Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 N 1.46897 * 109.47210 * 239.99947 * 2 1 3 5 5 C 1.46900 * 111.00433 * 84.99936 * 4 2 1 6 6 C 1.50700 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75032 * 90.00166 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.50699 * 109.47169 * 119.99429 * 2 1 3 21 21 C 1.38621 * 120.44888 * 275.00006 * 20 2 1 22 22 C 1.38576 * 118.39695 * 180.02562 * 21 20 2 23 23 N 1.32348 * 119.10721 * 359.97438 * 22 21 20 24 24 C 1.31788 * 120.81967 * 0.02562 * 23 22 21 25 25 N 1.31809 * 121.74998 * 359.71420 * 24 23 22 26 26 H 1.09007 * 109.47042 * 60.00380 * 1 2 3 27 27 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47160 * 300.00729 * 1 2 3 29 29 H 1.00904 * 111.00028 * 208.94965 * 4 2 1 30 30 H 1.09002 * 109.47085 * 59.99646 * 5 4 2 31 31 H 1.09002 * 109.46852 * 300.00308 * 5 4 2 32 32 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 33 33 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 34 34 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 35 35 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 36 36 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 37 37 H 1.07992 * 120.79907 * 359.97438 * 21 20 2 38 38 H 1.07998 * 120.44886 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.12412 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5873 -0.5220 -3.5560 7 6 1.6872 -1.1521 -4.4013 8 6 2.1374 -1.8388 -5.5057 9 6 3.5164 -1.8913 -5.7808 10 6 3.9901 -2.5898 -6.9153 11 1 4.9399 -2.3239 -7.3554 12 6 3.2283 -3.6255 -7.4679 13 7 2.2765 -4.1840 -6.7654 14 14 3.5704 -4.2103 -9.2087 15 1 4.4895 -5.3760 -9.1676 16 1 2.2950 -4.6083 -9.8568 17 1 4.1987 -3.1117 -9.9856 18 6 4.4208 -1.2479 -4.9159 19 6 3.9485 -0.5711 -3.8148 20 6 2.0323 -0.7103 1.2305 21 6 2.1683 -0.0277 2.4293 22 6 2.6345 -0.7224 3.5340 23 7 2.9320 -2.0059 3.4090 24 6 2.7901 -2.6223 2.2528 25 7 2.3448 -1.9951 1.1824 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.9173 -1.1204 -1.0287 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6162 -2.5525 32 1 0.6291 -1.1077 -4.1899 33 1 1.4348 -2.3329 -6.1604 34 1 1.7487 -4.9022 -7.1482 35 1 5.4816 -1.2855 -5.1152 36 1 4.6408 -0.0768 -3.1492 37 1 1.9177 1.0204 2.5004 38 1 2.7527 -0.2233 4.4845 39 1 3.0414 -3.6702 2.1815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571083105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = 64.177312 kcal Electronic energy + Delta-G solvation = -20701.301212 eV Core-core repulsion = 17608.299949 eV Total energy + Delta-G solvation = -3093.001264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16551 -37.88525 -36.62395 -34.04547 -33.26522 -32.41972 -30.62946 -29.31126 -28.86675 -26.30129 -24.90853 -24.46104 -22.99344 -21.00635 -20.89417 -19.85712 -17.63781 -17.25937 -17.20570 -15.64997 -15.32186 -15.28450 -15.02714 -14.66345 -14.13580 -13.91059 -13.65145 -13.42531 -13.35405 -12.58652 -12.22273 -12.06161 -11.99864 -11.87506 -11.47421 -11.26821 -11.01637 -10.95132 -10.84863 -10.68358 -10.46808 -10.35542 -9.77875 -9.55881 -9.34940 -9.27363 -9.08340 -8.03299 -7.39591 -7.26307 -6.72134 -4.31198 0.75237 0.93511 2.77396 3.08846 3.12190 3.12999 3.20517 3.65531 3.88366 3.95656 4.03499 4.13956 4.56779 4.75422 4.85018 4.90035 5.14743 5.29220 5.34787 5.50576 5.70287 5.75648 5.82140 5.88737 5.94107 6.20428 6.25477 6.28995 6.40301 6.48583 6.86153 6.99948 7.10850 7.33533 7.40004 7.41634 7.65693 7.76518 7.92582 8.01738 8.09690 8.19076 8.34464 8.68873 8.93550 9.02266 10.22135 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.003163 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.999204 B = 8851.120636 C = 9151.911469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.128 3.872 3 H 0.059 0.941 4 N -0.665 5.665 5 C 0.123 3.877 6 C -0.212 4.212 7 C -0.077 4.077 8 C -0.168 4.168 9 C 0.113 3.887 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.790 5.790 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.227 4.227 19 C -0.085 4.085 20 C 0.179 3.821 21 C -0.227 4.227 22 C 0.144 3.856 23 N -0.529 5.529 24 C 0.295 3.705 25 N -0.493 5.493 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.349 0.651 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 7.200 14.649 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 H 0.077 0.923 4 N -0.298 5.298 5 C -0.004 4.004 6 C -0.214 4.214 7 C -0.096 4.096 8 C -0.187 4.187 9 C 0.111 3.889 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.142 4.142 13 N -0.415 5.415 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.247 4.247 19 C -0.104 4.104 20 C 0.032 3.968 21 C -0.250 4.250 22 C -0.021 4.021 23 N -0.243 5.243 24 C 0.008 3.992 25 N -0.206 5.206 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.169 0.831 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.056 5.788 14.408 15.825 hybrid contribution 0.729 0.942 -0.347 1.241 sum -2.328 6.730 14.061 15.761 Atomic orbital electron populations 1.21759 0.92860 1.03079 1.01449 1.20534 0.96652 0.94527 0.86537 0.92316 1.60613 1.34819 1.32356 1.01991 1.20660 0.98930 0.91900 0.88916 1.18848 0.93287 1.10216 0.99054 1.20482 0.96796 0.97168 0.95118 1.21303 0.95968 1.02550 0.98867 1.17614 0.91488 0.88975 0.90866 1.19585 1.05105 1.14101 1.10561 0.90569 1.25904 0.93876 0.95448 0.98942 1.69841 1.16901 1.18553 1.36233 0.86348 0.78770 0.79491 0.82397 1.19620 1.20049 1.18483 1.20914 0.97518 1.08274 0.97986 1.20340 0.93847 0.99216 0.96971 1.21939 0.89799 0.90157 0.94935 1.22729 1.04218 1.03068 0.94967 1.23164 0.90395 0.89995 0.98562 1.68422 1.17449 1.10592 1.27827 1.25123 0.90277 1.00827 0.83004 1.68335 1.11148 1.09237 1.31877 0.91394 0.91493 0.92935 0.83114 0.96523 0.91830 0.89465 0.86562 0.90906 0.89237 0.90102 0.83704 0.81690 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.40 37.16 0.35 -1.20 16 2 C 0.13 1.64 2.90 -68.87 -0.20 1.44 16 3 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 4 N -0.66 -10.92 6.06 -109.22 -0.66 -11.59 16 5 C 0.12 2.13 5.60 -4.98 -0.03 2.11 16 6 C -0.21 -4.60 5.42 -104.33 -0.56 -5.17 16 7 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 8 C -0.17 -4.41 8.70 -38.87 -0.34 -4.74 16 9 C 0.11 3.05 5.57 -106.83 -0.60 2.46 16 10 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 11 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 12 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 13 N -0.79 -20.76 10.97 55.55 0.61 -20.15 16 14 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 C -0.23 -5.66 9.80 -38.88 -0.38 -6.04 16 19 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 20 C 0.18 2.24 5.72 -82.24 -0.47 1.77 16 21 C -0.23 -2.18 9.88 -39.32 -0.39 -2.57 16 22 C 0.14 1.36 11.30 -17.20 -0.19 1.16 16 23 N -0.53 -6.17 10.44 -14.58 -0.15 -6.32 16 24 C 0.30 3.62 12.29 -92.15 -1.13 2.49 16 25 N -0.49 -6.98 9.45 -10.79 -0.10 -7.08 16 26 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.35 6.18 7.87 -39.29 -0.31 5.87 16 30 H 0.02 0.27 8.00 -51.93 -0.42 -0.15 16 31 H 0.06 1.04 7.37 -51.93 -0.38 0.66 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 34 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -29.54 333.41 -10.61 -40.15 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.15 Total: 9.90 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -5.14 Total: -23.74 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.31 Total: -45.13 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.54 -10.61 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571083105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.327 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds