Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53002 * 109.46890 * 120.00026 * 2 1 3 5 5 H 1.09002 * 109.47231 * 185.50698 * 4 2 1 6 6 N 1.46898 * 109.47395 * 65.50183 * 4 2 1 7 7 C 1.46903 * 110.99645 * 81.72334 * 6 4 2 8 8 C 1.53005 * 109.46902 * 175.70364 * 7 6 4 9 9 C 1.50705 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99862 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99969 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00121 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47003 * 90.00174 * 13 11 9 15 15 H 1.48499 * 109.47310 * 210.00369 * 13 11 9 16 16 H 1.48500 * 109.47236 * 330.00265 * 13 11 9 17 17 C 1.50706 * 109.47173 * 305.50512 * 4 2 1 18 18 C 1.38200 * 119.99878 * 100.00054 * 17 4 2 19 19 C 1.38432 * 119.99760 * 179.97438 * 18 17 4 20 20 F 1.35095 * 120.00320 * 180.02562 * 19 18 17 21 21 C 1.38471 * 119.99931 * 359.97438 * 19 18 17 22 22 C 1.38164 * 120.00370 * 0.02562 * 21 19 18 23 23 C 1.38433 * 119.99739 * 280.23778 * 17 4 2 24 24 F 1.35100 * 120.00301 * 0.06270 * 23 17 4 25 25 H 1.08998 * 109.46978 * 300.00165 * 1 2 3 26 26 H 1.08998 * 109.46734 * 60.00169 * 1 2 3 27 27 H 1.08992 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46978 * 239.99835 * 2 1 3 29 29 H 1.08997 * 109.46848 * 172.89813 * 3 2 1 30 30 H 1.09002 * 109.46945 * 292.89506 * 3 2 1 31 31 H 1.08997 * 109.47132 * 52.90024 * 3 2 1 32 32 H 1.00896 * 111.00306 * 205.67803 * 6 4 2 33 33 H 1.09002 * 109.47509 * 295.70197 * 7 6 4 34 34 H 1.09000 * 109.46911 * 55.70437 * 7 6 4 35 35 H 1.08995 * 109.46973 * 299.99776 * 8 7 6 36 36 H 1.08987 * 109.47214 * 60.00023 * 8 7 6 37 37 H 0.96994 * 120.00268 * 179.97438 * 12 11 9 38 38 H 1.07994 * 120.00283 * 0.02562 * 18 17 4 39 39 H 1.08001 * 120.00396 * 180.02562 * 21 19 18 40 40 H 1.07994 * 120.00255 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 3.1256 -0.6367 1.3000 6 7 1.6618 -2.1393 1.1848 7 6 2.6029 -2.8976 0.3497 8 6 2.2401 -4.3834 0.3930 9 6 3.2059 -5.1614 -0.4632 10 1 3.9994 -4.6476 -0.9855 11 6 3.0772 -6.5293 -0.5788 12 7 2.1113 -7.1550 0.0577 13 14 4.2739 -7.4936 -1.6405 14 1 5.4327 -7.9218 -0.8164 15 1 3.5910 -8.6904 -2.1941 16 1 4.7495 -6.6352 -2.7551 17 6 1.4295 -0.0939 2.4760 18 6 0.3481 -0.6935 3.0933 19 6 -0.2124 -0.1175 4.2204 20 9 -1.2691 -0.7038 4.8242 21 6 0.3108 1.0591 4.7296 22 6 1.3918 1.6586 4.1124 23 6 1.9487 1.0856 2.9815 24 9 3.0020 1.6749 2.3745 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1226 1.4451 0.1271 30 1 1.7843 1.9183 -0.9467 31 1 1.5768 1.9917 0.8196 32 1 1.5959 -2.5384 2.1091 33 1 2.5465 -2.5396 -0.6783 34 1 3.6161 -2.7598 0.7274 35 1 2.2966 -4.7414 1.4209 36 1 1.2270 -4.5211 0.0154 37 1 2.0205 -8.1172 -0.0239 38 1 -0.0591 -1.6118 2.6969 39 1 -0.1262 1.5084 5.6092 40 1 1.7996 2.5765 4.5093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358984869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -79.294118 kcal Electronic energy + Delta-G solvation = -22521.571182 eV Core-core repulsion = 18971.659343 eV Total energy + Delta-G solvation = -3549.911838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.09854 -48.99889 -39.67146 -37.08261 -34.26289 -32.62214 -31.45370 -30.13400 -28.94550 -27.00343 -25.61976 -23.86856 -22.62129 -22.53508 -20.63039 -19.31640 -17.75679 -17.23841 -17.15453 -16.39026 -16.23346 -15.53970 -15.34917 -14.75112 -14.57638 -14.46903 -14.38563 -14.09056 -13.50922 -13.33106 -13.19365 -12.72951 -12.51919 -12.28107 -12.06705 -11.78599 -11.70115 -11.32802 -11.21962 -10.97109 -10.85848 -10.72173 -10.51683 -10.41140 -10.00702 -9.43729 -9.21018 -9.15765 -8.63993 -8.37177 -7.94521 -6.01405 -4.04058 0.79798 0.88465 3.20875 3.31333 3.37759 3.40969 4.01404 4.02819 4.32939 4.38069 4.48204 4.69772 4.83107 4.97463 5.12205 5.17589 5.34899 5.43503 5.52651 5.62964 5.74246 5.78696 5.86149 5.88716 5.90733 6.02486 6.04718 6.17505 6.23008 6.31515 6.38802 6.48289 6.61599 6.65721 6.94111 7.38349 7.67486 7.76018 7.87360 8.03858 8.40736 9.02895 9.60024 11.09989 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.004049 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.722783 B = 6913.579874 C = 7622.936254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.151 4.151 4 C 0.129 3.871 5 H 0.056 0.944 6 N -0.683 5.683 7 C 0.066 3.934 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.076 4.076 18 C -0.112 4.112 19 C 0.090 3.910 20 F -0.135 7.135 21 C -0.134 4.134 22 C -0.128 4.128 23 C 0.091 3.909 24 F -0.131 7.131 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.339 0.661 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 19.362 7.511 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.208 4.208 4 C 0.018 3.982 5 H 0.073 0.927 6 N -0.315 5.315 7 C -0.062 4.062 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.078 4.078 18 C -0.131 4.131 19 C 0.070 3.930 20 F -0.114 7.114 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.071 3.929 24 F -0.110 7.110 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.900 19.263 7.019 20.870 hybrid contribution 1.426 -0.647 0.094 1.569 sum -2.473 18.616 7.113 20.082 Atomic orbital electron populations 1.21760 0.94600 1.02895 1.00320 1.21057 0.96824 0.94849 0.97106 1.22089 1.01196 0.96196 1.01364 1.20494 0.96898 0.90024 0.90748 0.92666 1.60749 1.52617 0.99882 1.18256 1.22232 0.91340 0.96681 0.95939 1.19080 0.97598 0.87458 0.97116 1.21153 1.13696 0.92173 1.29030 0.92754 1.24988 0.95568 0.97873 0.95845 1.69965 1.31558 1.08993 1.42699 0.86594 0.81079 0.79616 0.80706 1.20715 1.21185 1.19867 1.19916 0.96247 0.94156 0.97448 1.21110 0.95830 1.01994 0.94183 1.17697 0.87539 0.93688 0.94056 1.91522 1.53954 1.83532 1.82391 1.20938 0.97502 0.95212 1.01674 1.20906 0.97146 1.01445 0.95186 1.17477 0.87954 0.93538 0.93950 1.91512 1.54293 1.83052 1.82111 0.93565 0.93605 0.90885 0.90163 0.92397 0.92908 0.92880 0.84245 0.92013 0.96438 0.96853 0.95548 0.92974 0.82281 0.84040 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.52 37.16 0.32 -1.48 16 2 C -0.08 -1.07 2.80 -90.61 -0.25 -1.32 16 3 C -0.15 -1.77 7.56 37.16 0.28 -1.49 16 4 C 0.13 1.83 1.88 -68.86 -0.13 1.71 16 5 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 6 N -0.68 -11.39 5.02 -107.94 -0.54 -11.93 16 7 C 0.07 1.34 5.45 -3.82 -0.02 1.31 16 8 C 0.02 0.63 5.19 -27.88 -0.14 0.49 16 9 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 C -0.08 -0.96 3.73 -104.56 -0.39 -1.35 16 18 C -0.11 -1.39 7.90 -39.52 -0.31 -1.70 16 19 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 21 C -0.13 -1.26 10.02 -39.52 -0.40 -1.66 16 22 C -0.13 -1.20 10.02 -39.52 -0.40 -1.60 16 23 C 0.09 1.05 5.92 -39.42 -0.23 0.82 16 24 F -0.13 -1.59 13.55 2.25 0.03 -1.56 16 25 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 28 H 0.08 1.18 7.20 -51.93 -0.37 0.81 16 29 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.61 5.82 -51.93 -0.30 0.31 16 32 H 0.34 5.56 7.13 -39.29 -0.28 5.28 16 33 H 0.06 1.26 7.25 -51.93 -0.38 0.88 16 34 H 0.02 0.36 7.96 -51.93 -0.41 -0.06 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.72 8.14 -51.94 -0.42 0.30 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.16 2.08 6.77 -52.49 -0.36 1.72 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -29.17 326.98 -7.91 -37.08 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.70 Total: 1.44 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.38 Total: -18.91 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.19 Total: -37.91 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.17 -7.91 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358984869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.219 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds