Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 N 1.28434 * 120.47772 * 254.72821 * 5 2 1 7 7 C 1.34737 * 116.90565 * 179.76389 * 6 5 2 8 8 N 1.31755 * 127.89467 * 180.17361 * 7 6 5 9 9 C 1.46502 * 119.99616 * 180.30779 * 8 7 6 10 10 C 1.52999 * 109.47254 * 119.99975 * 9 8 7 11 11 C 1.53005 * 109.46994 * 299.99482 * 10 9 8 12 12 C 1.52994 * 109.47567 * 59.99331 * 10 9 8 13 13 C 1.50701 * 109.47407 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99599 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00249 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00069 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00123 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46818 * 60.00000 * 17 15 13 19 19 H 1.48499 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47144 * 300.00312 * 17 15 13 21 21 S 1.77485 * 104.20666 * 0.43875 * 7 6 5 22 22 N 1.33796 * 120.46766 * 75.00558 * 5 2 1 23 23 H 0.96996 * 127.11919 * 359.97350 * 22 5 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.08998 * 109.46932 * 239.99442 * 9 8 7 34 34 H 1.08998 * 109.47412 * 359.97438 * 9 8 7 35 35 H 1.09000 * 109.47014 * 60.00034 * 11 10 9 36 36 H 1.08997 * 109.47291 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47445 * 300.00445 * 11 10 9 38 38 H 1.09006 * 109.46886 * 60.00679 * 12 10 9 39 39 H 1.08999 * 109.47508 * 179.97438 * 12 10 9 40 40 H 1.08993 * 109.47398 * 300.00597 * 12 10 9 41 41 H 0.96994 * 120.00094 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 2.5244 -1.8937 -1.1442 7 6 2.9473 -2.4632 -2.2897 8 7 3.4795 -3.6575 -2.4513 9 6 3.8874 -4.1032 -3.7860 10 6 5.3873 -4.4051 -3.7867 11 6 6.1623 -3.1400 -3.4126 12 6 5.6864 -5.5064 -2.7677 13 6 5.8069 -4.8629 -5.1598 14 1 5.0767 -4.9320 -5.9525 15 6 7.1230 -5.1935 -5.4040 16 7 8.0121 -5.1097 -4.4385 17 14 7.6430 -5.7616 -7.1058 18 1 7.3521 -4.6927 -8.0948 19 1 9.0991 -6.0533 -7.1069 20 1 6.8913 -6.9898 -7.4688 21 16 2.6310 -1.2337 -3.5300 22 7 1.9773 -0.1154 -2.4275 23 1 1.6349 0.7703 -2.6256 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 3.3353 -5.0044 -4.0525 34 1 3.6739 -3.3187 -4.5120 35 1 5.8589 -2.8084 -2.4196 36 1 7.2309 -3.3549 -3.4135 37 1 5.9492 -2.3553 -4.1385 38 1 5.1344 -6.4077 -3.0343 39 1 6.7549 -5.7218 -2.7686 40 1 5.3830 -5.1748 -1.7748 41 1 8.9380 -5.3419 -4.6104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413408955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = 29.068693 kcal Electronic energy + Delta-G solvation = -20537.225438 eV Core-core repulsion = 17578.145702 eV Total energy + Delta-G solvation = -2959.079736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59333 -38.63139 -37.05920 -35.46412 -33.78703 -32.37552 -28.21569 -28.18400 -27.66371 -27.46640 -27.08192 -24.98128 -22.03400 -21.27557 -20.15663 -19.54000 -18.24037 -17.81408 -16.82832 -16.48561 -16.21639 -16.02893 -15.22190 -14.87236 -14.69350 -14.64990 -14.21488 -13.49157 -13.35907 -13.20240 -13.09614 -13.03152 -12.79784 -12.61463 -12.59048 -12.49294 -12.30998 -12.13491 -12.12246 -11.95975 -11.91127 -11.64701 -11.44024 -11.27355 -10.78693 -10.56088 -10.38573 -9.89623 -8.53317 -7.99195 -6.19250 -0.28658 0.01285 0.50954 1.44293 1.45414 1.52778 1.91744 2.40766 2.51222 3.21908 3.32507 3.45399 3.83693 3.91410 4.17394 4.27943 4.53511 4.63241 4.67797 4.73386 4.81350 4.86597 4.87331 4.98071 5.00810 5.04653 5.07752 5.13556 5.24583 5.31131 5.36822 5.41868 5.49428 5.61144 5.64772 5.88808 6.04411 6.19362 6.32801 6.41791 6.84556 6.98227 7.48582 8.99212 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034947 B = 0.003939 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.029118 B = 7106.228881 C = 7355.236718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.003 4.003 3 C -0.143 4.143 4 C -0.128 4.128 5 C 0.413 3.587 6 N -0.559 5.559 7 C 0.334 3.666 8 N -0.505 5.505 9 C 0.084 3.916 10 C 0.068 3.932 11 C -0.107 4.107 12 C -0.107 4.107 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 0.954 3.046 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.273 1.273 21 S 0.048 5.952 22 N -0.664 5.664 23 H 0.460 0.540 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.008 0.992 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 16.839 8.626 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.008 4.008 3 C -0.201 4.201 4 C -0.186 4.186 5 C 0.130 3.870 6 N -0.291 5.291 7 C -0.057 4.057 8 N -0.231 5.231 9 C -0.047 4.047 10 C 0.067 3.933 11 C -0.165 4.165 12 C -0.165 4.165 13 C -0.569 4.569 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.544 5.544 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 S 0.170 5.830 22 N -0.397 5.397 23 H 0.309 0.691 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.190 15.628 8.407 23.359 hybrid contribution 0.299 0.295 -1.251 1.320 sum -14.891 15.923 7.156 22.945 Atomic orbital electron populations 1.21932 0.89909 1.02872 1.04772 1.19951 0.97899 0.95570 0.87428 1.22007 1.01411 0.91669 1.05025 1.21741 1.00819 1.00483 0.95601 1.23749 0.86582 0.87023 0.89668 1.67851 1.26867 1.10421 1.24007 1.26615 0.97278 0.93239 0.88536 1.71928 1.17029 1.09804 1.24368 1.22282 0.98845 0.98557 0.85032 1.18154 0.87848 0.92745 0.94572 1.21539 1.02641 0.96849 0.95482 1.21493 1.01373 0.97380 0.96252 1.21306 0.94406 1.45412 0.95773 0.92926 1.25606 0.96493 0.95295 1.00205 1.69972 1.02632 1.48760 1.33035 0.85687 0.77013 0.78850 0.80504 1.19762 1.20931 1.19802 1.86209 1.72493 1.13149 1.11108 1.46999 1.64114 1.21850 1.06707 0.69128 0.90994 0.93182 0.87993 0.87973 0.92953 0.90649 0.92983 0.93772 0.88843 0.90942 0.94842 0.97317 0.92088 0.96340 0.96248 0.92482 0.96118 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.46 71.98 0.61 -0.74 16 2 C 0.00 -0.05 0.97 -52.93 -0.05 -0.10 16 3 C -0.14 -1.26 8.24 71.98 0.59 -0.67 16 4 C -0.13 -2.21 7.83 71.98 0.56 -1.64 16 5 C 0.41 9.93 6.15 139.11 0.86 10.79 16 6 N -0.56 -19.20 9.40 -190.77 -1.79 -20.99 16 7 C 0.33 13.34 8.61 179.99 1.55 14.89 16 8 N -0.51 -23.42 9.16 -347.00 -3.18 -26.60 16 9 C 0.08 4.02 5.21 86.38 0.45 4.47 16 10 C 0.07 3.63 0.57 -52.93 -0.03 3.60 16 11 C -0.11 -5.74 8.09 71.98 0.58 -5.16 16 12 C -0.11 -5.82 8.09 71.98 0.58 -5.23 16 13 C -0.53 -29.90 8.01 25.60 0.21 -29.70 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.02 1.30 5.15 84.65 0.44 1.74 16 16 N -0.91 -52.37 9.35 21.45 0.20 -52.17 16 17 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 S 0.05 1.54 22.44 -56.49 -1.27 0.27 16 22 N -0.66 -13.91 6.47 -54.26 -0.35 -14.26 16 23 H 0.46 5.54 7.97 -92.71 -0.74 4.81 16 24 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.39 7.16 -2.39 -0.02 0.37 16 30 H 0.05 1.13 7.89 -2.39 -0.02 1.11 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.03 1.55 6.46 -2.39 -0.02 1.54 16 35 H 0.01 0.42 7.60 -2.39 -0.02 0.40 16 36 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 40 H 0.02 1.07 7.60 -2.39 -0.02 1.05 16 41 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -70.54 337.36 2.26 -68.28 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.28 Total: 7.11 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 6.35 Total: -7.76 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -5.12 Total: -114.02 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.27 Total: 0.27 kcal Total: -70.54 2.26 -68.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.345 kcal (2) G-P(sol) polarization free energy of solvation -70.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds