Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.50698 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.38229 * 119.99013 * 264.73239 * 6 5 4 8 8 C 1.38192 * 120.04740 * 179.72636 * 7 6 5 9 9 C 1.38491 * 120.02563 * 0.54544 * 8 7 6 10 10 F 1.35104 * 120.01190 * 179.74809 * 9 8 7 11 11 C 1.38400 * 119.97761 * 359.72701 * 9 8 7 12 12 C 1.38440 * 119.94377 * 359.97438 * 11 9 8 13 13 F 1.35107 * 120.00775 * 179.97438 * 12 11 9 14 14 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 15 15 C 1.46904 * 110.99949 * 274.99434 * 14 2 1 16 16 C 1.52997 * 109.47280 * 180.02562 * 15 14 2 17 17 C 1.50697 * 109.47196 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00186 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99997 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99626 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47357 * 60.00194 * 21 19 17 23 23 H 1.48506 * 109.46784 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47222 * 299.99835 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 29 29 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 30 30 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 31 31 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 32 32 H 1.07997 * 119.97737 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.98375 * 180.25092 * 8 7 6 34 34 H 1.07995 * 120.02677 * 180.02562 * 11 9 8 35 35 H 1.00900 * 110.99581 * 151.04678 * 14 2 1 36 36 H 1.09002 * 109.47300 * 300.00868 * 15 14 2 37 37 H 1.09006 * 109.46967 * 60.00497 * 15 14 2 38 38 H 1.09008 * 109.47067 * 300.00177 * 16 15 14 39 39 H 1.08997 * 109.46978 * 59.99938 * 16 15 14 40 40 H 0.97008 * 119.99581 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 6 4.4988 -2.6346 -2.4566 8 6 4.9545 -3.2895 -3.5849 9 6 4.9898 -2.6300 -4.8022 10 9 5.4401 -3.2690 -5.9041 11 6 4.5632 -1.3163 -4.8895 12 6 4.1012 -0.6632 -3.7597 13 9 3.6850 0.6194 -3.8434 14 7 2.0196 -0.6925 1.1995 15 6 2.0825 0.2226 2.3469 16 6 2.5961 -0.5328 3.5742 17 6 2.6600 0.4058 4.7515 18 1 2.3643 1.4381 4.6358 19 6 3.0970 -0.0530 5.9761 20 7 3.4576 -1.3099 6.1168 21 14 3.1755 1.1103 7.4355 22 1 1.8187 1.6448 7.7161 23 1 3.6754 0.3773 8.6264 24 1 4.0955 2.2337 7.1241 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1370 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0729 -0.4259 32 1 4.4762 -3.1482 -1.5068 33 1 5.2876 -4.3146 -3.5164 34 1 4.5900 -0.8014 -5.8385 35 1 2.9173 -1.1205 1.0288 36 1 2.7589 1.0462 2.1182 37 1 1.0871 0.6164 2.5526 38 1 1.9199 -1.3567 3.8031 39 1 3.5915 -0.9263 3.3684 40 1 3.7654 -1.6326 6.9783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353672433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -92.046640 kcal Electronic energy + Delta-G solvation = -21321.006134 eV Core-core repulsion = 17770.541304 eV Total energy + Delta-G solvation = -3550.464829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.29722 -49.23838 -39.39189 -37.40804 -34.09183 -32.84834 -31.30156 -31.01115 -28.45579 -28.04738 -24.55099 -23.70687 -23.49420 -21.60335 -20.53066 -20.05850 -18.48844 -17.52391 -16.39710 -16.32780 -16.22577 -15.85271 -15.57635 -15.24577 -14.93276 -14.67932 -14.41932 -14.19426 -13.88748 -13.32985 -12.93097 -12.83214 -12.49137 -12.37540 -12.18888 -11.91329 -11.71055 -11.53735 -11.36239 -11.02067 -10.95716 -10.88466 -10.55120 -10.49728 -9.92672 -9.38731 -9.34079 -9.15129 -8.85305 -8.35086 -7.80163 -5.99857 -4.02270 0.63433 0.68847 3.03804 3.33335 3.37671 3.40115 3.56046 4.10851 4.25967 4.32084 4.43302 4.52195 4.72279 4.79961 5.01685 5.06701 5.18281 5.36121 5.45872 5.48175 5.59149 5.62652 5.69984 5.72954 5.80271 5.83065 5.98802 6.10297 6.17644 6.26174 6.35970 6.43171 6.46344 6.55714 7.00635 7.51186 7.73297 7.83883 7.98227 8.09340 8.44157 9.04838 9.61441 11.11537 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.002856 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.157737 B = 9802.801606 C =10354.960555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.113 4.113 5 C -0.088 4.088 6 C -0.116 4.116 7 C -0.058 4.058 8 C -0.160 4.160 9 C 0.119 3.881 10 F -0.134 7.134 11 C -0.192 4.192 12 C 0.129 3.871 13 F -0.128 7.128 14 N -0.687 5.687 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.522 4.522 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.334 0.666 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.012 0.988 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -2.046 -22.567 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.151 4.151 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.076 4.076 8 C -0.179 4.179 9 C 0.100 3.900 10 F -0.113 7.113 11 C -0.212 4.212 12 C 0.110 3.890 13 F -0.107 7.107 14 N -0.320 5.320 15 C -0.063 4.063 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.911 -2.388 -22.312 22.458 hybrid contribution 0.920 1.277 0.335 1.609 sum 1.832 -1.111 -21.976 22.081 Atomic orbital electron populations 1.21759 0.94874 1.02083 1.00830 1.21505 0.95881 0.95801 0.89703 0.94323 1.21755 0.93223 1.02093 0.98017 1.20689 0.96794 1.00672 0.94335 1.20095 1.01644 0.95388 0.94534 1.20933 0.94938 0.92760 0.98926 1.21244 1.03667 1.01726 0.91225 1.17299 0.98902 0.90466 0.83328 1.91527 1.86603 1.81465 1.51696 1.20999 1.05551 0.94828 0.99775 1.17168 0.98814 0.79574 0.93452 1.91531 1.87531 1.34774 1.96845 1.60696 1.33059 1.34231 1.04047 1.22196 0.99563 0.93506 0.90990 1.19055 0.96123 0.95788 0.90172 1.21151 1.43961 0.96350 0.94642 0.92853 1.24998 0.95413 0.95094 0.98823 1.69961 1.44399 1.14358 1.24569 0.86657 0.78423 0.80899 0.81998 1.20218 1.21268 1.20305 0.93346 0.92187 0.92509 0.90702 0.91594 0.90434 0.89597 0.83404 0.83925 0.83611 0.84703 0.96763 0.92354 0.95690 0.96927 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.42 37.16 0.35 -1.49 16 2 C 0.08 1.13 2.65 -67.71 -0.18 0.95 16 3 H 0.04 0.57 7.80 -51.93 -0.40 0.16 16 4 C -0.11 -1.28 4.79 -26.73 -0.13 -1.41 16 5 C -0.09 -0.94 4.95 -27.88 -0.14 -1.08 16 6 C -0.12 -1.15 5.14 -104.55 -0.54 -1.69 16 7 C -0.06 -0.50 9.67 -39.60 -0.38 -0.88 16 8 C -0.16 -1.31 10.03 -39.51 -0.40 -1.71 16 9 C 0.12 1.10 7.30 -39.43 -0.29 0.81 16 10 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 11 C -0.19 -1.77 10.01 -39.45 -0.39 -2.16 16 12 C 0.13 1.33 7.24 -39.43 -0.29 1.04 16 13 F -0.13 -1.44 16.57 2.25 0.04 -1.40 16 14 N -0.69 -11.74 6.31 -106.72 -0.67 -12.41 16 15 C 0.07 1.37 5.42 -3.82 -0.02 1.34 16 16 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 31 H 0.09 0.93 6.33 -51.93 -0.33 0.60 16 32 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.33 5.37 6.47 -39.29 -0.25 5.12 16 36 H 0.01 0.29 8.06 -51.93 -0.42 -0.12 16 37 H 0.06 1.23 7.44 -51.93 -0.39 0.85 16 38 H 0.02 0.70 8.14 -51.92 -0.42 0.27 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -30.11 341.11 -8.63 -38.74 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.93 Total: -0.06 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.96 Total: -19.29 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.06 Total: -38.51 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.11 -8.63 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353672433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.305 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds