Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46911 * 60.00376 * 9 7 5 11 11 H 1.48502 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47169 * 300.00435 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.38361 * 119.99825 * 85.00022 * 13 3 2 15 15 N 1.32879 * 120.60560 * 0.02562 * 14 13 3 16 16 C 1.31773 * 120.81492 * 179.97438 * 15 14 13 17 17 N 1.31825 * 122.12191 * 0.02562 * 16 15 14 18 18 C 1.32390 * 121.14268 * 359.97438 * 17 16 15 19 19 C 1.39304 * 119.03503 * 359.74102 * 18 17 16 20 20 C 1.48308 * 120.95128 * 180.25394 * 19 18 17 21 21 C 1.39376 * 120.11974 * 129.99492 * 20 19 18 22 22 C 1.38011 * 119.86973 * 179.76480 * 21 20 19 23 23 C 1.38336 * 120.12506 * 0.48764 * 22 21 20 24 24 C 1.38323 * 120.25058 * 359.76701 * 23 22 21 25 25 C 1.38013 * 120.12823 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 33 33 H 1.07999 * 118.93615 * 180.02562 * 16 15 14 34 34 H 1.07995 * 120.48656 * 179.97438 * 18 17 16 35 35 H 1.07995 * 120.06773 * 359.97438 * 21 20 19 36 36 H 1.08002 * 119.93956 * 180.23164 * 22 21 20 37 37 H 1.08001 * 119.87482 * 179.74305 * 23 22 21 38 38 H 1.07992 * 119.93739 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.06575 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2801 1.3809 11 1 6.3978 0.2169 2.6504 12 1 6.5967 0.1455 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.4027 2.6795 -1.3699 15 7 -0.4552 2.6517 -0.3556 16 6 -1.6462 3.2050 -0.4635 17 7 -2.0426 3.8057 -1.5680 18 6 -1.2528 3.8806 -2.6279 19 6 0.0194 3.3167 -2.5643 20 6 0.9410 3.3808 -3.7245 21 6 2.2509 3.8252 -3.5534 22 6 3.1056 3.8782 -4.6357 23 6 2.6614 3.5009 -5.8903 24 6 1.3609 3.0641 -6.0668 25 6 0.4989 3.0019 -4.9908 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0618 2.9495 32 1 2.2719 2.1232 -1.9977 33 1 -2.3193 3.1650 0.3801 34 1 -1.5886 4.3749 -3.5275 35 1 2.5974 4.1242 -2.5752 36 1 4.1220 4.2188 -4.5037 37 1 3.3325 3.5479 -6.7352 38 1 1.0193 2.7712 -7.0486 39 1 -0.5162 2.6604 -5.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358341743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = 58.905151 kcal Electronic energy + Delta-G solvation = -21988.763248 eV Core-core repulsion = 18895.533366 eV Total energy + Delta-G solvation = -3093.229882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91984 -39.74034 -38.23415 -35.21045 -34.38560 -33.37608 -32.16478 -31.70025 -30.09748 -28.60978 -25.56591 -25.14152 -24.01992 -23.23965 -22.45147 -21.57328 -19.51285 -18.25657 -18.02581 -17.92830 -16.78160 -16.45479 -16.25951 -15.89048 -15.62656 -15.26644 -14.74178 -14.59358 -14.35997 -14.32384 -14.18135 -13.65220 -13.48324 -13.17260 -12.89453 -12.73364 -12.55463 -12.31426 -12.12138 -11.98573 -11.89306 -11.56320 -11.40478 -11.07403 -10.84867 -10.53605 -10.00210 -9.83373 -9.59934 -8.61646 -8.17939 -6.34650 -0.11814 0.50391 0.57687 0.69461 1.41623 1.42389 1.50276 2.30632 2.52970 2.86946 3.09673 3.12502 3.47117 3.56969 3.71110 3.99606 4.10988 4.16172 4.31993 4.50950 4.52941 4.57882 4.62551 4.71629 4.75709 4.81944 5.05420 5.07613 5.17169 5.26430 5.43770 5.46280 5.55672 5.58715 5.63308 5.66132 5.77915 5.82052 5.96093 6.09801 6.17716 6.45783 6.71421 6.93343 7.34649 7.53342 8.86458 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.006401 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.764873 B = 4373.521037 C = 5858.952382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.287 3.713 4 H 0.018 0.982 5 C -0.554 4.554 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.683 5.683 14 C 0.436 3.564 15 N -0.588 5.588 16 C 0.323 3.677 17 N -0.581 5.581 18 C 0.187 3.813 19 C -0.243 4.243 20 C -0.034 4.034 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.115 4.115 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.405 0.595 33 H 0.212 0.788 34 H 0.189 0.811 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 5.416 -14.622 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.184 3.816 4 H 0.036 0.964 5 C -0.592 4.592 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.311 5.311 14 C 0.190 3.810 15 N -0.313 5.313 16 C 0.034 3.966 17 N -0.300 5.300 18 C 0.024 3.976 19 C -0.255 4.255 20 C -0.036 4.036 21 C -0.155 4.155 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.133 4.133 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.228 0.772 34 H 0.206 0.794 35 H 0.121 0.879 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.189 5.157 -13.461 15.321 hybrid contribution 1.784 -0.125 -0.137 1.794 sum -3.405 5.032 -13.598 14.894 Atomic orbital electron populations 1.21624 0.96404 0.98700 1.00522 1.21786 0.94362 0.99232 1.00563 1.18430 0.93135 0.89103 0.80974 0.96432 1.21508 0.91855 1.39314 1.06569 0.92169 1.25626 1.02844 0.94297 0.94980 1.70003 1.36881 1.37988 1.09728 0.85546 0.79693 0.78404 0.77608 1.19804 1.20762 1.19353 1.45355 1.11726 1.56324 1.17715 1.18954 0.86769 0.86530 0.88728 1.68260 1.05867 1.25844 1.31281 1.25145 0.89621 0.86317 0.95509 1.68408 1.37140 1.22857 1.01643 1.23343 0.87057 0.90360 0.96826 1.19921 0.99161 1.11241 0.95128 1.18464 0.92791 0.99966 0.92352 1.21301 0.93829 1.01100 0.99270 1.21322 0.99972 0.99665 0.92797 1.21537 0.96630 0.98521 0.97362 1.21434 0.93587 0.98675 0.99453 1.21405 1.00898 0.99698 0.91287 0.94389 0.93432 0.94777 0.90770 0.95709 0.92487 0.75747 0.77173 0.79410 0.87893 0.84660 0.83352 0.83004 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.45 71.98 0.61 -4.35 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.29 14.48 2.25 44.25 0.10 14.58 16 4 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 5 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 6 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -50.95 11.29 21.44 0.24 -50.71 16 9 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.68 -29.37 4.76 -326.93 -1.56 -30.93 16 14 C 0.44 17.20 5.99 133.52 0.80 18.00 16 15 N -0.59 -23.33 6.60 -196.92 -1.30 -24.63 16 16 C 0.32 10.66 12.27 180.88 2.22 12.88 16 17 N -0.58 -18.06 10.42 -199.44 -2.08 -20.14 16 18 C 0.19 5.34 10.83 84.87 0.92 6.26 16 19 C -0.24 -7.91 5.51 -19.74 -0.11 -8.02 16 20 C -0.03 -0.98 5.13 -20.05 -0.10 -1.08 16 21 C -0.14 -3.97 7.83 22.49 0.18 -3.80 16 22 C -0.12 -2.82 10.03 22.24 0.22 -2.60 16 23 C -0.12 -2.36 10.04 22.31 0.22 -2.13 16 24 C -0.11 -2.13 10.03 22.24 0.22 -1.91 16 25 C -0.11 -2.61 9.55 22.49 0.21 -2.40 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 2.11 7.69 -2.39 -0.02 2.09 16 28 H 0.03 1.43 5.59 -2.39 -0.01 1.42 16 29 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.40 16.52 5.87 -92.71 -0.54 15.97 16 33 H 0.21 5.52 8.06 -2.91 -0.02 5.50 16 34 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.10 3.40 7.58 -2.91 -0.02 3.38 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 2.62 8.05 -2.91 -0.02 2.60 16 Total: -1.00 -61.93 322.23 4.19 -57.75 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.52 Total: 32.42 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 6.33 Total: -7.95 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -4.69 Total: -126.41 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -61.93 4.19 -57.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358341743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.651 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds