Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 12 16 16 C 1.47425 * 119.99743 * 179.72398 * 14 13 12 17 17 C 1.41295 * 126.41512 * 0.02562 * 16 14 13 18 18 N 1.30447 * 108.02210 * 179.97438 * 17 16 14 19 19 N 1.39928 * 108.89904 * 359.97438 * 18 17 16 20 20 C 1.46508 * 125.75569 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47240 * 304.98095 * 20 19 18 22 22 F 1.39898 * 109.46958 * 180.02562 * 21 20 19 23 23 C 1.34259 * 108.49378 * 359.75348 * 19 18 17 24 24 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 34 34 H 1.08003 * 125.98888 * 359.94654 * 17 16 14 35 35 H 1.09003 * 109.46632 * 64.98079 * 20 19 18 36 36 H 1.08995 * 109.47040 * 184.97311 * 20 19 18 37 37 H 1.09001 * 109.46392 * 299.99675 * 21 20 19 38 38 H 1.08998 * 109.47040 * 59.99477 * 21 20 19 39 39 H 1.08003 * 126.29424 * 180.24694 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5809 -1.4764 3.7812 16 6 1.3954 0.2109 4.8732 17 6 0.5800 1.3645 4.9015 18 7 0.3661 1.6770 6.1498 19 7 1.0241 0.7518 6.9678 20 6 1.0297 0.7563 8.4328 21 6 1.5202 2.1151 8.9368 22 9 1.5261 2.1191 10.3358 23 6 1.6455 -0.1435 6.1837 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7584 2.3564 34 1 0.2007 1.8948 4.0405 35 1 0.0196 0.5754 8.8005 36 1 1.6943 -0.0275 8.7960 37 1 2.5303 2.2959 8.5691 38 1 0.8555 2.8989 8.5735 39 1 2.2352 -0.9847 6.5170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -20.137609 kcal Electronic energy + Delta-G solvation = -21777.191932 eV Core-core repulsion = 18249.765274 eV Total energy + Delta-G solvation = -3527.426658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.20092 -41.50437 -38.83813 -36.27709 -34.54231 -33.20314 -30.95578 -30.56925 -29.27784 -25.71801 -25.70570 -25.05640 -24.04678 -22.47732 -20.96188 -19.84438 -18.77310 -18.10237 -16.91264 -16.59711 -15.97064 -15.80719 -15.36900 -15.03364 -15.00420 -14.59874 -14.44040 -14.12130 -13.43239 -13.17241 -13.00162 -12.78452 -12.66613 -12.15924 -12.00459 -11.52555 -11.35978 -11.19774 -11.06422 -10.83354 -10.71819 -10.36533 -10.18984 -9.81015 -9.61279 -9.57358 -9.24876 -8.86690 -8.77930 -8.40825 -8.23789 -6.00628 -4.10646 1.41837 1.96876 2.13730 3.31193 3.35499 3.38925 3.67127 3.77539 3.91026 4.08392 4.41308 4.44089 4.48720 4.59853 4.72428 4.89320 5.17199 5.24629 5.26090 5.34805 5.70770 6.20435 6.31837 6.35992 6.53618 6.55448 6.81116 6.84483 6.96521 7.04354 7.07233 7.32664 7.38108 7.57685 7.70957 8.03066 8.10178 8.19772 8.40474 8.76685 8.90231 9.55079 11.00743 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.047472 B = 0.002912 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.678251 B = 9611.520241 C = 9910.493978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.711 5.711 14 C 0.583 3.417 15 O -0.562 6.562 16 C -0.279 4.279 17 C 0.088 3.912 18 N -0.300 5.300 19 N -0.370 5.370 20 C 0.104 3.896 21 C 0.053 3.947 22 F -0.208 7.208 23 C 0.124 3.876 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.193 0.807 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 2.955 19.286 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.360 5.360 14 C 0.369 3.631 15 O -0.442 6.442 16 C -0.294 4.294 17 C -0.100 4.100 18 N -0.120 5.120 19 N -0.150 5.150 20 C -0.018 4.018 21 C -0.003 4.003 22 F -0.189 7.189 23 C -0.025 4.025 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.210 0.790 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.351 3.190 20.165 20.461 hybrid contribution 0.427 -0.672 -1.396 1.607 sum -0.924 2.519 18.769 18.960 Atomic orbital electron populations 1.21835 0.97762 0.99217 1.00081 1.18352 0.92794 0.92756 0.90549 1.21835 0.98619 0.98355 1.00080 1.20954 1.31503 1.12107 0.89911 0.92479 1.24874 0.94869 0.94918 0.98818 1.69790 1.36667 1.22722 1.23310 0.86639 0.79234 0.79795 0.82216 1.20293 1.21358 1.20299 1.21719 0.98158 0.95789 0.83237 1.46089 1.52473 1.31784 1.05699 1.17234 0.79960 0.83430 0.82479 1.90737 1.39542 1.26882 1.87053 1.20512 1.12207 1.02787 0.93871 1.24182 0.95664 0.94979 0.95195 1.77132 1.19223 1.13679 1.01966 1.48219 1.39104 1.21680 1.05994 1.22264 1.05049 0.99586 0.74909 1.22167 1.04232 0.98171 0.75749 1.92799 1.98185 1.97601 1.30332 1.22981 0.95151 0.94322 0.90083 0.97468 0.89604 0.95419 0.95423 0.89604 0.97470 0.92962 0.92668 0.92664 0.76832 0.79043 0.88216 0.87130 0.89914 0.88924 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.45 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.71 -12.56 4.95 -61.38 -0.30 -12.87 16 14 C 0.58 10.18 7.81 -12.52 -0.10 10.08 16 15 O -0.56 -11.64 16.90 5.27 0.09 -11.55 16 16 C -0.28 -3.84 6.13 -105.07 -0.64 -4.48 16 17 C 0.09 1.06 11.50 -16.98 -0.20 0.87 16 18 N -0.30 -3.55 12.33 30.86 0.38 -3.17 16 19 N -0.37 -3.65 3.65 -60.80 -0.22 -3.87 16 20 C 0.10 0.65 6.94 -4.04 -0.03 0.62 16 21 C 0.05 0.34 7.73 37.16 0.29 0.63 16 22 F -0.21 -1.66 17.36 2.25 0.04 -1.63 16 23 C 0.12 1.39 11.25 -16.56 -0.19 1.20 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 6.25 5.12 -40.82 -0.21 6.04 16 34 H 0.19 1.90 7.50 -52.48 -0.39 1.50 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -30.48 328.73 -5.58 -36.06 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.29 Total: 3.51 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.73 Total: -4.11 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.37 Total: -42.84 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.48 -5.58 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.921 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds