Wall clock time and date at job start Tue Mar 31 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 N 1.28434 * 120.47772 * 254.72821 * 5 2 1 7 7 C 1.34737 * 116.90565 * 179.76389 * 6 5 2 8 8 N 1.31755 * 127.89467 * 180.17361 * 7 6 5 9 9 C 1.46502 * 119.99616 * 180.30779 * 8 7 6 10 10 C 1.52999 * 109.47254 * 119.99975 * 9 8 7 11 11 C 1.53005 * 109.46994 * 299.99482 * 10 9 8 12 12 C 1.52994 * 109.47567 * 59.99331 * 10 9 8 13 13 C 1.50701 * 109.47407 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99599 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00249 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00069 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00123 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46818 * 60.00000 * 17 15 13 19 19 H 1.48499 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47144 * 300.00312 * 17 15 13 21 21 S 1.77485 * 104.20666 * 0.43875 * 7 6 5 22 22 N 1.33796 * 120.46766 * 75.00558 * 5 2 1 23 23 H 0.96996 * 127.11919 * 359.97350 * 22 5 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.08998 * 109.46932 * 239.99442 * 9 8 7 34 34 H 1.08998 * 109.47412 * 359.97438 * 9 8 7 35 35 H 1.09000 * 109.47014 * 60.00034 * 11 10 9 36 36 H 1.08997 * 109.47291 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47445 * 300.00445 * 11 10 9 38 38 H 1.09006 * 109.46886 * 60.00679 * 12 10 9 39 39 H 1.08999 * 109.47508 * 179.97438 * 12 10 9 40 40 H 1.08993 * 109.47398 * 300.00597 * 12 10 9 41 41 H 0.96994 * 120.00094 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 2.5244 -1.8937 -1.1442 7 6 2.9473 -2.4632 -2.2897 8 7 3.4795 -3.6575 -2.4513 9 6 3.8874 -4.1032 -3.7860 10 6 5.3873 -4.4051 -3.7867 11 6 6.1623 -3.1400 -3.4126 12 6 5.6864 -5.5064 -2.7677 13 6 5.8069 -4.8629 -5.1598 14 1 5.0767 -4.9320 -5.9525 15 6 7.1230 -5.1935 -5.4040 16 7 8.0121 -5.1097 -4.4385 17 14 7.6430 -5.7616 -7.1058 18 1 7.3521 -4.6927 -8.0948 19 1 9.0991 -6.0533 -7.1069 20 1 6.8913 -6.9898 -7.4688 21 16 2.6310 -1.2337 -3.5300 22 7 1.9773 -0.1154 -2.4275 23 1 1.6349 0.7703 -2.6256 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 3.3353 -5.0044 -4.0525 34 1 3.6739 -3.3187 -4.5120 35 1 5.8589 -2.8084 -2.4196 36 1 7.2309 -3.3549 -3.4135 37 1 5.9492 -2.3553 -4.1385 38 1 5.1344 -6.4077 -3.0343 39 1 6.7549 -5.7218 -2.7686 40 1 5.3830 -5.1748 -1.7748 41 1 8.9380 -5.3419 -4.6104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413408955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:03 Heat of formation + Delta-G solvation = 48.084078 kcal Electronic energy + Delta-G solvation = -20536.400869 eV Core-core repulsion = 17578.145702 eV Total energy + Delta-G solvation = -2958.255168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47010 -36.90687 -35.96427 -33.95049 -32.21539 -30.54510 -27.69453 -27.39621 -25.96213 -25.44802 -25.09275 -23.61775 -20.69861 -19.97308 -18.66426 -18.14888 -16.94646 -15.89916 -15.42458 -15.11765 -14.71328 -14.58251 -14.17350 -13.98941 -13.26481 -12.84517 -12.63713 -12.43340 -12.27049 -12.17592 -11.97068 -11.59230 -11.33474 -11.26082 -11.18497 -11.13003 -10.98254 -10.73396 -10.64599 -10.29079 -10.11395 -10.03512 -9.61630 -9.34400 -9.05046 -8.77504 -8.34301 -8.24920 -7.08306 -5.89956 -4.01878 0.94958 1.28632 1.95295 3.26263 3.34484 3.38976 3.41594 3.60090 4.35101 4.37117 4.46269 4.56505 4.68220 4.94086 5.17203 5.32664 5.34959 5.36887 5.52491 5.65064 5.69601 5.76022 5.93919 5.99516 6.19347 6.29231 6.43432 6.62702 6.81939 6.94153 7.13783 7.22746 7.40891 7.51909 7.68102 7.77164 7.81335 8.17752 8.28396 8.37653 8.53938 8.98225 9.62893 11.10415 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034947 B = 0.003939 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.029118 B = 7106.228881 C = 7355.236718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.400 3.600 6 N -0.519 5.519 7 C 0.329 3.671 8 N -0.451 5.451 9 C 0.067 3.933 10 C 0.078 3.922 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 S 0.050 5.950 22 N -0.693 5.693 23 H 0.439 0.561 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.009 0.991 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.020 0.980 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 14.261 8.487 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.011 4.011 3 C -0.203 4.203 4 C -0.187 4.187 5 C 0.115 3.885 6 N -0.249 5.249 7 C -0.062 4.062 8 N -0.173 5.173 9 C -0.063 4.063 10 C 0.077 3.923 11 C -0.186 4.186 12 C -0.180 4.180 13 C -0.549 4.549 14 H 0.072 0.928 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 S 0.171 5.829 22 N -0.424 5.424 23 H 0.282 0.718 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.404 12.964 8.289 20.407 hybrid contribution -0.113 0.870 -1.322 1.587 sum -13.517 13.834 6.967 20.558 Atomic orbital electron populations 1.21904 0.92098 1.03245 1.02581 1.19636 0.96438 0.94769 0.90243 1.21961 1.02238 0.93486 1.02640 1.21737 1.02119 1.01074 0.93752 1.22888 0.89251 0.88106 0.88292 1.67799 1.24169 1.08337 1.24602 1.26286 0.99509 0.93369 0.87029 1.71956 1.12529 1.07518 1.25324 1.22695 1.01019 0.98723 0.83856 1.18131 0.85574 0.93218 0.95407 1.21785 1.04298 0.96751 0.95732 1.21683 1.03137 0.97226 0.95996 1.21021 0.94004 1.44900 0.94990 0.92803 1.24872 0.96522 0.95301 0.96699 1.69833 1.02503 1.48436 1.31368 0.86671 0.77408 0.79197 0.84767 1.20378 1.21303 1.20297 1.86240 1.72834 1.12991 1.10851 1.46984 1.65542 1.21670 1.08183 0.71771 0.92424 0.91495 0.90861 0.90695 0.91544 0.92550 0.90776 0.91714 0.92107 0.90122 0.94736 0.97164 0.89791 0.96154 0.96010 0.90302 0.96074 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.46 37.16 0.31 -0.65 16 2 C -0.01 -0.05 0.97 -155.66 -0.15 -0.20 16 3 C -0.15 -0.94 8.24 37.16 0.31 -0.64 16 4 C -0.13 -1.22 7.83 37.16 0.29 -0.93 16 5 C 0.40 5.16 6.15 -158.23 -0.97 4.19 16 6 N -0.52 -8.96 9.40 -11.65 -0.11 -9.07 16 7 C 0.33 6.51 8.61 -89.60 -0.77 5.74 16 8 N -0.45 -10.13 9.16 -61.03 -0.56 -10.69 16 9 C 0.07 1.57 5.21 -4.04 -0.02 1.55 16 10 C 0.08 2.02 0.57 -155.66 -0.09 1.93 16 11 C -0.13 -3.33 8.09 37.16 0.30 -3.03 16 12 C -0.12 -3.21 8.09 37.15 0.30 -2.91 16 13 C -0.51 -14.15 8.01 -34.44 -0.28 -14.42 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.07 1.87 5.15 -17.82 -0.09 1.77 16 16 N -0.88 -25.06 9.35 55.43 0.52 -24.54 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 S 0.05 0.83 22.44 -107.50 -2.41 -1.59 16 22 N -0.69 -8.16 6.47 31.50 0.20 -7.96 16 23 H 0.44 3.51 7.97 -40.82 -0.33 3.18 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 30 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 34 H 0.03 0.78 6.46 -51.93 -0.34 0.45 16 35 H 0.01 0.24 7.60 -51.93 -0.39 -0.15 16 36 H 0.08 2.35 6.07 -51.93 -0.32 2.04 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.02 0.52 7.60 -51.93 -0.39 0.13 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -31.48 337.36 -9.79 -41.26 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.63 Total: -1.30 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.86 Total: -7.58 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.05 Total: -52.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.41 Total: -1.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.48 -9.79 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.345 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds