Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47196 * 2 1 4 4 C 1.52997 * 109.47037 * 119.99786 * 2 1 3 5 5 H 1.09000 * 109.47469 * 54.06078 * 4 2 1 6 6 N 1.46899 * 109.47264 * 174.06318 * 4 2 1 7 7 C 1.46901 * 110.99950 * 274.94177 * 6 4 2 8 8 C 1.52998 * 109.47099 * 184.98261 * 7 6 4 9 9 C 1.50696 * 109.47126 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00223 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00204 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00099 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00283 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46980 * 60.00746 * 13 11 9 15 15 H 1.48504 * 109.47242 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47280 * 300.00450 * 13 11 9 17 17 C 1.50707 * 109.47258 * 294.06075 * 4 2 1 18 18 C 1.38197 * 120.00080 * 264.72500 * 17 4 2 19 19 C 1.38431 * 120.00045 * 179.76787 * 18 17 4 20 20 F 1.35098 * 120.00279 * 180.27297 * 19 18 17 21 21 C 1.38473 * 119.99921 * 0.53038 * 19 18 17 22 22 C 1.38170 * 119.99644 * 359.72023 * 21 19 18 23 23 C 1.38433 * 119.99681 * 84.99985 * 17 4 2 24 24 F 1.35098 * 120.00078 * 359.97438 * 23 17 4 25 25 H 1.09006 * 109.46899 * 306.79971 * 1 2 3 26 26 H 1.08998 * 109.47278 * 66.79889 * 1 2 3 27 27 H 1.08997 * 109.47502 * 186.79779 * 1 2 3 28 28 H 1.08996 * 109.46779 * 239.99592 * 2 1 3 29 29 H 1.08997 * 109.47372 * 60.91001 * 3 2 1 30 30 H 1.08999 * 109.47354 * 180.91562 * 3 2 1 31 31 H 1.09007 * 109.46799 * 300.91082 * 3 2 1 32 32 H 1.00898 * 110.99969 * 38.89417 * 6 4 2 33 33 H 1.09008 * 109.46552 * 304.97723 * 7 6 4 34 34 H 1.08998 * 109.47466 * 64.97434 * 7 6 4 35 35 H 1.09009 * 109.46897 * 299.99744 * 8 7 6 36 36 H 1.08998 * 109.47637 * 59.99278 * 8 7 6 37 37 H 0.96993 * 120.00193 * 179.97438 * 12 11 9 38 38 H 1.08001 * 119.99990 * 0.02562 * 18 17 4 39 39 H 1.07994 * 120.00474 * 179.70171 * 21 19 18 40 40 H 1.07999 * 119.99530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5924 -1.7136 1.3041 6 7 3.5019 -0.8465 1.1798 7 6 3.8924 -2.0365 0.4120 8 6 5.4125 -2.2022 0.4661 9 6 5.8130 -3.4232 -0.3210 10 1 5.0588 -4.0215 -0.8106 11 6 7.1423 -3.7767 -0.4162 12 7 8.0607 -3.0485 0.1803 13 14 7.6387 -5.2906 -1.3914 14 1 7.2075 -5.1331 -2.8037 15 1 9.1141 -5.4514 -1.3389 16 1 6.9893 -6.4911 -0.8064 17 6 1.6612 0.0691 2.4754 18 6 2.5623 0.9581 3.0300 19 6 2.2126 1.6876 4.1534 20 9 3.0914 2.5608 4.6923 21 6 0.9641 1.5183 4.7279 22 6 0.0652 0.6256 4.1764 23 6 0.4129 -0.0998 3.0493 24 9 -0.4660 -0.9727 2.5101 25 1 -0.3633 0.6156 0.8229 26 1 -0.3634 0.4048 -0.9445 27 1 -0.3634 -1.0204 0.1216 28 1 1.8932 -0.5139 -0.8899 29 1 1.6901 1.9516 0.8980 30 1 3.1299 1.4426 -0.0164 31 1 1.6633 1.9610 -0.8818 32 1 3.9183 -0.0133 0.7920 33 1 3.4153 -2.9180 0.8405 34 1 3.5763 -1.9199 -0.6246 35 1 5.8895 -1.3206 0.0377 36 1 5.7286 -2.3187 1.5027 37 1 8.9958 -3.2973 0.1137 38 1 3.5376 1.0869 2.5845 39 1 0.6931 2.0838 5.6071 40 1 -0.9084 0.4933 4.6247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358984882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -82.365411 kcal Electronic energy + Delta-G solvation = -22505.102603 eV Core-core repulsion = 18955.057583 eV Total energy + Delta-G solvation = -3550.045019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.99277 -48.93013 -39.66834 -37.25212 -34.19155 -32.51751 -31.41117 -30.08493 -28.97349 -27.28356 -25.61890 -23.81630 -22.60226 -22.37521 -20.58963 -19.67220 -17.67576 -17.17242 -17.13519 -16.33439 -16.27309 -15.51266 -15.20616 -14.88298 -14.50961 -14.45824 -14.30446 -14.01829 -13.73698 -13.25130 -13.16067 -12.75449 -12.54021 -12.28597 -12.08322 -11.89268 -11.76949 -11.34868 -11.32414 -11.08244 -10.91624 -10.79425 -10.65758 -10.51893 -10.02579 -9.45160 -9.19375 -9.07023 -8.56915 -8.35712 -7.91628 -6.00311 -4.03127 0.88981 0.99286 3.30055 3.33107 3.37695 3.39844 4.09869 4.10986 4.34629 4.46925 4.51162 4.79792 4.83780 4.89322 4.99037 5.11759 5.20063 5.35728 5.52033 5.60122 5.61651 5.73615 5.80671 5.82977 5.91052 5.99178 6.00095 6.07237 6.16032 6.20737 6.28480 6.31803 6.41449 6.73792 6.94163 7.38519 7.68012 7.75400 7.89791 8.05997 8.41646 9.03846 9.60755 11.11026 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.004042 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.185534 B = 6926.283714 C = 7559.660983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.151 4.151 4 C 0.126 3.874 5 H 0.092 0.908 6 N -0.683 5.683 7 C 0.067 3.933 8 C 0.027 3.973 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.059 4.059 18 C -0.100 4.100 19 C 0.086 3.914 20 F -0.137 7.137 21 C -0.136 4.136 22 C -0.129 4.129 23 C 0.088 3.912 24 F -0.134 7.134 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.338 0.662 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 10.844 5.588 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.208 4.208 4 C 0.015 3.985 5 H 0.110 0.890 6 N -0.314 5.314 7 C -0.061 4.061 8 C -0.010 4.010 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.061 4.061 18 C -0.119 4.119 19 C 0.066 3.934 20 F -0.116 7.116 21 C -0.155 4.155 22 C -0.148 4.148 23 C 0.068 3.932 24 F -0.112 7.112 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.889 10.523 6.222 20.849 hybrid contribution 0.180 -0.569 -1.359 1.484 sum -16.709 9.954 4.863 20.048 Atomic orbital electron populations 1.21910 0.94820 1.02114 1.01398 1.21780 0.96584 0.97081 0.98734 1.21919 1.01291 0.95721 1.01885 1.20506 0.90695 0.97725 0.89577 0.88981 1.60732 1.05035 1.07424 1.58197 1.22217 1.00507 0.90063 0.93332 1.19043 0.87565 0.96582 0.97844 1.21124 0.92235 1.10664 1.32151 0.92829 1.24989 0.96694 0.96829 0.95737 1.69959 1.00862 1.38847 1.43525 0.86656 0.77347 0.83448 0.80523 1.20296 1.21264 1.20229 1.19773 0.91606 0.97124 0.97612 1.20953 1.01095 0.95072 0.94783 1.17715 0.88279 0.92343 0.95025 1.91512 1.68006 1.66828 1.85250 1.20899 0.92475 1.00580 1.01556 1.20871 1.01011 0.97270 0.95682 1.17479 0.88161 0.92699 0.94869 1.91495 1.67568 1.66964 1.85212 0.92809 0.92928 0.92199 0.90179 0.92400 0.92246 0.92562 0.84213 0.92229 0.96267 0.96801 0.95631 0.92922 0.83112 0.84181 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.70 37.16 0.29 -1.31 16 2 C -0.12 -1.50 2.78 -90.62 -0.25 -1.75 16 3 C -0.15 -1.70 8.35 37.16 0.31 -1.39 16 4 C 0.13 1.77 1.90 -68.86 -0.13 1.64 16 5 H 0.09 1.39 7.36 -51.93 -0.38 1.01 16 6 N -0.68 -11.47 5.22 -107.95 -0.56 -12.03 16 7 C 0.07 1.35 5.44 -3.82 -0.02 1.33 16 8 C 0.03 0.69 5.27 -27.89 -0.15 0.55 16 9 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C -0.06 -0.77 3.85 -104.56 -0.40 -1.17 16 18 C -0.10 -1.29 7.88 -39.53 -0.31 -1.60 16 19 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 20 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 21 C -0.14 -1.35 10.02 -39.52 -0.40 -1.74 16 22 C -0.13 -1.28 10.02 -39.52 -0.40 -1.67 16 23 C 0.09 1.05 5.95 -39.43 -0.23 0.81 16 24 F -0.13 -1.65 14.25 2.25 0.03 -1.62 16 25 H 0.05 0.59 6.22 -51.93 -0.32 0.26 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.68 7.54 -51.93 -0.39 0.28 16 28 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 30 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.34 5.39 6.12 -39.29 -0.24 5.15 16 33 H 0.06 1.23 7.93 -51.92 -0.41 0.82 16 34 H 0.02 0.38 7.47 -51.93 -0.39 -0.01 16 35 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.15 2.01 6.89 -52.49 -0.36 1.65 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -29.54 326.41 -7.88 -37.42 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.63 Total: 1.51 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.39 Total: -19.00 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.17 Total: -38.10 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.54 -7.88 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358984882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.948 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds