Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 5 5 C 1.52998 * 109.47214 * 174.99940 * 4 2 1 6 6 C 1.50703 * 109.47269 * 180.02562 * 5 4 2 7 7 C 1.38415 * 120.02712 * 269.72768 * 6 5 4 8 8 F 1.35100 * 120.01066 * 359.97408 * 7 6 5 9 9 C 1.38472 * 119.97592 * 179.70221 * 7 6 5 10 10 C 1.38205 * 120.02535 * 0.59388 * 9 7 6 11 11 C 1.38217 * 120.04751 * 359.68184 * 10 9 7 12 12 C 1.38417 * 120.02338 * 90.00502 * 6 5 4 13 13 F 1.35098 * 120.01399 * 359.97438 * 12 6 5 14 14 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 15 15 C 1.46906 * 110.99888 * 274.99671 * 14 2 1 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 2 17 17 C 1.50706 * 109.46953 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.46931 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00088 * 21 19 17 25 25 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 26 26 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 27 27 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47741 * 294.99917 * 4 2 1 29 29 H 1.09007 * 109.47097 * 55.00745 * 4 2 1 30 30 H 1.09002 * 109.47191 * 300.00474 * 5 4 2 31 31 H 1.09007 * 109.46954 * 60.00361 * 5 4 2 32 32 H 1.08001 * 119.98600 * 180.31896 * 9 7 6 33 33 H 1.07997 * 119.98061 * 179.70221 * 10 9 7 34 34 H 1.08005 * 119.98502 * 179.97438 * 11 10 9 35 35 H 1.00902 * 111.00533 * 151.04078 * 14 2 1 36 36 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 37 37 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 38 38 H 1.09000 * 109.47486 * 299.99976 * 16 15 14 39 39 H 1.09001 * 109.47362 * 60.00699 * 16 15 14 40 40 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 6 4.4016 -2.6650 -2.4821 8 9 4.2787 -3.3386 -1.3176 9 6 4.8572 -3.3178 -3.6152 10 6 4.9894 -2.6273 -4.8050 11 6 4.6609 -1.2861 -4.8671 12 6 4.1994 -0.6328 -3.7368 13 9 3.8779 0.6779 -3.7979 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5950 -0.5333 3.5744 17 6 2.6589 0.4053 4.7518 18 1 2.3631 1.4376 4.6361 19 6 3.0950 -0.0537 5.9766 20 7 3.4547 -1.3108 6.1175 21 14 3.1748 1.1099 7.4357 22 1 1.8809 1.0802 8.1638 23 1 4.2664 0.6850 8.3484 24 1 3.4406 2.4895 6.9546 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4259 32 1 5.1135 -4.3659 -3.5679 33 1 5.3493 -3.1360 -5.6871 34 1 4.7650 -0.7474 -5.7974 35 1 2.9172 -1.1207 1.0287 36 1 2.7589 1.0461 2.1182 37 1 1.0870 0.6163 2.5525 38 1 1.9183 -1.3566 3.8030 39 1 3.5904 -0.9273 3.3691 40 1 3.7612 -1.6339 6.9793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338012244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -107.602967 kcal Electronic energy + Delta-G solvation = -21729.447710 eV Core-core repulsion = 18178.308308 eV Total energy + Delta-G solvation = -3551.139402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02170 -50.00690 -39.99602 -38.72754 -35.81807 -34.52672 -32.79997 -31.24945 -29.97730 -29.52958 -26.21006 -25.19105 -23.84402 -22.55847 -22.37494 -21.28162 -19.12106 -18.54603 -18.34499 -17.33227 -16.96562 -16.66732 -16.58588 -16.48897 -16.30663 -16.17132 -15.42515 -15.17281 -14.84672 -14.50991 -14.38751 -14.09722 -13.72248 -13.47909 -13.27995 -12.97468 -12.91867 -12.85667 -12.85013 -12.50757 -12.42641 -12.33507 -12.02684 -11.87891 -11.55901 -11.39256 -11.18471 -10.58202 -9.84040 -9.75031 -9.29575 -8.21602 -6.33703 -0.02442 -0.01335 1.38724 1.40957 1.51930 2.38423 2.39293 2.90466 3.11388 3.31550 3.37701 3.42931 3.62814 3.85993 3.96704 4.05910 4.19429 4.23843 4.44999 4.49126 4.53057 4.61883 4.70600 4.79641 4.87370 4.90575 4.96298 4.98245 5.04544 5.08875 5.13753 5.18325 5.21487 5.39685 5.43592 5.65129 5.77793 5.80132 6.13694 6.29215 6.52598 6.83330 7.35574 8.90707 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.003256 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.780538 B = 8597.053497 C = 9090.096708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.039 0.961 4 C -0.098 4.098 5 C -0.085 4.085 6 C -0.164 4.164 7 C 0.104 3.896 8 F -0.143 7.143 9 C -0.159 4.159 10 C -0.055 4.055 11 C -0.155 4.155 12 C 0.111 3.889 13 F -0.139 7.139 14 N -0.694 5.694 15 C 0.085 3.915 16 C 0.033 3.967 17 C -0.546 4.546 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.969 3.031 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.168 0.832 35 H 0.335 0.665 36 H 0.016 0.984 37 H 0.058 0.942 38 H -0.007 1.007 39 H -0.012 1.012 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -1.341 -27.002 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.136 4.136 5 C -0.123 4.123 6 C -0.165 4.165 7 C 0.085 3.915 8 F -0.122 7.122 9 C -0.177 4.177 10 C -0.072 4.072 11 C -0.174 4.174 12 C 0.092 3.908 13 F -0.117 7.117 14 N -0.327 5.327 15 C -0.044 4.044 16 C -0.005 4.005 17 C -0.584 4.584 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.201 0.799 34 H 0.186 0.814 35 H 0.154 0.846 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.012 0.988 39 H 0.006 0.994 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.534 -1.674 -26.674 26.770 hybrid contribution 0.810 0.948 1.372 1.854 sum 2.344 -0.726 -25.302 25.420 Atomic orbital electron populations 1.21747 0.93781 1.02111 1.01553 1.21617 0.96658 0.95617 0.89051 0.94317 1.21608 0.93213 1.01406 0.97397 1.20494 0.96851 1.00474 0.94434 1.19903 1.06067 0.94049 0.96512 1.17634 1.01630 0.89454 0.82783 1.91529 1.93678 1.79770 1.47181 1.21583 1.02049 1.02702 0.91404 1.21310 0.95254 0.92566 0.98100 1.21584 1.01406 0.96367 0.98042 1.17456 1.00864 0.78336 0.94177 1.91497 1.90443 1.32878 1.96893 1.60630 1.33409 1.33901 1.04727 1.21806 0.99044 0.93155 0.90368 1.18913 0.94192 0.95080 0.92302 1.21605 1.44150 0.96954 0.95685 0.92170 1.26011 0.94685 0.96923 1.02219 1.70116 1.45153 1.16464 1.25438 0.85391 0.78045 0.78978 0.78281 1.19645 1.20580 1.18695 0.93832 0.90485 0.92524 0.91509 0.89756 0.90456 0.91579 0.81999 0.79918 0.81420 0.84572 0.96620 0.92308 0.98822 0.99351 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.41 71.98 0.68 -3.01 16 2 C 0.08 2.42 2.65 44.91 0.12 2.53 16 3 H 0.04 1.19 7.80 -2.39 -0.02 1.17 16 4 C -0.10 -2.52 4.79 30.59 0.15 -2.37 16 5 C -0.08 -2.22 4.82 29.85 0.14 -2.08 16 6 C -0.16 -3.76 5.15 -19.78 -0.10 -3.86 16 7 C 0.10 2.32 7.24 22.37 0.16 2.48 16 8 F -0.14 -3.94 16.47 44.97 0.74 -3.20 16 9 C -0.16 -2.31 10.02 22.32 0.22 -2.08 16 10 C -0.05 -0.53 10.04 22.26 0.22 -0.30 16 11 C -0.16 -1.94 10.03 22.32 0.22 -1.72 16 12 C 0.11 2.17 7.24 22.37 0.16 2.33 16 13 F -0.14 -3.01 16.48 44.97 0.74 -2.27 16 14 N -0.69 -26.55 6.31 -491.58 -3.10 -29.66 16 15 C 0.09 3.82 5.42 86.30 0.47 4.29 16 16 C 0.03 1.83 5.23 29.85 0.16 1.99 16 17 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 20 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 21 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.04 1.30 7.45 -2.39 -0.02 1.28 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 2.01 7.64 -2.39 -0.02 1.99 16 31 H 0.07 1.96 5.92 -2.38 -0.01 1.95 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.33 12.85 6.47 -89.69 -0.58 12.27 16 36 H 0.02 0.69 8.06 -2.39 -0.02 0.67 16 37 H 0.06 2.62 7.44 -2.39 -0.02 2.60 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -69.69 339.87 4.45 -65.24 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.45 Total: 14.15 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.30 Total: -33.46 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -2.82 Total: -87.88 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 1.48 Total: -5.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.69 4.45 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338012244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.358 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds