Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47243 * 2 1 4 4 N 1.46894 * 109.47586 * 120.00170 * 2 1 3 5 5 C 1.46902 * 110.99863 * 275.00086 * 4 2 1 6 6 C 1.50702 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.38637 * 119.74736 * 269.72832 * 6 5 4 8 8 C 1.37623 * 120.24631 * 179.72240 * 7 6 5 9 9 C 1.40720 * 119.74305 * 0.57042 * 8 7 6 10 10 C 1.41390 * 120.24234 * 179.68142 * 9 8 7 11 11 H 1.08004 * 120.00095 * 24.40871 * 10 9 8 12 12 C 1.39941 * 120.00173 * 204.40908 * 10 9 8 13 13 N 1.30825 * 119.99830 * 17.85818 * 12 10 9 14 14 Si 1.86804 * 120.00344 * 197.85713 * 12 10 9 15 15 H 1.48496 * 109.46920 * 60.00015 * 14 12 10 16 16 H 1.48500 * 109.47267 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46882 * 299.99961 * 14 12 10 18 18 C 1.40715 * 119.51134 * 359.70077 * 9 8 7 19 19 C 1.37622 * 119.74446 * 0.02562 * 18 9 8 20 20 C 1.50704 * 109.47032 * 240.00379 * 2 1 3 21 21 C 1.38617 * 120.44798 * 84.72018 * 20 2 1 22 22 C 1.38580 * 118.39505 * 179.80784 * 21 20 2 23 23 N 1.32348 * 119.10699 * 0.46279 * 22 21 20 24 24 C 1.31777 * 120.81906 * 359.75451 * 23 22 21 25 25 N 1.31818 * 121.75489 * 0.02562 * 24 23 22 26 26 H 1.09008 * 109.46850 * 299.99639 * 1 2 3 27 27 H 1.08992 * 109.47466 * 59.99679 * 1 2 3 28 28 H 1.08997 * 109.46706 * 180.02562 * 1 2 3 29 29 H 1.00901 * 111.00313 * 38.95045 * 4 2 1 30 30 H 1.09007 * 109.47257 * 299.99844 * 5 4 2 31 31 H 1.08998 * 109.47642 * 59.99873 * 5 4 2 32 32 H 1.07995 * 119.87891 * 359.97436 * 7 6 5 33 33 H 1.07996 * 120.12425 * 180.27471 * 8 7 6 34 34 H 0.96998 * 119.99955 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.12290 * 179.97438 * 18 9 8 36 36 H 1.08003 * 119.87044 * 179.97438 * 19 18 9 37 37 H 1.08003 * 120.80383 * 0.02562 * 21 20 2 38 38 H 1.08005 * 120.44556 * 180.21787 * 22 21 20 39 39 H 1.07994 * 119.12135 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2226 2.3468 6 6 2.5875 -0.5218 3.5559 7 6 1.6870 -1.1472 4.4044 8 6 2.1372 -1.8346 5.5083 9 6 3.5166 -1.8911 5.7809 10 6 3.9903 -2.5887 6.9158 11 1 3.3995 -3.3836 7.3465 12 6 5.2246 -2.2492 7.4811 13 7 5.7755 -1.0953 7.2044 14 14 6.0857 -3.4436 8.6306 15 1 6.3578 -4.7139 7.9113 16 1 7.3676 -2.8513 9.0903 17 1 5.2166 -3.7153 9.8037 18 6 4.4210 -1.2478 4.9158 19 6 3.9486 -0.5709 3.8146 20 6 2.0323 -0.7103 -1.2305 21 6 2.1628 -0.0292 -2.4308 22 6 2.6325 -0.7230 -3.5346 23 7 2.9302 -2.0065 -3.4094 24 6 2.7892 -2.6226 -2.2531 25 7 2.3495 -1.9940 -1.1811 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4497 -1.4979 1.4100 30 1 2.7589 1.0463 2.1181 31 1 1.0872 0.6163 2.5526 32 1 0.6284 -1.0982 4.1960 33 1 1.4342 -2.3248 6.1655 34 1 6.6312 -0.8601 7.5959 35 1 5.4817 -1.2844 5.1158 36 1 4.6409 -0.0761 3.1496 37 1 1.9079 1.0178 -2.5031 38 1 2.7504 -0.2241 -4.4852 39 1 3.0399 -3.6707 -2.1820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571083104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = 62.097101 kcal Electronic energy + Delta-G solvation = -20662.960557 eV Core-core repulsion = 17569.869088 eV Total energy + Delta-G solvation = -3093.091469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04918 -37.92676 -36.68728 -34.03750 -33.24739 -32.36346 -30.66593 -29.27025 -28.79574 -26.16593 -24.96890 -24.37654 -23.00343 -21.31564 -20.87634 -19.88624 -17.55349 -17.26367 -17.07236 -15.59382 -15.35903 -15.26530 -14.73829 -14.60161 -14.27071 -13.96146 -13.60330 -13.42031 -13.27327 -12.85583 -12.49269 -12.16454 -11.91022 -11.66262 -11.53935 -11.45332 -11.04500 -10.94695 -10.88006 -10.59158 -10.43871 -10.37280 -9.67786 -9.59996 -9.34003 -9.19040 -9.10173 -8.03504 -7.40222 -7.27659 -6.73682 -4.32105 0.84990 1.04845 2.77802 3.07901 3.10575 3.12001 3.21352 3.74261 3.95015 4.01708 4.11103 4.17843 4.60431 4.82886 4.90122 4.94269 5.01966 5.13686 5.36829 5.43466 5.59305 5.72102 5.76378 5.87197 5.90159 6.00574 6.25424 6.32587 6.38714 6.47926 6.96054 6.99521 7.09901 7.32907 7.38245 7.39779 7.64753 7.75065 7.92272 8.09019 8.11032 8.18443 8.33661 8.68060 8.92727 9.01551 10.20853 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.003178 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.588434 B = 8808.657423 C = 9330.480424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 H 0.096 0.904 4 N -0.664 5.664 5 C 0.124 3.876 6 C -0.212 4.212 7 C -0.084 4.084 8 C -0.228 4.228 9 C 0.113 3.887 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.793 5.793 14 Si 0.907 3.093 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.167 4.167 19 C -0.077 4.077 20 C 0.197 3.803 21 C -0.231 4.231 22 C 0.143 3.857 23 N -0.532 5.532 24 C 0.292 3.708 25 N -0.489 5.489 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.349 0.651 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.280 0.720 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 3.385 -15.304 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.114 0.886 4 N -0.296 5.296 5 C -0.003 4.003 6 C -0.214 4.214 7 C -0.103 4.103 8 C -0.247 4.247 9 C 0.111 3.889 10 C -0.493 4.493 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.418 5.418 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.187 4.187 19 C -0.096 4.096 20 C 0.050 3.950 21 C -0.253 4.253 22 C -0.023 4.023 23 N -0.246 5.246 24 C 0.005 3.995 25 N -0.202 5.202 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.169 0.831 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.264 2.654 -15.320 16.415 hybrid contribution -0.636 0.528 0.664 1.060 sum -5.900 3.182 -14.655 16.116 Atomic orbital electron populations 1.22467 0.95636 1.02818 1.02615 1.20490 0.92869 0.96864 0.88407 0.88612 1.60561 1.57027 1.09456 1.02509 1.20621 0.97595 0.93722 0.88385 1.18837 0.93785 1.10241 0.98552 1.20338 0.96234 0.98220 0.95465 1.20919 0.95298 1.08061 1.00459 1.17613 0.90613 0.89331 0.91351 1.19566 1.02477 1.16616 1.10684 0.90555 1.25903 0.96919 0.94738 0.96562 1.69823 1.16285 1.18604 1.37133 0.86389 0.78680 0.81374 0.80393 1.18807 1.20367 1.19048 1.21308 0.99786 1.02923 0.94668 1.20480 0.93714 0.98862 0.96576 1.21801 0.89135 0.89995 0.94109 1.22690 1.04642 1.02964 0.95051 1.23117 0.90579 0.90039 0.98545 1.68393 1.17555 1.10662 1.28017 1.25070 0.90681 1.00719 0.83070 1.68318 1.11099 1.09719 1.31107 0.91317 0.92180 0.91979 0.83068 0.92055 0.96207 0.89951 0.89203 0.90865 0.86576 0.89615 0.83875 0.81872 0.78949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.14 37.16 0.34 -1.44 16 2 C 0.13 1.52 2.87 -68.87 -0.20 1.32 16 3 H 0.10 1.05 7.78 -51.93 -0.40 0.65 16 4 N -0.66 -10.39 5.82 -109.22 -0.64 -11.03 16 5 C 0.12 2.10 5.60 -4.97 -0.03 2.07 16 6 C -0.21 -4.56 5.41 -104.33 -0.56 -5.12 16 7 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 8 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 9 C 0.11 3.06 5.58 -106.83 -0.60 2.46 16 10 C -0.46 -12.46 9.05 -37.75 -0.34 -12.80 16 11 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 12 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 13 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 14 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 15 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 C -0.17 -4.42 8.70 -38.87 -0.34 -4.75 16 19 C -0.08 -1.83 9.67 -39.66 -0.38 -2.22 16 20 C 0.20 2.47 5.92 -82.24 -0.49 1.98 16 21 C -0.23 -2.27 9.88 -39.32 -0.39 -2.65 16 22 C 0.14 1.39 11.30 -17.20 -0.19 1.20 16 23 N -0.53 -6.38 10.44 -14.58 -0.15 -6.54 16 24 C 0.29 3.65 12.29 -92.15 -1.13 2.52 16 25 N -0.49 -6.92 9.88 -10.80 -0.11 -7.03 16 26 H 0.07 0.69 7.45 -51.92 -0.39 0.30 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.35 5.71 8.46 -39.29 -0.33 5.38 16 30 H 0.06 1.01 8.00 -51.93 -0.42 0.60 16 31 H 0.02 0.31 7.37 -51.93 -0.38 -0.07 16 32 H 0.08 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 35 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 36 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.19 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -29.49 334.06 -10.62 -40.11 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.18 Total: 9.53 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -5.16 Total: -23.82 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.29 Total: -44.69 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.49 -10.62 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571083104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.209 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds