Wall clock time and date at job start Tue Mar 31 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 5 5 C 1.50701 * 109.46921 * 66.04817 * 4 2 1 6 6 C 1.33639 * 126.03597 * 89.99849 * 5 4 2 7 7 N 1.31781 * 114.50139 * 179.97438 * 6 5 4 8 8 C 1.29033 * 117.12391 * 0.02562 * 7 6 5 9 9 C 1.50693 * 124.91551 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46852 * 89.97988 * 9 8 7 11 11 C 1.46895 * 111.00104 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47455 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47233 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47180 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99975 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47311 * 60.00112 * 18 16 14 20 20 H 1.48496 * 109.47238 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47663 * 299.99809 * 18 16 14 22 22 S 1.70977 * 110.16400 * 359.72624 * 8 7 6 23 23 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 24 24 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 25 25 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 26 26 H 1.08998 * 109.46995 * 183.95294 * 3 2 1 27 27 H 1.09001 * 109.46977 * 303.95046 * 3 2 1 28 28 H 1.08998 * 109.47089 * 63.95199 * 3 2 1 29 29 H 1.09002 * 109.47401 * 306.04845 * 4 2 1 30 30 H 1.09001 * 109.46874 * 186.04858 * 4 2 1 31 31 H 1.08006 * 122.75162 * 0.02562 * 6 5 4 32 32 H 1.08996 * 109.47467 * 209.97467 * 9 8 7 33 33 H 1.09004 * 109.47779 * 329.98128 * 9 8 7 34 34 H 1.00901 * 110.99699 * 303.95194 * 10 9 8 35 35 H 1.08997 * 109.47325 * 300.00377 * 11 10 9 36 36 H 1.09003 * 109.47337 * 59.99654 * 11 10 9 37 37 H 1.08997 * 109.47479 * 300.00671 * 12 11 10 38 38 H 1.09000 * 109.46612 * 60.00221 * 12 11 10 39 39 H 1.09002 * 109.47344 * 300.00238 * 13 12 11 40 40 H 1.09003 * 109.47432 * 60.00120 * 13 12 11 41 41 H 0.96996 * 120.00382 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9730 6 6 2.3719 -3.1454 0.3484 7 7 1.8402 -4.3511 0.3391 8 6 0.6973 -4.4946 0.9206 9 6 -0.0665 -5.7903 1.0138 10 7 0.3286 -6.5048 2.2350 11 6 -0.3978 -7.7754 2.3599 12 6 0.0398 -8.4895 3.6403 13 6 -0.7173 -9.8125 3.7707 14 6 -0.2867 -10.5156 5.0322 15 1 0.4532 -10.0641 5.6763 16 6 -0.8367 -11.7358 5.3635 17 7 -1.7375 -12.2859 4.5789 18 14 -0.3024 -12.6074 6.9268 19 1 -0.6027 -11.7481 8.1001 20 1 -1.0373 -13.8916 7.0535 21 1 1.1571 -12.8754 6.8702 22 16 0.1782 -3.0032 1.5761 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3433 -0.0708 27 1 1.5898 1.9163 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5611 -0.3871 2.0629 30 1 3.0797 -0.6609 1.1757 31 1 3.3241 -2.9232 -0.1104 32 1 -1.1356 -5.5804 1.0455 33 1 0.1570 -6.4073 0.1434 34 1 1.3262 -6.6543 2.2597 35 1 -1.4692 -7.5789 2.4010 36 1 -0.1771 -8.4063 1.4989 37 1 1.1111 -8.6860 3.5988 38 1 -0.1808 -7.8587 4.5015 39 1 -1.7886 -9.6156 3.8125 40 1 -0.4973 -10.4435 2.9095 41 1 -2.1247 -13.1440 4.8122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352811473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:40 Heat of formation + Delta-G solvation = 37.910946 kcal Electronic energy + Delta-G solvation = -18831.665837 eV Core-core repulsion = 15872.969530 eV Total energy + Delta-G solvation = -2958.696308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91457 -37.82735 -36.46031 -33.67711 -32.09625 -30.94440 -28.45071 -28.02801 -26.27322 -25.11921 -23.47980 -22.32481 -22.09897 -20.24164 -19.23977 -18.25641 -16.33907 -16.07793 -15.92486 -15.67444 -15.42661 -14.95950 -14.57648 -14.41002 -14.18313 -13.55219 -13.52075 -13.09568 -12.84431 -12.49416 -12.35042 -12.22148 -12.05498 -11.99995 -11.61958 -11.41545 -11.29135 -10.81288 -10.57619 -10.54276 -9.76547 -9.67446 -9.46022 -9.33414 -9.08226 -8.94088 -8.80327 -8.32374 -8.28418 -5.97397 -3.99408 0.52359 1.19465 1.65080 2.68163 3.35664 3.39608 3.42511 3.60122 3.96296 4.42401 4.47680 4.59791 4.63144 4.80179 4.89654 4.91508 5.04728 5.16519 5.21567 5.32169 5.38298 5.41035 5.50470 5.52678 5.56515 5.75934 5.87375 6.04082 6.29873 6.46140 6.51110 6.68772 6.72377 7.13301 7.21824 7.49100 7.64475 7.70269 7.85096 8.02826 8.46039 9.07440 9.64326 11.13993 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.047897 B = 0.002253 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.452679 B =12424.924624 C =12521.969071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.024 3.976 4 C 0.134 3.866 5 C -0.232 4.232 6 C 0.059 3.941 7 N -0.475 5.475 8 C 0.062 3.938 9 C 0.130 3.870 10 N -0.685 5.685 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 S 0.143 5.857 23 H 0.028 0.972 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.345 0.655 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 26.988 -10.316 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.267 5.267 3 C -0.124 4.124 4 C 0.005 3.995 5 C -0.354 4.354 6 C -0.094 4.094 7 N -0.190 5.190 8 C -0.216 4.216 9 C -0.002 4.002 10 N -0.318 5.318 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 S 0.398 5.602 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.190 0.810 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.236 26.783 -10.049 28.918 hybrid contribution 1.261 -0.528 0.465 1.443 sum 5.497 26.255 -9.584 28.485 Atomic orbital electron populations 1.22525 0.87058 1.02896 1.00709 1.62006 1.08445 1.13759 1.42499 1.22397 1.00946 0.88245 1.00780 1.20397 1.00791 0.86444 0.91895 1.25768 0.99877 1.00856 1.08915 1.21625 1.01562 0.86364 0.99813 1.66332 1.09423 1.23821 1.19415 1.26992 0.95343 1.00195 0.99102 1.20487 0.97768 0.88136 0.93804 1.60640 1.11795 1.23931 1.35408 1.22175 0.98357 0.87290 0.99041 1.21628 0.99933 0.98249 0.94680 1.19062 0.95376 0.90209 0.96879 1.21217 1.23249 1.04009 1.07296 0.92718 1.25032 0.95141 0.97445 0.96939 1.69950 1.28322 1.17787 1.37526 0.86646 0.78694 0.78821 0.83764 1.20238 1.21327 1.20274 1.83995 1.20925 1.02747 1.52513 0.95342 0.91047 0.90996 0.91073 0.91031 0.95455 0.93410 0.88635 0.81023 0.88951 0.92062 0.83738 0.91132 0.95238 0.93536 0.92477 0.96517 0.96729 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.07 0.56 0.68 16 2 N -0.54 -4.19 5.01 -252.71 -1.27 -5.46 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.13 1.04 5.50 -4.97 -0.03 1.01 16 5 C -0.23 -2.32 5.30 -35.92 -0.19 -2.51 16 6 C 0.06 0.66 11.25 -19.18 -0.22 0.44 16 7 N -0.48 -6.36 10.54 -11.86 -0.13 -6.48 16 8 C 0.06 0.78 6.90 -13.46 -0.09 0.69 16 9 C 0.13 1.67 6.26 -4.98 -0.03 1.63 16 10 N -0.69 -10.23 6.49 -115.06 -0.75 -10.98 16 11 C 0.06 1.02 5.69 -3.83 -0.02 1.00 16 12 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 S 0.14 1.53 21.84 -107.50 -2.35 -0.82 16 23 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.07 0.61 6.14 -51.93 -0.32 0.29 16 26 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 27 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.34 5.18 8.72 -39.29 -0.34 4.84 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -31.39 353.71 -10.54 -41.93 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.96 Total: -1.97 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.14 Total: -12.00 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -1.40 Total: -49.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.35 Total: -0.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.39 -10.54 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352811473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.837 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds