Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.20650 * 2 1 4 4 C 1.54391 * 110.23630 * 238.10439 * 2 1 3 5 5 C 1.54541 * 101.76855 * 266.69723 * 4 2 1 6 6 H 1.09000 * 110.47644 * 93.65136 * 5 4 2 7 7 N 1.46505 * 110.47342 * 216.13467 * 5 4 2 8 8 C 1.38858 * 119.99897 * 204.99971 * 7 5 4 9 9 C 1.39564 * 119.84182 * 179.97438 * 8 7 5 10 10 C 1.36337 * 120.16033 * 180.25025 * 9 8 7 11 11 C 1.40884 * 119.83783 * 359.48798 * 10 9 8 12 12 C 1.41137 * 120.15887 * 180.27074 * 11 10 9 13 13 H 1.08002 * 120.00186 * 24.85776 * 12 11 10 14 14 C 1.39867 * 119.99833 * 204.85906 * 12 11 10 15 15 N 1.30900 * 120.00078 * 17.95866 * 14 12 11 16 16 Si 1.86807 * 119.99706 * 197.96311 * 14 12 11 17 17 H 1.48499 * 109.47332 * 59.99739 * 16 14 12 18 18 H 1.48494 * 109.47052 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46789 * 299.99866 * 16 14 12 20 20 C 1.40888 * 119.68931 * 0.50990 * 11 10 9 21 21 C 1.36345 * 119.83372 * 359.74111 * 20 11 10 22 22 C 1.51564 * 104.24170 * 334.82205 * 5 4 2 23 23 N 1.30901 * 141.44249 * 196.54033 * 22 5 4 24 24 C 1.34010 * 109.30271 * 179.81750 * 23 22 5 25 25 C 1.34557 * 108.02676 * 0.10672 * 24 23 22 26 26 N 1.34805 * 109.94453 * 16.57436 * 22 5 4 27 27 H 1.09002 * 109.46745 * 181.90233 * 1 2 3 28 28 H 1.09004 * 109.46676 * 301.89493 * 1 2 3 29 29 H 1.08994 * 109.47429 * 61.89472 * 1 2 3 30 30 H 1.08997 * 110.97603 * 148.57500 * 4 2 1 31 31 H 1.09003 * 110.99860 * 24.82495 * 4 2 1 32 32 H 0.96995 * 119.99951 * 24.99808 * 7 5 4 33 33 H 1.08001 * 119.92310 * 359.97438 * 9 8 7 34 34 H 1.08005 * 120.08629 * 179.70550 * 10 9 8 35 35 H 0.96998 * 119.99905 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.08577 * 179.75937 * 20 11 10 37 37 H 1.07997 * 119.91847 * 180.02562 * 21 20 11 38 38 H 1.08001 * 125.98313 * 180.02562 * 24 23 22 39 39 H 1.08001 * 126.58158 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0640 -0.7654 -1.2299 5 6 2.2548 -2.1881 -0.6573 6 1 1.3686 -2.7954 -0.8417 7 7 3.4393 -2.8213 -1.2424 8 6 3.5290 -4.2058 -1.3009 9 6 4.6587 -4.8055 -1.8594 10 6 4.7513 -6.1642 -1.9249 11 6 3.7078 -6.9631 -1.4172 12 6 3.7992 -8.3703 -1.4762 13 1 4.7671 -8.8473 -1.5207 14 6 2.6361 -9.1471 -1.4772 15 7 1.4844 -8.6009 -1.7751 16 14 2.7262 -10.9642 -1.0532 17 1 3.2644 -11.1257 0.3213 18 1 1.3669 -11.5575 -1.1260 19 1 3.6192 -11.6540 -2.0187 20 6 2.5704 -6.3508 -0.8548 21 6 2.4891 -4.9908 -0.8006 22 6 2.4507 -1.9685 0.8295 23 7 2.8863 -2.5742 1.9050 24 6 2.7717 -1.7495 2.9551 25 6 2.2445 -0.5909 2.5189 26 7 2.0385 -0.7309 1.1698 27 1 -0.3633 -1.0271 0.0341 28 1 -0.3633 0.5430 0.8726 29 1 -0.3634 0.4841 -0.9064 30 1 3.0138 -0.3496 -1.5660 31 1 1.3325 -0.7651 -2.0380 32 1 4.1609 -2.2735 -1.5888 33 1 5.4595 -4.1919 -2.2448 34 1 5.6239 -6.6270 -2.3616 35 1 0.6777 -9.1396 -1.7754 36 1 1.7650 -6.9571 -0.4672 37 1 1.6181 -4.5200 -0.3694 38 1 3.0522 -1.9757 3.9732 39 1 2.0253 0.2817 3.1163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381061981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = 104.003706 kcal Electronic energy + Delta-G solvation = -21539.252755 eV Core-core repulsion = 18447.978494 eV Total energy + Delta-G solvation = -3091.274262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33875 -38.06669 -36.93882 -34.71652 -32.93681 -30.71962 -30.08646 -29.36541 -28.46814 -27.52344 -24.95347 -23.89251 -22.05613 -21.19064 -20.53146 -20.11449 -19.24064 -17.13748 -16.74862 -16.44360 -15.62952 -14.90168 -14.69808 -14.41407 -14.04156 -13.91748 -13.68569 -13.41709 -13.04554 -12.69167 -12.58957 -12.34522 -12.25628 -11.86026 -11.73247 -11.62915 -11.14357 -11.02684 -10.94283 -10.77200 -10.42832 -9.64064 -9.53531 -9.43916 -9.22934 -9.17825 -8.57516 -8.18635 -7.37443 -6.58356 -6.35482 -3.96590 2.18701 2.73212 2.99928 3.19018 3.21875 3.23454 3.39252 3.43993 3.84810 4.11829 4.22996 4.45970 4.47004 4.62158 4.82695 4.90286 5.04655 5.20602 5.27151 5.33703 5.53939 5.69523 5.70939 5.80041 5.85028 5.94481 6.34978 6.41926 6.47425 6.94766 7.02118 7.03904 7.21206 7.28091 7.43079 7.60475 7.77700 7.91386 8.23989 8.33318 8.44949 8.53981 8.71191 8.86211 9.14076 9.23302 10.44422 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.003963 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.201566 B = 7063.781110 C = 7249.331675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.094 0.906 4 C -0.133 4.133 5 C 0.242 3.758 6 H 0.105 0.895 7 N -0.740 5.740 8 C 0.091 3.909 9 C -0.152 4.152 10 C -0.190 4.190 11 C 0.079 3.921 12 C -0.467 4.467 13 H 0.072 0.928 14 C 0.076 3.924 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.124 4.124 21 C -0.146 4.146 22 C 0.186 3.814 23 N -0.461 5.461 24 C -0.025 4.025 25 C -0.051 4.051 26 N -0.483 5.483 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.386 0.614 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 17.562 2.468 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.112 0.888 4 C -0.172 4.172 5 C 0.131 3.869 6 H 0.122 0.878 7 N -0.374 5.374 8 C -0.005 4.005 9 C -0.174 4.174 10 C -0.211 4.211 11 C 0.076 3.924 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.139 4.139 15 N -0.435 5.435 16 Si 0.727 3.273 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.144 4.144 21 C -0.168 4.168 22 C -0.080 4.080 23 N -0.178 5.178 24 C -0.174 4.174 25 C -0.182 4.182 26 N -0.168 5.168 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.220 0.780 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.186 0.814 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.569 16.877 2.533 17.435 hybrid contribution -0.074 0.326 0.383 0.508 sum -3.643 17.202 2.916 17.824 Atomic orbital electron populations 1.22179 0.93007 1.03735 1.03068 1.21914 0.95423 0.96676 0.82973 0.88828 1.23094 1.03371 0.94159 0.96545 1.19597 0.92304 0.92848 0.82146 0.87764 1.43695 1.19959 1.03886 1.69825 1.17242 0.96379 0.81422 1.05478 1.19751 0.96400 0.94891 1.06393 1.20508 1.01024 0.92378 1.07154 1.17484 0.91312 0.93159 0.90453 1.19344 0.93158 0.91356 1.45997 0.91010 1.25777 0.95001 1.00486 0.92642 1.69847 0.99683 1.38065 1.35952 0.86483 0.77875 0.82782 0.80147 1.19066 1.20625 1.19312 1.20912 1.00005 0.92359 1.01147 1.20017 0.97154 0.94334 1.05285 1.25468 1.01038 0.83334 0.98143 1.70023 1.19695 1.31254 0.96844 1.22390 1.05699 0.90619 0.98718 1.22245 1.11049 1.02445 0.82487 1.46614 1.47310 1.15919 1.06968 0.91234 0.91896 0.90202 0.89161 0.87589 0.78022 0.89709 0.89123 0.91346 0.86476 0.89661 0.81355 0.81718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.46 37.16 0.35 -0.89 16 2 C 0.13 1.22 4.14 -66.92 -0.28 0.94 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -1.27 6.38 -25.19 -0.16 -1.43 16 5 C 0.24 3.62 2.97 -67.85 -0.20 3.42 16 6 H 0.10 1.67 6.37 -51.93 -0.33 1.34 16 7 N -0.74 -12.90 5.28 -51.95 -0.27 -13.17 16 8 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 9 C -0.15 -3.51 9.82 -39.77 -0.39 -3.90 16 10 C -0.19 -4.86 9.74 -39.27 -0.38 -5.24 16 11 C 0.08 2.19 5.57 -106.79 -0.60 1.60 16 12 C -0.47 -13.06 9.03 -37.87 -0.34 -13.41 16 13 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 14 C 0.08 2.01 5.13 -17.34 -0.09 1.92 16 15 N -0.81 -21.89 10.96 55.54 0.61 -21.28 16 16 Si 0.90 19.76 29.60 -169.99 -5.03 14.72 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.12 -3.39 8.64 -39.26 -0.34 -3.72 16 21 C -0.15 -3.57 9.14 -39.77 -0.36 -3.93 16 22 C 0.19 3.13 8.22 -154.87 -1.27 1.86 16 23 N -0.46 -9.00 11.26 -10.57 -0.12 -9.12 16 24 C -0.03 -0.39 11.86 -17.90 -0.21 -0.61 16 25 C -0.05 -0.65 12.04 -16.45 -0.20 -0.85 16 26 N -0.48 -6.37 3.25 -105.27 -0.34 -6.71 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.78 7.82 -51.93 -0.41 0.37 16 31 H 0.11 0.78 7.90 -51.93 -0.41 0.37 16 32 H 0.39 5.92 8.42 -40.82 -0.34 5.58 16 33 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 35 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 36 H 0.12 3.32 6.16 -52.49 -0.32 3.00 16 37 H 0.09 1.96 6.17 -52.49 -0.32 1.63 16 38 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 39 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -32.73 324.30 -10.37 -43.10 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.07 Total: 10.35 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -5.03 Total: -22.78 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.13 Total: -50.28 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.73 -10.37 -43.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381061981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.100 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds