Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 5 5 C 1.52998 * 109.47214 * 174.99940 * 4 2 1 6 6 C 1.50703 * 109.47269 * 180.02562 * 5 4 2 7 7 C 1.38415 * 120.02712 * 269.72768 * 6 5 4 8 8 F 1.35100 * 120.01066 * 359.97408 * 7 6 5 9 9 C 1.38472 * 119.97592 * 179.70221 * 7 6 5 10 10 C 1.38205 * 120.02535 * 0.59388 * 9 7 6 11 11 C 1.38217 * 120.04751 * 359.68184 * 10 9 7 12 12 C 1.38417 * 120.02338 * 90.00502 * 6 5 4 13 13 F 1.35098 * 120.01399 * 359.97438 * 12 6 5 14 14 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 15 15 C 1.46906 * 110.99888 * 274.99671 * 14 2 1 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 2 17 17 C 1.50706 * 109.46953 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.46931 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00088 * 21 19 17 25 25 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 26 26 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 27 27 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47741 * 294.99917 * 4 2 1 29 29 H 1.09007 * 109.47097 * 55.00745 * 4 2 1 30 30 H 1.09002 * 109.47191 * 300.00474 * 5 4 2 31 31 H 1.09007 * 109.46954 * 60.00361 * 5 4 2 32 32 H 1.08001 * 119.98600 * 180.31896 * 9 7 6 33 33 H 1.07997 * 119.98061 * 179.70221 * 10 9 7 34 34 H 1.08005 * 119.98502 * 179.97438 * 11 10 9 35 35 H 1.00902 * 111.00533 * 151.04078 * 14 2 1 36 36 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 37 37 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 38 38 H 1.09000 * 109.47486 * 299.99976 * 16 15 14 39 39 H 1.09001 * 109.47362 * 60.00699 * 16 15 14 40 40 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 6 4.4016 -2.6650 -2.4821 8 9 4.2787 -3.3386 -1.3176 9 6 4.8572 -3.3178 -3.6152 10 6 4.9894 -2.6273 -4.8050 11 6 4.6609 -1.2861 -4.8671 12 6 4.1994 -0.6328 -3.7368 13 9 3.8779 0.6779 -3.7979 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5950 -0.5333 3.5744 17 6 2.6589 0.4053 4.7518 18 1 2.3631 1.4376 4.6361 19 6 3.0950 -0.0537 5.9766 20 7 3.4547 -1.3108 6.1175 21 14 3.1748 1.1099 7.4357 22 1 1.8809 1.0802 8.1638 23 1 4.2664 0.6850 8.3484 24 1 3.4406 2.4895 6.9546 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4259 32 1 5.1135 -4.3659 -3.5679 33 1 5.3493 -3.1360 -5.6871 34 1 4.7650 -0.7474 -5.7974 35 1 2.9172 -1.1207 1.0287 36 1 2.7589 1.0461 2.1182 37 1 1.0870 0.6163 2.5525 38 1 1.9183 -1.3566 3.8030 39 1 3.5904 -0.9273 3.3691 40 1 3.7612 -1.6339 6.9793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338012244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -89.939662 kcal Electronic energy + Delta-G solvation = -21728.681771 eV Core-core repulsion = 18178.308308 eV Total energy + Delta-G solvation = -3550.373464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.22972 -49.11474 -39.23802 -37.43425 -34.18353 -32.92790 -31.23999 -30.57093 -28.71460 -28.00718 -24.66581 -23.74436 -23.12277 -21.63699 -20.48459 -20.02932 -18.35864 -17.56845 -16.41928 -16.28011 -16.14150 -15.79562 -15.46122 -15.37976 -14.92586 -14.59847 -14.40225 -13.89115 -13.77223 -13.20755 -13.00627 -12.76552 -12.42613 -12.23898 -12.19807 -12.08496 -11.67995 -11.54727 -11.33240 -10.98816 -10.92983 -10.86591 -10.54253 -10.45169 -9.88976 -9.30239 -9.11440 -9.06499 -9.03692 -8.31832 -7.74596 -5.96186 -3.98648 0.67090 0.68940 3.05499 3.34365 3.40199 3.43560 3.63892 4.14068 4.21780 4.38324 4.46329 4.49460 4.76792 4.82042 5.03482 5.09939 5.18276 5.39565 5.44477 5.55353 5.65118 5.67103 5.68326 5.72857 5.82844 5.83410 5.97256 6.11931 6.17754 6.29472 6.39782 6.46884 6.49106 6.59214 7.05049 7.56593 7.78248 7.88354 8.03133 8.13913 8.47993 9.08744 9.64858 11.15245 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.003256 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.780538 B = 8597.053497 C = 9090.096708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.111 4.111 5 C -0.088 4.088 6 C -0.146 4.146 7 C 0.134 3.866 8 F -0.122 7.122 9 C -0.164 4.164 10 C -0.069 4.069 11 C -0.166 4.166 12 C 0.128 3.872 13 F -0.129 7.129 14 N -0.688 5.688 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.335 0.665 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -2.036 -24.943 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.149 4.149 5 C -0.126 4.126 6 C -0.148 4.148 7 C 0.114 3.886 8 F -0.100 7.100 9 C -0.183 4.183 10 C -0.088 4.088 11 C -0.184 4.184 12 C 0.109 3.891 13 F -0.107 7.107 14 N -0.321 5.321 15 C -0.062 4.062 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.368 -2.374 -24.592 24.744 hybrid contribution 0.835 1.229 0.840 1.706 sum 2.203 -1.146 -23.752 23.882 Atomic orbital electron populations 1.21756 0.94837 1.02092 1.00812 1.21489 0.95892 0.95731 0.89692 0.94318 1.21733 0.92991 1.02099 0.98090 1.20625 0.97041 1.00692 0.94194 1.19979 1.04557 0.93661 0.96568 1.17272 0.99679 0.89223 0.82425 1.91586 1.93235 1.79400 1.45785 1.21245 1.03423 1.01663 0.91935 1.20818 0.97268 0.93102 0.97566 1.21194 1.03330 0.95848 0.98077 1.17224 0.99691 0.78556 0.93631 1.91525 1.90165 1.32207 1.96839 1.60681 1.33255 1.34128 1.04009 1.22193 0.99513 0.93492 0.91020 1.19067 0.96194 0.95798 0.90170 1.21185 1.43820 0.96355 0.94601 0.92808 1.25005 0.95453 0.95098 0.98834 1.69975 1.44536 1.14352 1.24381 0.86595 0.77671 0.81152 0.82579 1.20644 1.21237 1.19940 0.92468 0.93353 0.92185 0.90824 0.91554 0.90118 0.89511 0.83981 0.84045 0.84156 0.84559 0.96803 0.92359 0.95663 0.96895 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.41 37.15 0.35 -1.59 16 2 C 0.08 1.24 2.65 -67.72 -0.18 1.06 16 3 H 0.04 0.60 7.80 -51.93 -0.40 0.20 16 4 C -0.11 -1.42 4.79 -26.73 -0.13 -1.55 16 5 C -0.09 -1.11 4.82 -27.88 -0.13 -1.24 16 6 C -0.15 -1.67 5.15 -104.49 -0.54 -2.21 16 7 C 0.13 1.49 7.24 -39.43 -0.29 1.20 16 8 F -0.12 -1.60 16.47 2.25 0.04 -1.56 16 9 C -0.16 -1.36 10.02 -39.51 -0.40 -1.76 16 10 C -0.07 -0.47 10.04 -39.60 -0.40 -0.86 16 11 C -0.17 -1.29 10.03 -39.50 -0.40 -1.69 16 12 C 0.13 1.33 7.24 -39.43 -0.29 1.05 16 13 F -0.13 -1.46 16.48 2.25 0.04 -1.42 16 14 N -0.69 -12.72 6.31 -106.73 -0.67 -13.39 16 15 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 16 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.01 7.64 -51.93 -0.40 0.61 16 31 H 0.09 1.19 5.92 -51.92 -0.31 0.88 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.34 6.07 6.47 -39.29 -0.25 5.82 16 36 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -31.31 339.87 -8.63 -39.94 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.90 Total: 0.46 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.97 Total: -19.50 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.06 Total: -40.07 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.07 Total: -2.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.31 -8.63 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338012244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.000 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds