Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38327 * 120.03620 * 2 1 4 4 F 1.35104 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.38663 * 120.00556 * 180.25474 * 3 2 1 6 6 F 1.35101 * 119.96150 * 179.75265 * 5 3 2 7 7 C 1.38417 * 120.08052 * 359.76672 * 5 3 2 8 8 C 1.38140 * 120.07152 * 0.02562 * 7 5 3 9 9 C 1.38840 * 120.03857 * 179.77155 * 2 1 3 10 10 N 1.39811 * 120.03794 * 0.02562 * 9 2 1 11 11 C 1.46504 * 119.99600 * 179.72457 * 10 9 2 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47164 * 300.00241 * 12 11 10 14 14 C 1.52999 * 109.46623 * 60.00141 * 12 11 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00542 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00563 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99513 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46964 * 90.00276 * 20 18 16 22 22 H 1.48502 * 109.47035 * 210.00108 * 20 18 16 23 23 H 1.48499 * 109.47257 * 330.00183 * 20 18 16 24 24 H 1.08995 * 109.47408 * 270.22375 * 1 2 3 25 25 H 1.08998 * 109.47239 * 30.23364 * 1 2 3 26 26 H 1.09004 * 109.46922 * 150.22490 * 1 2 3 27 27 H 1.08001 * 119.96266 * 179.97438 * 7 5 3 28 28 H 1.07992 * 120.00130 * 179.97438 * 8 7 5 29 29 H 0.96992 * 120.00434 * 359.72527 * 10 9 2 30 30 H 1.09001 * 109.46891 * 60.00085 * 11 10 9 31 31 H 1.08993 * 109.47378 * 299.99457 * 11 10 9 32 32 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 33 33 H 1.09001 * 109.47230 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47375 * 300.00034 * 13 12 11 35 35 H 1.09001 * 109.47362 * 60.00551 * 14 12 11 36 36 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 37 37 H 1.09000 * 109.47486 * 299.99829 * 14 12 11 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 15 12 11 40 40 H 0.96999 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1975 0.0000 4 9 1.5245 2.3680 0.0005 5 6 3.5860 1.1968 -0.0053 6 9 4.2613 2.3669 -0.0104 7 6 4.2791 -0.0013 -0.0058 8 6 3.5910 -1.1991 -0.0015 9 6 2.2020 -1.2019 0.0048 10 7 1.5045 -2.4136 0.0091 11 6 2.2388 -3.6814 0.0080 12 6 1.2461 -4.8457 0.0140 13 6 0.3716 -4.7638 1.2667 14 6 0.3613 -4.7677 -1.2317 15 6 2.0129 -6.1696 0.0136 16 6 1.0352 -7.3164 0.0188 17 1 -0.0269 -7.1205 0.0218 18 6 1.4965 -8.6157 0.0199 19 7 0.6433 -9.6165 0.0240 20 14 3.3336 -8.9545 0.0156 21 1 3.8240 -9.0419 1.4145 22 1 3.5985 -10.2380 -0.6828 23 1 4.0384 -7.8532 -0.6882 24 1 -0.3634 0.0040 1.0276 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5104 27 1 5.3591 0.0003 -0.0104 28 1 4.1329 -2.1332 -0.0022 29 1 0.5346 -2.4150 0.0127 30 1 2.8689 -3.7370 0.8958 31 1 2.8621 -3.7395 -0.8842 32 1 -0.1747 -3.8206 1.2675 33 1 -0.3359 -5.5930 1.2708 34 1 1.0020 -4.8193 2.1542 35 1 0.9843 -4.8261 -2.1242 36 1 -0.3456 -5.5974 -1.2277 37 1 -0.1850 -3.8245 -1.2310 38 1 2.6362 -6.2282 -0.8786 39 1 2.6430 -6.2248 0.9013 40 1 0.9678 -10.5306 0.0244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414595158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = -97.859638 kcal Electronic energy + Delta-G solvation = -22181.940396 eV Core-core repulsion = 18631.223497 eV Total energy + Delta-G solvation = -3550.716900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.37345 -49.43473 -40.71909 -38.84358 -35.55135 -34.24992 -33.47559 -30.31702 -29.28181 -27.98817 -27.97684 -27.14220 -24.48920 -22.93724 -22.57521 -19.89021 -18.97685 -18.85898 -18.09729 -18.01118 -17.28604 -16.87614 -16.32274 -15.91728 -15.78200 -15.60082 -15.36973 -15.16771 -14.66537 -14.50479 -14.30025 -14.20075 -14.01265 -13.72280 -13.60954 -13.12128 -12.83768 -12.79810 -12.75917 -12.48025 -12.29127 -12.23185 -11.99156 -11.72049 -11.50261 -11.15143 -10.87384 -10.80664 -10.68057 -9.77242 -8.35546 -8.19777 -6.20674 0.05124 0.24052 1.39764 1.42037 1.51652 2.34249 2.41926 2.51004 3.01489 3.16254 3.46083 3.68942 3.88811 3.94298 4.09783 4.10509 4.18155 4.37668 4.55112 4.65898 4.71049 4.76571 4.78195 4.81417 4.97322 4.97825 5.06580 5.11090 5.16548 5.17658 5.21675 5.34468 5.40196 5.44305 5.57541 5.71286 5.74719 5.80530 6.23510 6.41814 6.72528 6.87546 7.42353 8.96217 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.003570 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.027671 B = 7841.474663 C = 8544.835182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.182 4.182 3 C 0.097 3.903 4 F -0.138 7.138 5 C -0.021 4.021 6 F -0.149 7.149 7 C -0.071 4.071 8 C -0.179 4.179 9 C 0.239 3.761 10 N -0.724 5.724 11 C 0.136 3.864 12 C -0.058 4.058 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.002 4.002 16 C -0.504 4.504 17 H 0.045 0.955 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.939 3.061 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.242 1.242 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.154 0.846 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 20.061 -0.059 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.077 3.923 4 F -0.117 7.117 5 C -0.043 4.043 6 F -0.128 7.128 7 C -0.090 4.090 8 C -0.202 4.202 9 C 0.132 3.868 10 N -0.353 5.353 11 C 0.012 3.988 12 C -0.059 4.059 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.040 4.040 16 C -0.543 4.543 17 H 0.063 0.937 18 C -0.195 4.195 19 N -0.598 5.598 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.165 1.165 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.245 0.755 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.234 19.767 -0.064 20.448 hybrid contribution 0.066 -0.389 0.019 0.395 sum 5.300 19.378 -0.045 20.090 Atomic orbital electron populations 1.20595 0.88631 1.03680 1.03389 1.19267 0.97868 0.89575 1.12084 1.17354 0.88329 0.81575 1.05089 1.91455 1.80284 1.45957 1.93999 1.17594 0.88200 0.82822 1.15719 1.91441 1.79948 1.46298 1.95127 1.20997 1.01800 0.88982 0.97213 1.20824 0.91827 0.99144 1.08426 1.17539 0.91533 0.85434 0.92291 1.44994 1.08910 1.01856 1.79493 1.21488 0.94194 0.81310 1.01764 1.20530 0.95529 0.93752 0.96058 1.21701 0.99325 1.00512 0.96643 1.21699 0.99276 1.00506 0.96689 1.19558 0.95357 0.92478 0.96571 1.21423 0.94099 0.90504 1.48232 0.93669 1.25920 1.02150 0.96379 0.95040 1.70064 1.36473 0.99436 1.53817 0.85828 0.81008 0.77955 0.78854 1.19700 1.22052 1.16537 0.90125 0.90878 0.90356 0.81690 0.82873 0.75469 0.91235 0.91307 0.91991 0.94308 0.93254 0.93279 0.94287 0.92000 0.96093 0.96250 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.39 71.23 0.67 -1.16 16 2 C -0.18 -3.86 5.90 -19.70 -0.12 -3.98 16 3 C 0.10 2.32 7.24 22.39 0.16 2.48 16 4 F -0.14 -3.52 16.39 44.97 0.74 -2.78 16 5 C -0.02 -0.50 7.30 22.41 0.16 -0.33 16 6 F -0.15 -3.79 17.18 44.97 0.77 -3.02 16 7 C -0.07 -1.32 10.02 22.29 0.22 -1.10 16 8 C -0.18 -3.40 9.31 22.41 0.21 -3.19 16 9 C 0.24 4.96 6.63 38.17 0.25 5.22 16 10 N -0.72 -14.94 5.04 -339.35 -1.71 -16.65 16 11 C 0.14 3.25 3.80 86.38 0.33 3.57 16 12 C -0.06 -1.82 0.54 -52.18 -0.03 -1.85 16 13 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 14 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 15 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 16 C -0.50 -26.27 8.20 25.60 0.21 -26.06 16 17 H 0.05 2.59 5.92 -2.91 -0.02 2.58 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.96 -58.02 13.96 21.45 0.30 -57.72 16 20 Si 0.94 42.02 27.47 68.60 1.88 43.91 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.24 -9.80 6.54 99.48 0.65 -9.14 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 26 H 0.08 1.19 6.55 -2.38 -0.02 1.17 16 27 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 28 H 0.15 2.47 6.73 -2.91 -0.02 2.45 16 29 H 0.41 7.86 4.16 -92.71 -0.39 7.48 16 30 H 0.07 1.58 7.95 -2.39 -0.02 1.56 16 31 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 32 H 0.06 1.53 6.86 -2.39 -0.02 1.51 16 33 H 0.04 1.46 6.62 -2.39 -0.02 1.44 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 37 H 0.06 1.52 6.86 -2.39 -0.02 1.50 16 38 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 39 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -61.84 323.23 6.39 -55.44 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.62 Total: 13.25 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 3.79 Total: -32.43 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.41 Total: -74.37 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.51 Total: -5.80 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -61.84 6.39 -55.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414595158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.415 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds