Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47032 * 2 1 4 4 C 1.52999 * 109.47641 * 240.00191 * 2 1 3 5 5 C 1.50697 * 109.47220 * 59.99429 * 4 2 1 6 6 H 1.07999 * 120.00066 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00012 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00009 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00305 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46610 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47235 * 119.99929 * 9 7 5 12 12 H 1.48496 * 109.47348 * 240.00836 * 9 7 5 13 13 C 1.53002 * 109.47351 * 119.99736 * 2 1 3 14 14 N 1.46902 * 109.47026 * 300.00308 * 13 2 1 15 15 C 1.46894 * 111.00133 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.47303 * 179.97438 * 15 14 13 17 17 C 1.38425 * 120.02136 * 90.00286 * 16 15 14 18 18 F 1.35101 * 120.01402 * 359.70506 * 17 16 15 19 19 C 1.38476 * 119.97328 * 179.97438 * 17 16 15 20 20 C 1.38207 * 120.02410 * 0.02562 * 19 17 16 21 21 C 1.38207 * 120.05360 * 359.97438 * 20 19 17 22 22 C 1.38412 * 120.02814 * 269.97919 * 16 15 14 23 23 F 1.35096 * 120.01191 * 0.02562 * 22 16 15 24 24 H 1.08993 * 109.47300 * 299.99988 * 1 2 3 25 25 H 1.09002 * 109.47085 * 60.00173 * 1 2 3 26 26 H 1.08999 * 109.46603 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47208 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47044 * 299.99852 * 3 2 1 29 29 H 1.09007 * 109.46919 * 59.99758 * 3 2 1 30 30 H 1.08998 * 109.47224 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46521 * 299.99453 * 4 2 1 32 32 H 0.97004 * 119.99650 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47147 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.46941 * 60.00048 * 13 2 1 35 35 H 1.00899 * 111.00337 * 303.95316 * 14 13 2 36 36 H 1.09008 * 109.46837 * 60.00474 * 15 14 13 37 37 H 1.09006 * 109.47552 * 300.00415 * 15 14 13 38 38 H 1.08001 * 119.98752 * 179.97438 * 19 17 16 39 39 H 1.08000 * 119.97200 * 180.02562 * 20 19 17 40 40 H 1.07995 * 119.99247 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8714 -0.4816 -3.7319 8 7 2.6276 -1.5508 -3.8525 9 14 1.2493 0.3993 -5.2572 10 1 0.4245 1.5662 -4.8530 11 1 2.4046 0.8662 -6.0650 12 1 0.4246 -0.5339 -6.0660 13 6 2.0401 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6950 3.6703 16 6 1.5002 0.0423 4.8771 17 6 0.2819 -0.3102 5.4318 18 9 -0.4438 -1.3115 4.8879 19 6 -0.1953 0.3677 6.5410 20 6 0.5441 1.3961 7.0939 21 6 1.7607 1.7490 6.5410 22 6 2.2401 1.0722 5.4320 23 9 3.4292 1.4172 4.8917 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1301 -0.7215 -1.2489 31 1 1.6768 -1.7489 -1.2491 32 1 2.8620 -1.8821 -4.7336 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 1.8197 0.9437 2.4402 36 1 3.1108 -0.6951 3.6874 37 1 1.6572 -1.7225 3.6870 38 1 -1.1459 0.0931 6.9737 39 1 0.1714 1.9240 7.9593 40 1 2.3374 2.5530 6.9736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344831671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = -83.530308 kcal Electronic energy + Delta-G solvation = -22159.699128 eV Core-core repulsion = 18609.603595 eV Total energy + Delta-G solvation = -3550.095533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.21051 -49.06638 -39.16354 -37.59917 -34.74924 -32.39740 -30.98786 -30.53720 -27.11384 -26.32733 -26.20709 -24.38267 -23.08527 -22.32922 -21.63279 -18.37870 -17.91857 -17.52235 -16.34638 -16.22806 -16.11480 -15.76691 -15.40818 -15.17803 -14.73561 -14.58201 -14.22481 -14.07771 -13.26587 -13.04510 -12.97641 -12.62312 -12.45880 -12.16490 -11.98475 -11.96142 -11.68771 -11.32769 -10.96138 -10.84987 -10.73238 -10.47248 -10.25227 -10.09396 -9.66339 -9.25653 -8.99688 -8.95918 -8.79530 -8.29734 -8.13313 -5.94091 -3.94008 0.69861 0.73138 3.08006 3.34174 3.41899 3.45603 3.67942 4.17281 4.24401 4.41257 4.47917 4.52717 4.71701 4.87827 5.28580 5.39468 5.41877 5.62837 5.64869 5.69681 5.72444 5.77341 5.86009 5.89095 6.00716 6.26076 6.34956 6.50762 6.53279 6.69282 6.80939 6.86054 7.18894 7.23349 7.28661 7.37707 7.61962 7.73301 7.88054 8.06440 8.50930 9.11558 9.68743 11.17661 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031084 B = 0.003405 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.565479 B = 8221.797489 C = 8492.205817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.678 5.678 15 C 0.096 3.904 16 C -0.149 4.149 17 C 0.151 3.849 18 F -0.122 7.122 19 C -0.168 4.168 20 C -0.065 4.065 21 C -0.168 4.168 22 C 0.132 3.868 23 F -0.129 7.129 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.339 0.661 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 5.113 23.477 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.310 5.310 15 C -0.033 4.033 16 C -0.151 4.151 17 C 0.131 3.869 18 F -0.101 7.101 19 C -0.187 4.187 20 C -0.083 4.083 21 C -0.186 4.186 22 C 0.112 3.888 23 F -0.108 7.108 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.323 4.637 23.282 23.971 hybrid contribution 0.803 0.508 -1.132 1.478 sum -2.520 5.144 22.150 22.878 Atomic orbital electron populations 1.21597 0.94944 1.00633 1.00149 1.20634 0.95917 0.95004 0.94279 1.21776 0.99736 0.96744 1.00398 1.19126 0.95903 0.95219 0.90128 1.21276 1.30619 1.11897 0.90588 0.92223 1.25020 0.95424 0.95139 0.99065 1.69981 1.37381 1.23257 1.23154 0.86606 0.78583 0.79746 0.83491 1.19768 1.21207 1.21154 1.22152 0.96493 0.98223 0.88978 1.60653 1.63457 1.06434 1.00488 1.20725 0.97524 0.98152 0.86927 1.19937 0.95516 0.99386 1.00306 1.17180 0.89260 0.87567 0.92908 1.91557 1.76047 1.57534 1.84927 1.21229 1.02298 0.98320 0.96882 1.20816 0.92980 0.95443 0.99070 1.21176 0.98340 1.02344 0.96788 1.17288 0.82379 0.95271 0.93867 1.91535 1.43073 1.90978 1.85195 0.93953 0.92663 0.94112 0.94047 0.91639 0.94911 0.96890 0.96637 0.93239 0.95613 0.91322 0.84149 0.93749 0.89452 0.84059 0.84056 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.48 7.89 37.16 0.29 -2.19 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -14.01 7.65 -34.44 -0.26 -14.27 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.32 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.25 4.65 -3.82 -0.02 1.23 16 14 N -0.68 -10.53 5.70 -115.06 -0.66 -11.19 16 15 C 0.10 1.29 5.46 -4.98 -0.03 1.27 16 16 C -0.15 -1.79 5.40 -104.49 -0.56 -2.36 16 17 C 0.15 1.71 7.24 -39.42 -0.29 1.43 16 18 F -0.12 -1.59 16.48 2.25 0.04 -1.55 16 19 C -0.17 -1.42 10.03 -39.50 -0.40 -1.81 16 20 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 21 C -0.17 -1.38 10.03 -39.50 -0.40 -1.78 16 22 C 0.13 1.45 7.24 -39.43 -0.29 1.16 16 23 F -0.13 -1.57 16.48 2.25 0.04 -1.54 16 24 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 25 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 29 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.34 5.19 6.76 -39.29 -0.27 4.93 16 36 H 0.04 0.59 7.64 -51.92 -0.40 0.20 16 37 H 0.09 1.18 7.65 -51.93 -0.40 0.79 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -30.26 333.06 -7.91 -38.17 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.72 Total: -0.06 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.34 Total: -19.27 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.08 Total: -37.57 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.26 -7.91 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344831671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.355 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds