Wall clock time and date at job start Tue Mar 31 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47231 * 2 1 4 4 N 1.30133 * 121.06266 * 90.02061 * 3 2 1 5 5 S 1.69948 * 105.76450 * 179.97438 * 4 3 2 6 6 C 1.72296 * 94.57561 * 0.02562 * 5 4 3 7 7 N 1.38322 * 127.50525 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00114 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47088 * 89.99756 * 8 7 6 10 10 H 1.08001 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00153 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00137 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47246 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47143 * 120.00550 * 13 11 9 16 16 H 1.48497 * 109.47554 * 240.00108 * 13 11 9 17 17 C 1.46500 * 119.99461 * 359.97135 * 7 6 5 18 18 C 1.53001 * 109.47056 * 90.00508 * 17 7 6 19 19 C 1.53001 * 109.47470 * 59.99325 * 18 17 7 20 20 C 1.52998 * 109.47244 * 179.97438 * 18 17 7 21 21 C 1.52999 * 109.46956 * 299.99757 * 18 17 7 22 22 N 1.31288 * 121.06452 * 270.00558 * 3 2 1 23 23 H 1.09001 * 109.46832 * 59.99835 * 1 2 3 24 24 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46760 * 299.99829 * 1 2 3 26 26 H 1.08994 * 109.47173 * 240.00525 * 2 1 3 27 27 H 1.09000 * 109.47548 * 119.99957 * 2 1 3 28 28 H 1.08996 * 109.47110 * 210.00010 * 8 7 6 29 29 H 1.09001 * 109.47457 * 330.00424 * 8 7 6 30 30 H 0.96993 * 120.00008 * 179.97438 * 12 11 9 31 31 H 1.08998 * 109.47013 * 209.99644 * 17 7 6 32 32 H 1.08995 * 109.47461 * 330.00343 * 17 7 6 33 33 H 1.09003 * 109.46803 * 60.00200 * 19 18 17 34 34 H 1.08992 * 109.47165 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.46825 * 300.00468 * 19 18 17 36 36 H 1.09004 * 109.47135 * 60.00227 * 20 18 17 37 37 H 1.09001 * 109.46972 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.47236 * 299.99387 * 20 18 17 39 39 H 1.09005 * 109.47581 * 60.00027 * 21 18 17 40 40 H 1.09001 * 109.47441 * 179.97438 * 21 18 17 41 41 H 1.09004 * 109.47266 * 299.99677 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2566 2.0537 1.1147 5 16 2.8036 3.5991 0.6663 6 6 2.6957 3.2972 -1.0266 7 7 3.0032 4.1658 -2.0582 8 6 2.8500 3.7340 -3.4496 9 6 1.4581 4.0603 -3.9265 10 1 0.7579 4.5417 -3.2598 11 6 1.0790 3.7454 -5.2141 12 7 1.9318 3.1597 -6.0261 13 14 -0.6460 4.1505 -5.8053 14 1 -1.4049 4.8031 -4.7083 15 1 -0.5673 5.0711 -6.9680 16 1 -1.3371 2.9000 -6.2102 17 6 3.4821 5.5177 -1.7591 18 6 5.0085 5.5067 -1.6554 19 6 5.6066 5.0355 -2.9825 20 6 5.5087 6.9186 -1.3437 21 6 5.4368 4.5548 -0.5366 22 7 2.2581 2.0596 -1.1246 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.5785 4.2521 -4.0731 29 1 3.0140 2.6585 -3.5165 30 1 1.6650 2.9378 -6.9318 31 1 3.1771 6.1957 -2.5562 32 1 3.0561 5.8532 -0.8137 33 1 5.3015 5.7136 -3.7795 34 1 6.6940 5.0273 -2.9084 35 1 5.2502 4.0297 -3.2049 36 1 5.0828 7.2545 -0.3983 37 1 6.5962 6.9106 -1.2693 38 1 5.2038 7.5963 -2.1410 39 1 5.0805 3.5489 -0.7590 40 1 6.5242 4.5466 -0.4630 41 1 5.0108 4.8904 0.4089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569590279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:02 Heat of formation + Delta-G solvation = 35.806690 kcal Electronic energy + Delta-G solvation = -21125.375026 eV Core-core repulsion = 18166.587471 eV Total energy + Delta-G solvation = -2958.787555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.61085 -38.38380 -34.98531 -33.03150 -32.35587 -30.49668 -28.17101 -27.21225 -26.93011 -26.08096 -24.52665 -23.24715 -20.89573 -19.09057 -18.70469 -17.92983 -16.71684 -16.12249 -15.25684 -14.97786 -14.47340 -14.41727 -13.93358 -13.86351 -13.63983 -13.18884 -12.63014 -12.47057 -12.28034 -12.04276 -11.73882 -11.60915 -11.48606 -11.39471 -11.26624 -11.12719 -10.93042 -10.79339 -10.78625 -10.64919 -10.49298 -10.33890 -10.22180 -10.09013 -9.46839 -8.80604 -8.62804 -8.53522 -7.16119 -6.14471 -4.21185 1.45696 1.66946 2.45080 3.22853 3.31048 3.33165 3.41330 3.45927 4.34458 4.75521 4.89861 4.93906 5.10521 5.18914 5.36283 5.46685 5.54968 5.60771 5.66228 5.73092 5.86437 5.93127 5.97461 6.04696 6.05475 6.11438 6.15650 6.25503 6.31601 6.31959 6.42623 6.50478 6.51614 6.62701 6.81124 7.22984 7.53495 7.77221 7.86033 8.06640 8.56574 8.82251 9.43886 10.91680 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.008550 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.065049 B = 3274.221132 C = 5304.989794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.310 3.690 4 N -0.528 5.528 5 S 0.104 5.896 6 C 0.375 3.625 7 N -0.523 5.523 8 C 0.248 3.752 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.126 3.874 18 C -0.088 4.088 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.145 4.145 22 N -0.576 5.576 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 2.397 9.241 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C 0.020 3.980 4 N -0.363 5.363 5 S 0.239 5.761 6 C -0.004 4.004 7 N -0.235 5.235 8 C 0.128 3.872 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.002 3.998 18 C -0.089 4.089 19 C -0.200 4.200 20 C -0.195 4.195 21 C -0.203 4.203 22 N -0.312 5.312 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.249 2.718 10.090 11.694 hybrid contribution -1.168 -0.227 -1.351 1.800 sum 4.081 2.491 8.740 9.962 Atomic orbital electron populations 1.21679 0.93867 1.01907 1.02677 1.20091 0.96511 0.87415 1.03574 1.23156 0.93523 0.98539 0.82751 1.77462 1.32376 1.01297 1.25148 1.84579 1.68229 1.21951 1.01385 1.25217 0.91151 0.90478 0.93522 1.46831 1.61543 1.09900 1.05229 1.19730 0.97486 0.97391 0.72580 1.21419 0.97812 1.40168 0.97437 0.92375 1.24880 0.97549 0.94816 0.96448 1.69927 1.34889 1.41117 1.07043 0.86454 0.84275 0.78181 0.78612 1.19817 1.20907 1.20789 1.21806 0.92894 0.82834 1.02224 1.21066 0.95147 0.96037 0.96686 1.21976 0.99640 1.02680 0.95700 1.21795 1.00983 0.95212 1.01474 1.22099 1.00968 0.99505 0.97742 1.67345 1.29025 1.06628 1.28220 0.91766 0.91876 0.92672 0.89167 0.89937 0.93383 0.93366 0.92630 0.88495 0.91232 0.92227 0.93237 0.91403 0.92612 0.92429 0.92325 0.92737 0.92689 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.65 16 2 C -0.03 -0.51 6.47 -27.88 -0.18 -0.69 16 3 C 0.31 6.02 6.82 -159.03 -1.08 4.94 16 4 N -0.53 -10.22 12.15 29.54 0.36 -9.86 16 5 S 0.10 1.86 19.63 -107.50 -2.11 -0.25 16 6 C 0.38 7.69 6.34 -86.35 -0.55 7.14 16 7 N -0.52 -10.47 2.05 -176.55 -0.36 -10.84 16 8 C 0.25 5.93 4.23 -5.19 -0.02 5.91 16 9 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.13 2.02 4.60 -4.04 -0.02 2.00 16 18 C -0.09 -1.19 0.84 -154.51 -0.13 -1.32 16 19 C -0.14 -2.09 7.22 37.16 0.27 -1.82 16 20 C -0.14 -1.47 8.47 37.16 0.31 -1.16 16 21 C -0.15 -2.01 6.91 37.16 0.26 -1.75 16 22 N -0.58 -12.61 10.06 -14.57 -0.15 -12.75 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.15 6.05 -51.93 -0.31 0.84 16 29 H 0.05 1.30 7.73 -51.93 -0.40 0.90 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.10 1.56 8.07 -51.93 -0.42 1.14 16 32 H 0.07 1.03 7.23 -51.93 -0.38 0.65 16 33 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.18 5.99 -51.93 -0.31 0.87 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.90 5.99 -51.93 -0.31 0.58 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.81 6.85 -51.93 -0.36 0.45 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -29.47 338.23 -9.32 -38.79 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.68 Total: -0.86 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.20 Total: -1.13 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.59 Total: -57.73 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.11 Total: -0.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.47 -9.32 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569590279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.598 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds