3.64 17.17 2.25 0.04 -3.60 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 27 H 0.05 0.83 6.76 -51.93 -0.35 0.48 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.58 6.07 -51.93 -0.32 0.27 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.10 1.94 5.77 -51.93 -0.30 1.64 16 32 H 0.03 0.50 7.24 -51.93 -0.38 0.12 16 33 H 0.11 1.29 7.78 -52.49 -0.41 0.88 16 34 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.72 8.06 -52.49 -0.42 2.30 16 38 H 0.06 0.76 6.17 -51.93 -0.32 0.44 16 39 H 0.09 1.22 5.95 -51.93 -0.31 0.91 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.35 327.16 -8.28 -39.64 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.49 Total: 0.94 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.62 Total: -19.56 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.15 Total: -36.30 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.35 -8.28 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299239552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.001 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds