Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.20765 * 2 1 4 4 C 1.54389 * 110.23686 * 121.90769 * 2 1 3 5 5 C 1.54536 * 101.77236 * 144.73624 * 4 2 1 6 6 H 1.08995 * 110.58395 * 216.09349 * 5 4 2 7 7 N 1.46498 * 110.47622 * 93.53056 * 5 4 2 8 8 C 1.39685 * 119.99751 * 158.71631 * 7 5 4 9 9 C 1.39340 * 119.95104 * 359.73125 * 8 7 5 10 10 C 1.38479 * 120.41921 * 179.75990 * 9 8 7 11 11 C 1.37688 * 120.32978 * 0.51211 * 10 9 8 12 12 C 1.40750 * 119.89247 * 359.74383 * 11 10 9 13 13 C 1.41403 * 120.20992 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99542 * 24.45296 * 13 12 11 15 15 C 1.39932 * 119.99983 * 204.46354 * 13 12 11 16 16 N 1.30820 * 120.00124 * 17.86700 * 15 13 12 17 17 Si 1.86807 * 119.99736 * 197.87332 * 15 13 12 18 18 H 1.48501 * 109.47214 * 59.99321 * 17 15 13 19 19 H 1.48498 * 109.47186 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46716 * 299.99554 * 17 15 13 21 21 C 1.38283 * 119.95388 * 179.97438 * 8 7 5 22 22 C 1.51565 * 104.24485 * 334.84055 * 5 4 2 23 23 N 1.30913 * 141.44336 * 196.55036 * 22 5 4 24 24 C 1.34008 * 109.29747 * 179.78560 * 23 22 5 25 25 C 1.34561 * 108.03719 * 0.09531 * 24 23 22 26 26 N 1.34811 * 109.94879 * 16.52966 * 22 5 4 27 27 H 1.09006 * 109.46702 * 298.09741 * 1 2 3 28 28 H 1.09002 * 109.47294 * 58.09271 * 1 2 3 29 29 H 1.08991 * 109.47577 * 178.09717 * 1 2 3 30 30 H 1.08992 * 110.96797 * 26.61244 * 4 2 1 31 31 H 1.09003 * 110.96366 * 262.85346 * 4 2 1 32 32 H 0.96997 * 120.00213 * 338.72560 * 7 5 4 33 33 H 1.07997 * 119.78385 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.83375 * 180.25107 * 10 9 8 35 35 H 1.07999 * 120.05357 * 179.76543 * 11 10 9 36 36 H 0.97003 * 119.99756 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.15513 * 0.02562 * 21 8 7 38 38 H 1.08001 * 125.98158 * 180.02562 * 24 23 22 39 39 H 1.07996 * 126.58426 * 179.77653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0640 -0.7657 1.2297 5 6 3.3321 -1.4376 0.6565 6 1 3.4712 -2.4273 1.0914 7 7 4.5100 -0.6016 0.9006 8 6 5.7857 -1.1704 0.8839 9 6 5.9363 -2.5341 0.6405 10 6 7.1967 -3.1071 0.6168 11 6 8.3151 -2.3368 0.8441 12 6 8.1783 -0.9590 1.0967 13 6 9.3223 -0.1617 1.3316 14 1 10.2834 -0.4700 0.9475 15 6 9.2090 1.0266 2.0619 16 7 8.1599 1.2338 2.8153 17 14 10.5559 2.3170 1.9606 18 1 10.7006 2.7723 0.5546 19 1 10.1989 3.4737 2.8208 20 1 11.8387 1.7310 2.4257 21 6 6.8971 -0.3803 1.1139 22 6 3.0574 -1.5455 -0.8302 23 7 3.4740 -2.1643 -1.9060 24 6 2.7390 -1.7716 -2.9554 25 6 1.8347 -0.8758 -2.5189 26 7 2.0384 -0.7308 -1.1699 27 1 -0.3633 0.4840 0.9066 28 1 -0.3634 0.5432 -0.8724 29 1 -0.3634 -1.0270 -0.0341 30 1 1.3452 -1.5125 1.5666 31 1 2.3177 -0.0785 2.0370 32 1 4.4041 0.3469 1.0740 33 1 5.0646 -3.1472 0.4658 34 1 7.3027 -4.1644 0.4232 35 1 9.2957 -2.7891 0.8284 36 1 8.0816 2.0574 3.3219 37 1 6.7812 0.6761 1.3070 38 1 2.8533 -2.1133 -3.9736 39 1 1.0940 -0.3655 -3.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = 98.961545 kcal Electronic energy + Delta-G solvation = -21681.090856 eV Core-core repulsion = 18589.597949 eV Total energy + Delta-G solvation = -3091.492906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30240 -37.98848 -36.84303 -34.52778 -33.17296 -30.84231 -30.34500 -29.35817 -28.20364 -26.79259 -25.19315 -24.20915 -22.04917 -21.01311 -20.42054 -20.04790 -19.44430 -17.45416 -16.73455 -16.04657 -15.35681 -14.92126 -14.73614 -14.35495 -14.19813 -14.08406 -13.84216 -13.19446 -13.03264 -12.74009 -12.63285 -12.37421 -12.18678 -12.06191 -11.64053 -11.53841 -11.14577 -11.06206 -10.99546 -10.48668 -10.38014 -9.59484 -9.56701 -9.39925 -9.37871 -9.25042 -8.80123 -8.18555 -7.21140 -6.68124 -6.19004 -4.23537 2.21424 2.78922 2.94274 3.11495 3.16020 3.28154 3.37622 3.42029 3.92669 4.02315 4.24310 4.36465 4.48718 4.67575 4.78613 4.84700 5.08265 5.21351 5.22966 5.47026 5.56340 5.67291 5.71794 5.77602 5.87759 5.94131 6.38085 6.50460 6.74882 6.93395 7.05421 7.14106 7.20526 7.24093 7.41348 7.47468 7.83596 8.02934 8.18154 8.23432 8.43758 8.53794 8.66105 8.87626 9.07825 9.17971 10.31726 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.004483 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.167351 B = 6243.871844 C = 6764.821025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.094 0.906 4 C -0.133 4.133 5 C 0.238 3.762 6 H 0.104 0.896 7 N -0.743 5.743 8 C 0.210 3.790 9 C -0.276 4.276 10 C -0.067 4.067 11 C -0.254 4.254 12 C 0.137 3.863 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.079 3.921 16 N -0.797 5.797 17 Si 0.903 3.097 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.224 4.224 22 C 0.187 3.813 23 N -0.465 5.465 24 C -0.026 4.026 25 C -0.048 4.048 26 N -0.478 5.478 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.390 0.610 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.276 0.724 37 H 0.116 0.884 38 H 0.169 0.831 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.862 1.053 -2.807 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.112 0.888 4 C -0.172 4.172 5 C 0.127 3.873 6 H 0.122 0.878 7 N -0.376 5.376 8 C 0.113 3.887 9 C -0.298 4.298 10 C -0.086 4.086 11 C -0.274 4.274 12 C 0.134 3.866 13 C -0.497 4.497 14 H 0.093 0.907 15 C -0.138 4.138 16 N -0.423 5.423 17 Si 0.728 3.272 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.247 4.247 22 C -0.078 4.078 23 N -0.183 5.183 24 C -0.175 4.175 25 C -0.180 4.180 26 N -0.162 5.162 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.186 0.814 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.572 0.660 -2.691 15.817 hybrid contribution -0.165 1.700 -0.257 1.727 sum -15.737 2.360 -2.947 16.184 Atomic orbital electron populations 1.22077 0.93070 1.03254 1.03150 1.22024 0.95576 0.96466 0.83220 0.88811 1.23105 0.96781 1.00737 0.96582 1.19498 0.86063 0.97281 0.84418 0.87786 1.44338 1.02327 1.09387 1.81573 1.17589 0.83266 0.92273 0.95601 1.19916 0.96280 0.93181 1.20450 1.20290 0.92775 0.97010 0.98517 1.20876 0.96229 0.94318 1.15989 1.17283 0.92289 0.90462 0.86604 1.19506 0.95586 1.04189 1.30374 0.90687 1.25836 0.96348 0.98513 0.93069 1.69855 1.28181 1.24748 1.19497 0.86470 0.81717 0.79886 0.79177 1.18999 1.20549 1.19087 1.20700 0.90685 0.99031 1.14334 1.25287 0.90290 0.94004 0.98214 1.69971 1.25949 1.25480 0.96884 1.22336 0.96123 1.00375 0.98638 1.22217 1.06434 1.06880 0.82448 1.46614 1.28847 1.33877 1.06910 0.90268 0.91967 0.91510 0.88426 0.87426 0.77568 0.89210 0.89572 0.89435 0.91309 0.86641 0.81358 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.45 37.16 0.35 -0.80 16 2 C 0.13 1.31 4.13 -66.92 -0.28 1.04 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.36 6.27 -25.20 -0.16 -1.52 16 5 C 0.24 3.68 2.88 -67.85 -0.20 3.49 16 6 H 0.10 1.69 6.58 -51.93 -0.34 1.35 16 7 N -0.74 -13.85 5.30 -52.14 -0.28 -14.12 16 8 C 0.21 4.95 6.64 -83.85 -0.56 4.39 16 9 C -0.28 -6.53 9.23 -39.08 -0.36 -6.89 16 10 C -0.07 -1.62 10.01 -39.69 -0.40 -2.02 16 11 C -0.25 -6.62 9.79 -38.83 -0.38 -7.00 16 12 C 0.14 3.80 5.57 -106.85 -0.60 3.20 16 13 C -0.47 -12.86 9.05 -37.74 -0.34 -13.20 16 14 H 0.07 2.00 7.91 -52.49 -0.42 1.59 16 15 C 0.08 2.04 5.14 -17.35 -0.09 1.95 16 16 N -0.80 -20.84 10.96 55.55 0.61 -20.23 16 17 Si 0.90 19.20 29.60 -169.99 -5.03 14.17 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 C -0.22 -5.93 8.53 -38.67 -0.33 -6.26 16 22 C 0.19 3.22 8.22 -154.86 -1.27 1.95 16 23 N -0.46 -8.99 11.26 -10.56 -0.12 -9.11 16 24 C -0.03 -0.40 11.86 -17.90 -0.21 -0.61 16 25 C -0.05 -0.64 12.00 -16.45 -0.20 -0.84 16 26 N -0.48 -6.62 3.27 -105.26 -0.34 -6.96 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.80 7.91 -51.93 -0.41 0.39 16 31 H 0.11 0.95 8.04 -51.93 -0.42 0.53 16 32 H 0.39 6.74 8.58 -40.82 -0.35 6.39 16 33 H 0.09 2.00 6.25 -52.49 -0.33 1.67 16 34 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 38 H 0.17 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -32.26 324.99 -10.38 -42.64 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.10 Total: 11.84 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -5.01 Total: -23.13 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.13 Total: -50.42 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.26 -10.38 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.604 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds