Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38327 * 120.03620 * 2 1 4 4 F 1.35104 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.38663 * 120.00556 * 180.25474 * 3 2 1 6 6 F 1.35101 * 119.96150 * 179.75265 * 5 3 2 7 7 C 1.38417 * 120.08052 * 359.76672 * 5 3 2 8 8 C 1.38140 * 120.07152 * 0.02562 * 7 5 3 9 9 C 1.38840 * 120.03857 * 179.77155 * 2 1 3 10 10 N 1.39811 * 120.03794 * 0.02562 * 9 2 1 11 11 C 1.46504 * 119.99600 * 179.72457 * 10 9 2 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47164 * 300.00241 * 12 11 10 14 14 C 1.52999 * 109.46623 * 60.00141 * 12 11 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00542 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00563 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99513 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46964 * 90.00276 * 20 18 16 22 22 H 1.48502 * 109.47035 * 210.00108 * 20 18 16 23 23 H 1.48499 * 109.47257 * 330.00183 * 20 18 16 24 24 H 1.08995 * 109.47408 * 270.22375 * 1 2 3 25 25 H 1.08998 * 109.47239 * 30.23364 * 1 2 3 26 26 H 1.09004 * 109.46922 * 150.22490 * 1 2 3 27 27 H 1.08001 * 119.96266 * 179.97438 * 7 5 3 28 28 H 1.07992 * 120.00130 * 179.97438 * 8 7 5 29 29 H 0.96992 * 120.00434 * 359.72527 * 10 9 2 30 30 H 1.09001 * 109.46891 * 60.00085 * 11 10 9 31 31 H 1.08993 * 109.47378 * 299.99457 * 11 10 9 32 32 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 33 33 H 1.09001 * 109.47230 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47375 * 300.00034 * 13 12 11 35 35 H 1.09001 * 109.47362 * 60.00551 * 14 12 11 36 36 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 37 37 H 1.09000 * 109.47486 * 299.99829 * 14 12 11 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 15 12 11 40 40 H 0.96999 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1975 0.0000 4 9 1.5245 2.3680 0.0005 5 6 3.5860 1.1968 -0.0053 6 9 4.2613 2.3669 -0.0104 7 6 4.2791 -0.0013 -0.0058 8 6 3.5910 -1.1991 -0.0015 9 6 2.2020 -1.2019 0.0048 10 7 1.5045 -2.4136 0.0091 11 6 2.2388 -3.6814 0.0080 12 6 1.2461 -4.8457 0.0140 13 6 0.3716 -4.7638 1.2667 14 6 0.3613 -4.7677 -1.2317 15 6 2.0129 -6.1696 0.0136 16 6 1.0352 -7.3164 0.0188 17 1 -0.0269 -7.1205 0.0218 18 6 1.4965 -8.6157 0.0199 19 7 0.6433 -9.6165 0.0240 20 14 3.3336 -8.9545 0.0156 21 1 3.8240 -9.0419 1.4145 22 1 3.5985 -10.2380 -0.6828 23 1 4.0384 -7.8532 -0.6882 24 1 -0.3634 0.0040 1.0276 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5104 27 1 5.3591 0.0003 -0.0104 28 1 4.1329 -2.1332 -0.0022 29 1 0.5346 -2.4150 0.0127 30 1 2.8689 -3.7370 0.8958 31 1 2.8621 -3.7395 -0.8842 32 1 -0.1747 -3.8206 1.2675 33 1 -0.3359 -5.5930 1.2708 34 1 1.0020 -4.8193 2.1542 35 1 0.9843 -4.8261 -2.1242 36 1 -0.3456 -5.5974 -1.2277 37 1 -0.1850 -3.8245 -1.2310 38 1 2.6362 -6.2282 -0.8786 39 1 2.6430 -6.2248 0.9013 40 1 0.9678 -10.5306 0.0244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414595158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = -83.623069 kcal Electronic energy + Delta-G solvation = -22181.323052 eV Core-core repulsion = 18631.223497 eV Total energy + Delta-G solvation = -3550.099556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.40983 -48.46229 -39.77595 -37.59044 -34.34414 -32.80411 -32.18396 -29.10480 -27.82578 -27.06410 -26.64450 -26.01959 -22.92661 -21.99946 -21.47693 -18.68357 -17.87322 -17.22944 -17.07328 -16.83614 -16.33311 -15.85210 -14.93786 -14.85227 -14.63773 -14.42758 -14.10587 -13.78020 -13.63375 -13.53420 -13.05717 -12.87221 -12.83153 -12.63507 -12.34227 -11.98291 -11.92981 -11.32982 -11.28288 -11.21424 -11.07799 -10.70668 -10.56727 -10.13789 -9.85931 -9.78903 -9.62940 -9.08357 -8.89569 -8.60761 -7.43121 -6.10859 -4.08824 0.92810 1.14422 3.24647 3.31476 3.33699 3.34606 3.38817 3.90155 4.37387 4.38289 4.51631 4.71985 4.91196 5.19672 5.20562 5.21684 5.37352 5.38346 5.42676 5.51612 5.64413 5.79282 5.89812 5.93776 5.97780 5.98919 6.06010 6.09530 6.20892 6.45350 6.50626 6.65501 6.78071 6.92868 6.95791 7.08637 7.20073 7.25886 7.64308 7.71208 8.45579 8.93056 9.51213 11.01904 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.003570 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.027671 B = 7841.474663 C = 8544.835182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.182 4.182 3 C 0.115 3.885 4 F -0.131 7.131 5 C -0.006 4.006 6 F -0.141 7.141 7 C -0.077 4.077 8 C -0.180 4.180 9 C 0.246 3.754 10 N -0.726 5.726 11 C 0.124 3.876 12 C -0.062 4.062 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.001 4.001 16 C -0.513 4.513 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.403 0.597 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 18.497 -0.059 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.188 4.188 3 C 0.094 3.906 4 F -0.109 7.109 5 C -0.029 4.029 6 F -0.120 7.120 7 C -0.097 4.097 8 C -0.203 4.203 9 C 0.138 3.862 10 N -0.354 5.354 11 C 0.001 3.999 12 C -0.062 4.062 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.039 4.039 16 C -0.551 4.551 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.242 0.758 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.444 18.161 -0.063 18.485 hybrid contribution 0.710 0.043 0.017 0.712 sum 4.154 18.205 -0.047 18.673 Atomic orbital electron populations 1.20530 0.89800 1.03129 1.02702 1.19111 0.96916 0.89971 1.12829 1.17137 0.88024 0.81410 1.04052 1.91478 1.80118 1.45512 1.93818 1.17303 0.88047 0.82469 1.15032 1.91465 1.79808 1.45688 1.94995 1.20758 1.00587 0.89884 0.98455 1.20603 0.92008 0.98484 1.09254 1.17468 0.91145 0.85695 0.91932 1.45192 1.08879 1.02379 1.78969 1.21749 0.95206 0.82078 1.00880 1.20662 0.95187 0.94489 0.95856 1.21774 0.99826 1.00327 0.96698 1.21770 0.99777 1.00306 0.96751 1.19586 0.96007 0.91857 0.96424 1.21065 0.94403 0.88988 1.50659 0.90416 1.25007 0.97370 0.96350 0.94687 1.69897 1.34142 0.99017 1.51082 0.86851 0.86550 0.77805 0.78478 1.20364 1.21464 1.19073 0.90927 0.91028 0.91285 0.84088 0.84283 0.75834 0.92094 0.92105 0.95004 0.90861 0.93368 0.93364 0.90846 0.95033 0.96402 0.96842 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.39 36.00 0.34 -0.69 16 2 C -0.18 -2.15 5.90 -104.37 -0.62 -2.77 16 3 C 0.11 1.46 7.24 -39.39 -0.29 1.17 16 4 F -0.13 -1.72 16.39 2.25 0.04 -1.69 16 5 C -0.01 -0.08 7.30 -39.36 -0.29 -0.37 16 6 F -0.14 -1.88 17.18 2.25 0.04 -1.84 16 7 C -0.08 -0.84 10.02 -39.55 -0.40 -1.23 16 8 C -0.18 -2.03 9.31 -39.37 -0.37 -2.39 16 9 C 0.25 2.94 6.63 -83.75 -0.56 2.39 16 10 N -0.73 -8.79 5.04 -58.61 -0.30 -9.09 16 11 C 0.12 1.71 3.80 -4.04 -0.02 1.69 16 12 C -0.06 -1.02 0.54 -154.51 -0.08 -1.11 16 13 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 14 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 15 C 0.00 -0.02 3.11 -27.89 -0.09 -0.11 16 16 C -0.51 -13.19 8.20 -34.44 -0.28 -13.47 16 17 H 0.08 2.13 5.92 -52.48 -0.31 1.82 16 18 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 19 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 20 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.67 7.65 -51.93 -0.40 0.27 16 26 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 27 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.14 1.43 6.73 -52.49 -0.35 1.07 16 29 H 0.40 4.63 4.16 -40.82 -0.17 4.46 16 30 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 31 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 37 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -28.09 323.23 -6.80 -34.89 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.42 Total: 1.41 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -2.14 Total: -18.74 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.48 Total: -34.85 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.09 -6.80 -34.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414595158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.732 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds