Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.20765 * 2 1 4 4 C 1.54389 * 110.23686 * 121.90769 * 2 1 3 5 5 C 1.54536 * 101.77236 * 144.73624 * 4 2 1 6 6 H 1.08995 * 110.58395 * 216.09349 * 5 4 2 7 7 N 1.46498 * 110.47622 * 93.53056 * 5 4 2 8 8 C 1.39685 * 119.99751 * 158.71631 * 7 5 4 9 9 C 1.39340 * 119.95104 * 359.73125 * 8 7 5 10 10 C 1.38479 * 120.41921 * 179.75990 * 9 8 7 11 11 C 1.37688 * 120.32978 * 0.51211 * 10 9 8 12 12 C 1.40750 * 119.89247 * 359.74383 * 11 10 9 13 13 C 1.41403 * 120.20992 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99542 * 24.45296 * 13 12 11 15 15 C 1.39932 * 119.99983 * 204.46354 * 13 12 11 16 16 N 1.30820 * 120.00124 * 17.86700 * 15 13 12 17 17 Si 1.86807 * 119.99736 * 197.87332 * 15 13 12 18 18 H 1.48501 * 109.47214 * 59.99321 * 17 15 13 19 19 H 1.48498 * 109.47186 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46716 * 299.99554 * 17 15 13 21 21 C 1.38283 * 119.95388 * 179.97438 * 8 7 5 22 22 C 1.51565 * 104.24485 * 334.84055 * 5 4 2 23 23 N 1.30913 * 141.44336 * 196.55036 * 22 5 4 24 24 C 1.34008 * 109.29747 * 179.78560 * 23 22 5 25 25 C 1.34561 * 108.03719 * 0.09531 * 24 23 22 26 26 N 1.34811 * 109.94879 * 16.52966 * 22 5 4 27 27 H 1.09006 * 109.46702 * 298.09741 * 1 2 3 28 28 H 1.09002 * 109.47294 * 58.09271 * 1 2 3 29 29 H 1.08991 * 109.47577 * 178.09717 * 1 2 3 30 30 H 1.08992 * 110.96797 * 26.61244 * 4 2 1 31 31 H 1.09003 * 110.96366 * 262.85346 * 4 2 1 32 32 H 0.96997 * 120.00213 * 338.72560 * 7 5 4 33 33 H 1.07997 * 119.78385 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.83375 * 180.25107 * 10 9 8 35 35 H 1.07999 * 120.05357 * 179.76543 * 11 10 9 36 36 H 0.97003 * 119.99756 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.15513 * 0.02562 * 21 8 7 38 38 H 1.08001 * 125.98158 * 180.02562 * 24 23 22 39 39 H 1.07996 * 126.58426 * 179.77653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0640 -0.7657 1.2297 5 6 3.3321 -1.4376 0.6565 6 1 3.4712 -2.4273 1.0914 7 7 4.5100 -0.6016 0.9006 8 6 5.7857 -1.1704 0.8839 9 6 5.9363 -2.5341 0.6405 10 6 7.1967 -3.1071 0.6168 11 6 8.3151 -2.3368 0.8441 12 6 8.1783 -0.9590 1.0967 13 6 9.3223 -0.1617 1.3316 14 1 10.2834 -0.4700 0.9475 15 6 9.2090 1.0266 2.0619 16 7 8.1599 1.2338 2.8153 17 14 10.5559 2.3170 1.9606 18 1 10.7006 2.7723 0.5546 19 1 10.1989 3.4737 2.8208 20 1 11.8387 1.7310 2.4257 21 6 6.8971 -0.3803 1.1139 22 6 3.0574 -1.5455 -0.8302 23 7 3.4740 -2.1643 -1.9060 24 6 2.7390 -1.7716 -2.9554 25 6 1.8347 -0.8758 -2.5189 26 7 2.0384 -0.7308 -1.1699 27 1 -0.3633 0.4840 0.9066 28 1 -0.3634 0.5432 -0.8724 29 1 -0.3634 -1.0270 -0.0341 30 1 1.3452 -1.5125 1.5666 31 1 2.3177 -0.0785 2.0370 32 1 4.4041 0.3469 1.0740 33 1 5.0646 -3.1472 0.4658 34 1 7.3027 -4.1644 0.4232 35 1 9.2957 -2.7891 0.8284 36 1 8.0816 2.0574 3.3219 37 1 6.7812 0.6761 1.3070 38 1 2.8533 -2.1133 -3.9736 39 1 1.0940 -0.3655 -3.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = 80.308807 kcal Electronic energy + Delta-G solvation = -21681.899699 eV Core-core repulsion = 18589.597949 eV Total energy + Delta-G solvation = -3092.301750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40782 -39.68547 -38.12219 -36.08384 -34.96559 -32.19075 -31.33556 -31.28341 -29.52204 -28.15259 -27.13575 -25.30222 -23.19509 -22.72799 -22.04893 -21.25133 -20.74653 -19.19244 -17.94017 -17.73216 -16.65589 -16.53659 -16.29393 -15.83505 -15.51654 -15.20297 -14.88146 -14.61404 -14.50822 -14.12239 -13.99301 -13.70664 -13.40218 -13.19492 -13.01339 -12.87282 -12.75541 -12.50586 -12.43692 -12.13969 -11.91508 -11.52996 -11.30169 -11.11897 -10.79559 -10.61658 -10.50580 -9.33337 -9.22444 -8.61135 -7.98986 -6.29565 1.07760 1.12180 1.33361 1.38746 1.49441 1.60533 1.84797 2.13686 2.24147 2.81469 2.86178 2.98372 3.45146 3.55947 3.83724 3.90354 4.06742 4.16149 4.37307 4.52423 4.57011 4.63381 4.71418 4.73804 4.84823 4.87527 4.92358 5.00335 5.15540 5.21571 5.30396 5.42111 5.44052 5.58729 5.93211 5.95784 6.10919 6.18181 6.21656 6.24793 6.57131 6.92027 6.99502 7.06182 7.22915 7.28103 8.40164 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.004483 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.167351 B = 6243.871844 C = 6764.821025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 H 0.100 0.900 4 C -0.119 4.119 5 C 0.230 3.770 6 H 0.092 0.908 7 N -0.734 5.734 8 C 0.220 3.780 9 C -0.282 4.282 10 C -0.067 4.067 11 C -0.283 4.283 12 C 0.107 3.893 13 C -0.507 4.507 14 H 0.069 0.931 15 C 0.040 3.960 16 N -0.820 5.820 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.252 4.252 22 C 0.155 3.845 23 N -0.519 5.519 24 C -0.058 4.058 25 C -0.028 4.028 26 N -0.471 5.471 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.286 0.714 37 H 0.103 0.897 38 H 0.185 0.815 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 2.557 -2.613 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.118 0.882 4 C -0.157 4.157 5 C 0.121 3.879 6 H 0.110 0.890 7 N -0.367 5.367 8 C 0.121 3.879 9 C -0.304 4.304 10 C -0.086 4.086 11 C -0.303 4.303 12 C 0.105 3.895 13 C -0.537 4.537 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.446 5.446 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.188 1.188 20 H -0.185 1.185 21 C -0.275 4.275 22 C -0.110 4.110 23 N -0.238 5.238 24 C -0.206 4.206 25 C -0.161 4.161 26 N -0.155 5.155 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.232 0.768 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.966 2.168 -2.479 18.266 hybrid contribution 0.424 1.173 -0.367 1.301 sum -17.542 3.341 -2.846 18.083 Atomic orbital electron populations 1.22049 0.90269 1.03524 1.04790 1.22357 0.97715 0.96137 0.81538 0.88168 1.23169 0.94247 1.01310 0.96941 1.19794 0.86863 0.96882 0.84389 0.89005 1.44365 1.01734 1.10065 1.80518 1.17642 0.84748 0.92153 0.93393 1.20133 0.96589 0.93510 1.20179 1.20613 0.92480 0.98252 0.97250 1.21010 0.97048 0.94302 1.17953 1.17683 0.93226 0.91410 0.87229 1.19758 0.95519 1.06177 1.32257 0.91257 1.26652 0.98997 0.99853 0.91960 1.69896 1.29688 1.25580 1.19437 0.85339 0.78495 0.77110 0.79218 1.18990 1.18800 1.18510 1.20641 0.91412 0.98747 1.16749 1.25301 0.91933 0.95487 0.98316 1.69843 1.27977 1.27425 0.98600 1.22785 0.97019 1.01857 0.98969 1.22802 1.05681 1.05213 0.82416 1.46897 1.27773 1.33007 1.07779 0.87735 0.91337 0.91795 0.85902 0.85672 0.76848 0.87858 0.86993 0.89303 0.90351 0.87884 0.79794 0.77775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.45 71.98 0.68 -0.84 16 2 C 0.12 2.09 4.13 45.36 0.19 2.28 16 3 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -2.06 6.27 31.59 0.20 -1.87 16 5 C 0.23 6.89 2.88 45.04 0.13 7.02 16 6 H 0.09 2.95 6.58 -2.39 -0.02 2.93 16 7 N -0.73 -27.23 5.30 -318.87 -1.69 -28.92 16 8 C 0.22 10.61 6.64 38.17 0.25 10.86 16 9 C -0.28 -13.53 9.23 22.59 0.21 -13.32 16 10 C -0.07 -3.32 10.01 22.20 0.22 -3.10 16 11 C -0.28 -15.35 9.79 22.75 0.22 -15.13 16 12 C 0.11 6.24 5.57 -21.31 -0.12 6.12 16 13 C -0.51 -29.12 9.05 23.46 0.21 -28.90 16 14 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 15 C 0.04 2.11 5.14 85.25 0.44 2.55 16 16 N -0.82 -43.54 10.96 21.82 0.24 -43.30 16 17 Si 0.98 39.61 29.60 68.60 2.03 41.64 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 C -0.25 -13.81 8.53 22.86 0.20 -13.61 16 22 C 0.15 5.21 8.22 138.36 1.14 6.35 16 23 N -0.52 -20.18 11.26 -187.33 -2.11 -22.29 16 24 C -0.06 -1.78 11.86 83.52 0.99 -0.79 16 25 C -0.03 -0.68 12.00 83.01 1.00 0.31 16 26 N -0.47 -11.98 3.27 -486.95 -1.59 -13.57 16 27 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 1.56 7.91 -2.39 -0.02 1.54 16 31 H 0.13 1.78 8.04 -2.39 -0.02 1.76 16 32 H 0.40 13.51 8.58 -92.71 -0.80 12.72 16 33 H 0.10 4.63 6.25 -2.91 -0.02 4.62 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 37 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 38 H 0.19 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.21 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -73.71 324.99 3.10 -70.61 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: 0.27 Total: 37.91 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 5.95 Total: -42.07 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -5.15 Total: -108.08 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -73.71 3.10 -70.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.914 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds