Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36743 * 125.08136 * 2 1 4 4 C 1.34268 * 109.89981 * 179.97438 * 3 2 1 5 5 C 1.46476 * 107.01883 * 359.97438 * 4 3 2 6 6 C 1.39821 * 133.97277 * 180.02562 * 5 4 3 7 7 C 1.36599 * 119.89754 * 179.97438 * 6 5 4 8 8 C 1.38790 * 120.59016 * 0.02562 * 7 6 5 9 9 C 1.38367 * 120.57646 * 359.95340 * 8 7 6 10 10 N 1.39832 * 120.17216 * 180.02562 * 9 8 7 11 11 C 1.46499 * 120.00060 * 6.04535 * 10 9 8 12 12 C 1.53003 * 109.47212 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47199 * 54.99690 * 12 11 10 14 14 C 1.47201 * 109.46949 * 295.00178 * 12 11 10 15 15 N 5.52748 * 48.08194 * 147.72114 * 2 1 3 16 16 C 1.52994 * 109.47432 * 175.00153 * 12 11 10 17 17 C 1.50700 * 109.47550 * 184.99881 * 16 12 11 18 18 H 1.07999 * 119.99670 * 0.02562 * 17 16 12 19 19 C 1.37873 * 119.99999 * 179.97438 * 17 16 12 20 20 N 1.31517 * 119.99485 * 180.02562 * 19 17 16 21 21 Si 1.86789 * 120.00396 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47383 * 89.99674 * 21 19 17 23 23 H 1.48503 * 109.47317 * 210.00133 * 21 19 17 24 24 H 1.48501 * 109.47183 * 329.99817 * 21 19 17 25 25 C 1.37834 * 125.07795 * 180.26621 * 2 1 3 26 26 H 1.08994 * 109.46769 * 96.27529 * 1 2 3 27 27 H 1.08995 * 109.47571 * 216.27776 * 1 2 3 28 28 H 1.08999 * 109.46619 * 336.27701 * 1 2 3 29 29 H 1.08000 * 125.05173 * 359.97438 * 3 2 1 30 30 H 1.07999 * 126.49033 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.05414 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.70381 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.70795 * 179.97438 * 8 7 6 34 34 H 0.97003 * 119.99712 * 186.05594 * 10 9 8 35 35 H 1.08999 * 109.46727 * 60.00417 * 11 10 9 36 36 H 1.08997 * 109.47287 * 300.00452 * 11 10 9 37 37 H 1.09003 * 109.47200 * 305.00013 * 16 12 11 38 38 H 1.09003 * 109.47312 * 64.99844 * 16 12 11 39 39 H 0.97002 * 119.99508 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1190 0.0000 4 6 3.5468 0.7674 0.0006 5 6 3.5938 -0.6966 0.0016 6 6 4.6306 -1.6346 0.0029 7 6 4.3411 -2.9696 0.0042 8 6 3.0237 -3.4066 0.0036 9 6 1.9806 -2.4975 0.0027 10 7 0.6565 -2.9471 0.0026 11 6 0.3686 -4.3772 0.1371 12 6 -1.1452 -4.5978 0.1067 13 1 -1.5588 -4.1544 -0.7991 14 6 -1.7570 -3.9647 1.2864 15 7 -2.2277 -3.4774 2.1965 16 6 -1.4424 -6.0985 0.1216 17 6 -2.9253 -6.3185 -0.0319 18 1 -3.5893 -5.4725 -0.1307 19 6 -3.4341 -7.5998 -0.0473 20 7 -4.7283 -7.7918 -0.1818 21 14 -2.2856 -9.0631 0.1228 22 1 -2.1322 -9.4076 1.5592 23 1 -2.8529 -10.2252 -0.6072 24 1 -0.9585 -8.7197 -0.4483 25 6 2.2572 -1.1280 -0.0052 26 1 -0.3633 -0.1123 -1.0215 27 1 -0.3634 -0.8284 0.6080 28 1 -0.3632 0.9408 0.4135 29 1 1.8839 2.1347 -0.0004 30 1 4.3940 1.4372 0.0003 31 1 5.6588 -1.3043 0.0030 32 1 5.1444 -3.6915 0.0048 33 1 2.8111 -4.4654 0.0041 34 1 -0.0713 -2.3121 -0.0867 35 1 0.7702 -4.7413 1.0827 36 1 0.8311 -4.9201 -0.6872 37 1 -0.9163 -6.5813 -0.7020 38 1 -1.1076 -6.5258 1.0668 39 1 -5.0863 -8.6933 -0.1923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570083613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = 89.239549 kcal Electronic energy + Delta-G solvation = -21080.390811 eV Core-core repulsion = 17988.476327 eV Total energy + Delta-G solvation = -3091.914484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33499 -38.09119 -36.84176 -35.27686 -33.84758 -32.43496 -31.57822 -29.50295 -28.75227 -27.15649 -25.80998 -23.84188 -22.37613 -21.61668 -21.10661 -20.09412 -17.61122 -17.02430 -16.88438 -16.59342 -15.76858 -15.51227 -15.33462 -14.65806 -14.17930 -13.99032 -13.66969 -13.46923 -13.23556 -13.00008 -12.83246 -12.79057 -12.61922 -12.29466 -12.23082 -11.66359 -11.50894 -11.43899 -11.26675 -11.11553 -10.94636 -10.47176 -10.17529 -10.13805 -9.92056 -9.44969 -8.70067 -8.64811 -8.15072 -6.87989 -6.19118 -4.21140 1.36042 1.74935 2.73800 2.74395 3.22015 3.29424 3.29599 3.33097 3.38603 3.51120 4.06953 4.31178 4.49697 4.55027 4.68496 4.77266 4.94442 5.04537 5.15479 5.16028 5.23819 5.34229 5.44974 5.55292 5.65295 5.75945 5.81854 5.92600 5.99251 6.08768 6.10144 6.38379 6.66058 6.81470 6.85091 6.85392 6.96689 7.07629 7.22810 7.42282 7.53092 7.70673 8.17002 8.31280 8.82338 9.40024 10.93715 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.003847 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.225346 B = 7277.458671 C = 8140.227558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.482 5.482 3 C 0.052 3.948 4 C -0.216 4.216 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.091 4.091 8 C -0.198 4.198 9 C 0.223 3.777 10 N -0.756 5.756 11 C 0.130 3.870 12 C 0.006 3.994 13 H 0.112 0.888 14 C 0.234 3.766 15 N -0.458 5.458 16 C -0.002 4.002 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.261 1.261 25 C 0.034 3.966 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.393 0.607 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.869 14.033 -2.534 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.166 5.166 3 C -0.075 4.075 4 C -0.242 4.242 5 C -0.073 4.073 6 C -0.161 4.161 7 C -0.110 4.110 8 C -0.224 4.224 9 C 0.119 3.881 10 N -0.389 5.389 11 C 0.005 3.995 12 C -0.016 4.016 13 H 0.130 0.870 14 C -0.083 4.083 15 N -0.135 5.135 16 C -0.041 4.041 17 C -0.570 4.570 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.073 4.073 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.182 0.818 30 H 0.161 0.839 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.598 14.435 -1.148 21.283 hybrid contribution 0.028 -0.810 -0.259 0.851 sum 15.626 13.625 -1.407 20.780 Atomic orbital electron populations 1.22070 0.77640 1.04318 1.03064 1.43684 1.05427 1.04334 1.63129 1.21739 0.90617 0.90848 1.04280 1.21607 0.95724 0.92961 1.13869 1.18991 0.91314 0.93205 1.03815 1.19965 0.97329 0.91979 1.06822 1.20347 0.95584 0.95181 0.99937 1.20304 0.91254 0.98324 1.12503 1.16910 0.85431 0.88298 0.97427 1.45054 1.03922 1.07741 1.82205 1.21537 0.94360 0.81261 1.02358 1.19241 0.91701 0.99707 0.90918 0.87045 1.28947 0.92802 0.92209 0.94343 1.81003 1.09440 1.11441 1.11584 1.19619 0.99153 0.87111 0.98210 1.20969 0.90028 0.94205 1.51802 0.90842 1.24983 0.94981 0.98971 0.94092 1.69902 1.11819 1.22127 1.49410 0.86808 0.81607 0.82402 0.78703 1.20175 1.21152 1.18574 1.17879 0.90774 0.86525 1.12100 0.90952 0.90389 0.89431 0.81821 0.83865 0.86750 0.86374 0.85613 0.77073 0.91495 0.90062 0.93968 0.95789 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.01 59.85 0.60 1.26 16 2 N -0.48 -5.63 3.18 -121.67 -0.39 -6.02 16 3 C 0.05 0.52 11.27 -16.76 -0.19 0.33 16 4 C -0.22 -2.39 11.08 -37.67 -0.42 -2.80 16 5 C -0.07 -0.90 6.37 -105.16 -0.67 -1.57 16 6 C -0.14 -1.71 10.05 -39.58 -0.40 -2.10 16 7 C -0.09 -1.08 9.97 -39.97 -0.40 -1.47 16 8 C -0.20 -2.56 9.31 -39.33 -0.37 -2.93 16 9 C 0.22 3.08 6.66 -83.61 -0.56 2.52 16 10 N -0.76 -9.99 5.46 -58.52 -0.32 -10.31 16 11 C 0.13 1.75 4.33 -4.04 -0.02 1.73 16 12 C 0.01 0.10 2.26 -93.41 -0.21 -0.11 16 13 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 14 C 0.23 4.46 13.45 -20.81 -0.28 4.18 16 15 N -0.46 -9.62 18.53 42.10 0.78 -8.84 16 16 C 0.00 -0.04 3.49 -27.89 -0.10 -0.14 16 17 C -0.53 -13.82 9.15 -34.44 -0.32 -14.14 16 18 H 0.07 2.09 7.84 -52.49 -0.41 1.68 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 21 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 25 C 0.03 0.47 6.82 -83.78 -0.57 -0.10 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.83 6.13 -51.93 -0.32 0.51 16 28 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.47 6.71 -52.49 -0.35 1.11 16 34 H 0.39 4.95 4.85 -40.82 -0.20 4.76 16 35 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 37 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -32.11 330.12 -7.83 -39.94 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.99 Total: 3.93 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.99 Total: -13.46 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.85 Total: -50.82 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.11 -7.83 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570083613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.178 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds