Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 C 1.53008 * 109.47067 * 240.00349 * 2 1 3 5 5 C 1.50700 * 109.46975 * 59.99680 * 4 2 1 6 6 H 1.08000 * 120.00456 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00055 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00639 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99709 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47160 * 90.00004 * 9 7 5 11 11 H 1.48503 * 109.46813 * 210.00059 * 9 7 5 12 12 H 1.48497 * 109.46899 * 329.99849 * 9 7 5 13 13 C 1.52997 * 109.47618 * 120.00201 * 2 1 3 14 14 N 1.46901 * 109.46698 * 300.00035 * 13 2 1 15 15 C 1.38411 * 110.99903 * 179.97438 * 14 13 2 16 16 C 1.40331 * 120.26401 * 119.99903 * 15 14 13 17 17 C 1.43205 * 120.13765 * 359.97438 * 16 15 14 18 18 N 5.14859 * 111.58175 * 58.66304 * 2 1 3 19 19 C 1.39646 * 119.72727 * 180.25661 * 16 15 14 20 20 C 1.38073 * 120.26378 * 359.46809 * 19 16 15 21 21 C 1.38080 * 120.54361 * 0.51429 * 20 19 16 22 22 C 1.39642 * 120.26126 * 359.76442 * 21 20 19 23 23 C 1.43203 * 120.13126 * 179.97438 * 22 21 20 24 24 N 4.16474 * 71.44012 * 146.53639 * 2 1 3 25 25 H 1.09003 * 109.47539 * 299.99529 * 1 2 3 26 26 H 1.08998 * 109.47559 * 59.99772 * 1 2 3 27 27 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47295 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46902 * 300.00466 * 3 2 1 30 30 H 1.08998 * 109.47254 * 60.00098 * 3 2 1 31 31 H 1.08999 * 109.47152 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.46619 * 299.99756 * 4 2 1 33 33 H 0.97000 * 120.00683 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47216 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47211 * 60.00105 * 13 2 1 36 36 H 1.00901 * 111.00147 * 56.04717 * 14 13 2 37 37 H 1.07998 * 119.86714 * 179.70258 * 19 16 15 38 38 H 1.07994 * 119.73022 * 180.26415 * 20 19 16 39 39 H 1.07993 * 119.86399 * 179.74225 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8701 -0.4820 -3.7320 8 7 1.4313 0.1376 -4.8058 9 14 2.9430 -2.0016 -3.9035 10 1 2.0836 -3.2118 -3.9488 11 1 3.7349 -1.9096 -5.1564 12 1 3.8634 -2.0913 -2.7416 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 1.9938 -0.6567 3.5996 16 6 2.7867 0.0398 4.5246 17 6 3.1424 1.4056 4.2821 18 7 3.4237 2.4899 4.0892 19 6 3.2324 -0.6063 5.6796 20 6 2.8868 -1.9216 5.9185 21 6 2.1068 -2.6172 5.0162 22 6 1.6537 -1.9948 3.8512 23 6 0.8453 -2.7190 2.9169 24 7 0.2043 -3.2937 2.1770 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2493 33 1 1.6650 -0.1941 -5.6869 34 1 3.1301 -0.7208 1.2493 35 1 1.6768 -1.7489 1.2491 36 1 0.5439 0.0413 2.4401 37 1 3.8468 -0.0740 6.3905 38 1 3.2327 -2.4115 6.8166 39 1 1.8465 -3.6468 5.2121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340892386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = 84.416215 kcal Electronic energy + Delta-G solvation = -21517.625127 eV Core-core repulsion = 18425.501488 eV Total energy + Delta-G solvation = -3092.123639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62212 -37.78899 -36.86893 -36.17647 -34.78734 -32.25643 -31.98163 -29.84149 -27.62992 -26.46301 -25.81432 -24.61378 -23.21460 -21.96119 -20.24009 -18.16659 -17.37273 -17.09213 -16.78247 -16.40616 -15.42939 -15.00648 -14.49890 -14.15426 -13.80953 -13.70220 -13.61544 -13.31411 -13.30935 -13.18600 -12.74487 -12.64428 -12.33973 -12.27971 -12.20469 -12.01158 -11.92079 -11.15437 -11.06562 -10.89920 -10.55027 -10.45162 -9.89697 -9.72485 -9.58473 -9.41105 -9.09949 -8.99206 -8.75688 -8.50381 -6.00673 -3.97265 0.19182 0.47073 2.34902 2.40392 2.70305 3.14375 3.32208 3.39615 3.42737 3.49045 3.59798 3.74119 3.76928 4.43774 4.47766 4.53809 4.78433 4.99357 5.11856 5.30420 5.36293 5.39383 5.63040 5.69228 5.73258 5.77600 5.96210 6.04097 6.14393 6.28146 6.50480 6.59612 6.73078 6.87148 7.02430 7.08608 7.14131 7.17755 7.25065 7.28242 7.42551 7.50077 7.82659 8.57730 9.04483 9.62123 11.12313 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.004738 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.326429 B = 5907.978238 C = 6595.230133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C -0.119 4.119 4 C -0.003 4.003 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.653 5.653 15 C 0.200 3.800 16 C -0.010 4.010 17 C 0.265 3.735 18 N -0.405 5.405 19 C -0.039 4.039 20 C -0.129 4.129 21 C -0.035 4.035 22 C -0.067 4.067 23 C 0.240 3.760 24 N -0.388 5.388 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.364 0.636 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -5.377 25.368 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.176 4.176 4 C -0.041 4.041 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.701 3.299 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.192 1.192 13 C -0.063 4.063 14 N -0.288 5.288 15 C 0.097 3.903 16 C -0.015 4.015 17 C -0.051 4.051 18 N -0.080 5.080 19 C -0.061 4.061 20 C -0.147 4.147 21 C -0.057 4.057 22 C -0.073 4.073 23 C -0.075 4.075 24 N -0.063 5.063 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.192 0.808 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.714 -4.104 23.669 24.175 hybrid contribution 0.154 -1.910 -0.048 1.917 sum 2.868 -6.014 23.622 24.543 Atomic orbital electron populations 1.21803 0.95344 1.00746 1.01085 1.20434 0.95244 0.96262 0.92748 1.21630 0.99822 0.95186 1.00944 1.19614 0.96072 0.95270 0.93097 1.21087 1.31631 1.13256 0.88589 0.90365 1.24990 0.95730 0.96672 0.96001 1.69900 1.46033 1.40567 0.97835 0.86876 0.81335 0.84094 0.77559 1.20450 1.21450 1.19159 1.22507 1.00491 0.95323 0.87967 1.57827 1.17755 1.53166 1.00068 1.18761 0.92250 0.88476 0.90784 1.15852 1.02065 0.87236 0.96350 1.25101 0.94010 0.92245 0.93753 1.81265 1.08042 1.11627 1.07031 1.21381 0.95769 0.94529 0.94380 1.20980 0.99398 0.94043 1.00312 1.21327 0.93460 1.00049 0.90849 1.16797 1.02116 0.93847 0.94556 1.25334 0.94153 0.94573 0.93489 1.81346 1.09021 1.07851 1.08049 0.94792 0.90717 0.93868 0.94075 0.91773 0.93742 0.96614 0.97319 0.92843 0.90542 0.94312 0.80811 0.83957 0.83846 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.89 37.16 0.29 -2.17 16 2 C -0.05 -0.89 0.60 -154.51 -0.09 -0.99 16 3 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.15 16 5 C -0.51 -14.14 8.20 -34.44 -0.28 -14.42 16 6 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 9 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.06 1.00 4.21 -3.83 -0.02 0.99 16 14 N -0.65 -8.39 4.79 -57.92 -0.28 -8.67 16 15 C 0.20 2.02 5.59 -83.32 -0.47 1.55 16 16 C -0.01 -0.09 5.75 -106.66 -0.61 -0.70 16 17 C 0.26 3.10 14.81 -22.45 -0.33 2.76 16 18 N -0.40 -5.84 18.54 41.87 0.78 -5.06 16 19 C -0.04 -0.20 9.74 -39.12 -0.38 -0.58 16 20 C -0.13 -0.48 10.00 -39.70 -0.40 -0.87 16 21 C -0.04 -0.19 9.74 -39.12 -0.38 -0.57 16 22 C -0.07 -0.60 5.62 -106.66 -0.60 -1.20 16 23 C 0.24 2.87 12.24 -22.50 -0.28 2.60 16 24 N -0.39 -5.78 18.12 41.80 0.76 -5.03 16 25 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 26 H 0.07 1.57 6.62 -51.93 -0.34 1.23 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.39 6.62 -51.93 -0.34 1.04 16 30 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.04 0.63 4.90 -51.93 -0.25 0.37 16 36 H 0.36 4.52 6.73 -39.29 -0.26 4.25 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -33.32 331.30 -5.80 -39.12 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.72 Total: -1.71 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -3.43 Total: -13.89 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 2.03 Total: -45.95 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.32 -5.80 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340892386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.539 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds