Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47243 * 2 1 4 4 N 1.46894 * 109.47586 * 120.00170 * 2 1 3 5 5 C 1.46902 * 110.99863 * 275.00086 * 4 2 1 6 6 C 1.50702 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.38637 * 119.74736 * 269.72832 * 6 5 4 8 8 C 1.37623 * 120.24631 * 179.72240 * 7 6 5 9 9 C 1.40720 * 119.74305 * 0.57042 * 8 7 6 10 10 C 1.41390 * 120.24234 * 179.68142 * 9 8 7 11 11 H 1.08004 * 120.00095 * 24.40871 * 10 9 8 12 12 C 1.39941 * 120.00173 * 204.40908 * 10 9 8 13 13 N 1.30825 * 119.99830 * 17.85818 * 12 10 9 14 14 Si 1.86804 * 120.00344 * 197.85713 * 12 10 9 15 15 H 1.48496 * 109.46920 * 60.00015 * 14 12 10 16 16 H 1.48500 * 109.47267 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46882 * 299.99961 * 14 12 10 18 18 C 1.40715 * 119.51134 * 359.70077 * 9 8 7 19 19 C 1.37622 * 119.74446 * 0.02562 * 18 9 8 20 20 C 1.50704 * 109.47032 * 240.00379 * 2 1 3 21 21 C 1.38617 * 120.44798 * 84.72018 * 20 2 1 22 22 C 1.38580 * 118.39505 * 179.80784 * 21 20 2 23 23 N 1.32348 * 119.10699 * 0.46279 * 22 21 20 24 24 C 1.31777 * 120.81906 * 359.75451 * 23 22 21 25 25 N 1.31818 * 121.75489 * 0.02562 * 24 23 22 26 26 H 1.09008 * 109.46850 * 299.99639 * 1 2 3 27 27 H 1.08992 * 109.47466 * 59.99679 * 1 2 3 28 28 H 1.08997 * 109.46706 * 180.02562 * 1 2 3 29 29 H 1.00901 * 111.00313 * 38.95045 * 4 2 1 30 30 H 1.09007 * 109.47257 * 299.99844 * 5 4 2 31 31 H 1.08998 * 109.47642 * 59.99873 * 5 4 2 32 32 H 1.07995 * 119.87891 * 359.97436 * 7 6 5 33 33 H 1.07996 * 120.12425 * 180.27471 * 8 7 6 34 34 H 0.96998 * 119.99955 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.12290 * 179.97438 * 18 9 8 36 36 H 1.08003 * 119.87044 * 179.97438 * 19 18 9 37 37 H 1.08003 * 120.80383 * 0.02562 * 21 20 2 38 38 H 1.08005 * 120.44556 * 180.21787 * 22 21 20 39 39 H 1.07994 * 119.12135 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2226 2.3468 6 6 2.5875 -0.5218 3.5559 7 6 1.6870 -1.1472 4.4044 8 6 2.1372 -1.8346 5.5083 9 6 3.5166 -1.8911 5.7809 10 6 3.9903 -2.5887 6.9158 11 1 3.3995 -3.3836 7.3465 12 6 5.2246 -2.2492 7.4811 13 7 5.7755 -1.0953 7.2044 14 14 6.0857 -3.4436 8.6306 15 1 6.3578 -4.7139 7.9113 16 1 7.3676 -2.8513 9.0903 17 1 5.2166 -3.7153 9.8037 18 6 4.4210 -1.2478 4.9158 19 6 3.9486 -0.5709 3.8146 20 6 2.0323 -0.7103 -1.2305 21 6 2.1628 -0.0292 -2.4308 22 6 2.6325 -0.7230 -3.5346 23 7 2.9302 -2.0065 -3.4094 24 6 2.7892 -2.6226 -2.2531 25 7 2.3495 -1.9940 -1.1811 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4497 -1.4979 1.4100 30 1 2.7589 1.0463 2.1181 31 1 1.0872 0.6163 2.5526 32 1 0.6284 -1.0982 4.1960 33 1 1.4342 -2.3248 6.1655 34 1 6.6312 -0.8601 7.5959 35 1 5.4817 -1.2844 5.1158 36 1 4.6409 -0.0761 3.1496 37 1 1.9079 1.0178 -2.5031 38 1 2.7504 -0.2241 -4.4852 39 1 3.0399 -3.6707 -2.1820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571083104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = 45.429720 kcal Electronic energy + Delta-G solvation = -20663.683309 eV Core-core repulsion = 17569.869088 eV Total energy + Delta-G solvation = -3093.814220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89137 -39.60802 -37.93184 -35.71379 -34.36934 -33.40549 -32.03742 -31.12686 -30.16621 -27.71267 -25.95490 -25.29880 -24.48099 -22.85128 -22.15364 -21.65208 -19.19911 -18.42027 -18.03432 -17.15175 -16.52786 -16.25631 -15.88295 -15.73716 -15.61328 -15.56229 -14.92819 -14.71466 -14.35095 -14.17748 -13.84964 -13.78123 -13.29000 -13.21484 -13.08383 -12.70754 -12.59339 -12.35386 -12.22085 -12.06521 -11.70000 -11.49182 -11.41343 -11.20716 -10.99005 -10.46278 -10.08934 -9.31803 -9.29502 -9.07337 -8.62387 -6.31405 0.02625 0.23535 0.97988 1.18481 1.37166 1.48429 1.53661 2.20938 2.70259 2.89421 3.17540 3.24581 3.38353 3.75976 3.90253 4.09102 4.15520 4.27134 4.29124 4.36671 4.40586 4.58883 4.63464 4.66122 4.70661 4.84359 4.89970 4.98628 5.09386 5.17749 5.19913 5.41562 5.49598 5.52049 5.73877 5.96394 6.09560 6.13231 6.25614 6.34559 6.42106 6.55527 6.73914 6.96502 7.07359 7.25690 8.34547 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.003178 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.588434 B = 8808.657423 C = 9330.480424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 H 0.112 0.888 4 N -0.679 5.679 5 C 0.133 3.867 6 C -0.198 4.198 7 C -0.083 4.083 8 C -0.244 4.244 9 C 0.079 3.921 10 C -0.505 4.505 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.827 5.827 14 Si 0.981 3.019 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.258 1.258 18 C -0.193 4.193 19 C -0.087 4.087 20 C 0.174 3.826 21 C -0.220 4.220 22 C 0.139 3.861 23 N -0.547 5.547 24 C 0.277 3.723 25 N -0.524 5.524 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.343 0.657 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.287 0.713 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.179 0.821 38 H 0.201 0.799 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 4.618 -17.007 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.130 0.870 4 N -0.310 5.310 5 C 0.005 3.995 6 C -0.199 4.199 7 C -0.102 4.102 8 C -0.264 4.264 9 C 0.077 3.923 10 C -0.535 4.535 11 H 0.091 0.909 12 C -0.180 4.180 13 N -0.453 5.453 14 Si 0.802 3.198 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.182 1.182 18 C -0.212 4.212 19 C -0.105 4.105 20 C 0.027 3.973 21 C -0.242 4.242 22 C -0.026 4.026 23 N -0.262 5.262 24 C -0.011 4.011 25 N -0.238 5.238 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.196 0.804 38 H 0.217 0.783 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.277 3.905 -17.039 18.574 hybrid contribution -0.422 0.240 0.995 1.107 sum -6.699 4.146 -16.044 17.874 Atomic orbital electron populations 1.22380 0.94013 1.02398 1.03887 1.20596 0.94128 0.97049 0.86561 0.87019 1.60402 1.58058 1.09432 1.03107 1.20507 0.98675 0.93316 0.86977 1.19340 0.92717 1.08296 0.99559 1.20692 0.98175 0.96953 0.94340 1.21155 0.94656 1.08819 1.01735 1.17952 0.91869 0.90428 0.92052 1.19813 1.04198 1.17636 1.11823 0.90854 1.26750 0.97015 0.96202 0.98020 1.69880 1.16869 1.20105 1.38419 0.85278 0.77746 0.78659 0.78165 1.18690 1.19111 1.18245 1.21258 0.98917 1.04866 0.96201 1.20713 0.95313 0.98560 0.95950 1.22033 0.90015 0.89923 0.95315 1.23015 1.03078 1.04382 0.93742 1.23795 0.89324 0.89361 1.00105 1.68441 1.18043 1.12024 1.27708 1.25324 0.91106 1.01461 0.83179 1.68272 1.12393 1.11001 1.32129 0.90968 0.89918 0.93239 0.83764 0.91285 0.93995 0.86531 0.88732 0.90237 0.88656 0.88448 0.80389 0.78255 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.14 71.98 0.66 -2.20 16 2 C 0.13 2.72 2.87 44.17 0.13 2.85 16 3 H 0.11 2.01 7.78 -2.39 -0.02 1.99 16 4 N -0.68 -19.89 5.82 -499.46 -2.91 -22.80 16 5 C 0.13 4.15 5.60 85.56 0.48 4.63 16 6 C -0.20 -8.25 5.41 -19.68 -0.11 -8.36 16 7 C -0.08 -3.58 9.67 22.22 0.21 -3.36 16 8 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 9 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 10 C -0.51 -28.31 9.05 23.46 0.21 -28.10 16 11 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 12 C 0.03 1.81 5.14 85.26 0.44 2.25 16 13 N -0.83 -44.73 10.95 21.83 0.24 -44.49 16 14 Si 0.98 39.51 29.60 68.60 2.03 41.54 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 18 C -0.19 -10.58 8.70 22.73 0.20 -10.39 16 19 C -0.09 -4.14 9.67 22.22 0.21 -3.92 16 20 C 0.17 3.97 5.92 42.58 0.25 4.22 16 21 C -0.22 -3.57 9.88 22.44 0.22 -3.35 16 22 C 0.14 2.30 11.30 84.70 0.96 3.26 16 23 N -0.55 -12.31 10.44 -200.05 -2.09 -14.40 16 24 C 0.28 6.77 12.29 180.88 2.22 9.00 16 25 N -0.52 -14.42 9.88 -188.07 -1.86 -16.27 16 26 H 0.07 1.19 7.45 -2.38 -0.02 1.17 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 29 H 0.34 10.74 8.46 -89.69 -0.76 9.98 16 30 H 0.07 2.07 8.00 -2.38 -0.02 2.05 16 31 H 0.04 1.14 7.37 -2.39 -0.02 1.13 16 32 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 35 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 36 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.20 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -66.75 334.06 1.91 -64.84 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.30 Total: 32.75 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 6.19 Total: -41.17 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -6.61 Total: -97.96 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -66.75 1.91 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571083104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.272 kcal (2) G-P(sol) polarization free energy of solvation -66.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds