Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 N 1.46897 * 109.47210 * 239.99947 * 2 1 3 5 5 C 1.46900 * 111.00433 * 84.99936 * 4 2 1 6 6 C 1.50700 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75032 * 90.00166 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.50699 * 109.47169 * 119.99429 * 2 1 3 21 21 C 1.38621 * 120.44888 * 275.00006 * 20 2 1 22 22 C 1.38576 * 118.39695 * 180.02562 * 21 20 2 23 23 N 1.32348 * 119.10721 * 359.97438 * 22 21 20 24 24 C 1.31788 * 120.81967 * 0.02562 * 23 22 21 25 25 N 1.31809 * 121.74998 * 359.71420 * 24 23 22 26 26 H 1.09007 * 109.47042 * 60.00380 * 1 2 3 27 27 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47160 * 300.00729 * 1 2 3 29 29 H 1.00904 * 111.00028 * 208.94965 * 4 2 1 30 30 H 1.09002 * 109.47085 * 59.99646 * 5 4 2 31 31 H 1.09002 * 109.46852 * 300.00308 * 5 4 2 32 32 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 33 33 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 34 34 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 35 35 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 36 36 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 37 37 H 1.07992 * 120.79907 * 359.97438 * 21 20 2 38 38 H 1.07998 * 120.44886 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.12412 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5873 -0.5220 -3.5560 7 6 1.6872 -1.1521 -4.4013 8 6 2.1374 -1.8388 -5.5057 9 6 3.5164 -1.8913 -5.7808 10 6 3.9901 -2.5898 -6.9153 11 1 4.9399 -2.3239 -7.3554 12 6 3.2283 -3.6255 -7.4679 13 7 2.2765 -4.1840 -6.7654 14 14 3.5704 -4.2103 -9.2087 15 1 4.4895 -5.3760 -9.1676 16 1 2.2950 -4.6083 -9.8568 17 1 4.1987 -3.1117 -9.9856 18 6 4.4208 -1.2479 -4.9159 19 6 3.9485 -0.5711 -3.8148 20 6 2.0323 -0.7103 1.2305 21 6 2.1683 -0.0277 2.4293 22 6 2.6345 -0.7224 3.5340 23 7 2.9320 -2.0059 3.4090 24 6 2.7901 -2.6223 2.2528 25 7 2.3448 -1.9951 1.1824 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.9173 -1.1204 -1.0287 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6162 -2.5525 32 1 0.6291 -1.1077 -4.1899 33 1 1.4348 -2.3329 -6.1604 34 1 1.7487 -4.9022 -7.1482 35 1 5.4816 -1.2855 -5.1152 36 1 4.6408 -0.0768 -3.1492 37 1 1.9177 1.0204 2.5004 38 1 2.7527 -0.2233 4.4845 39 1 3.0414 -3.6702 2.1815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571083105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = 47.420256 kcal Electronic energy + Delta-G solvation = -20702.027853 eV Core-core repulsion = 17608.299949 eV Total energy + Delta-G solvation = -3093.727904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99852 -39.60111 -37.88079 -35.72147 -34.38724 -33.48025 -32.00037 -31.15271 -30.29645 -27.86991 -25.98627 -25.35626 -24.45347 -22.83398 -21.97073 -21.60195 -19.20217 -18.49151 -18.19764 -17.15691 -16.45532 -16.36953 -16.07534 -15.78737 -15.61618 -15.54982 -15.09923 -14.65304 -14.39734 -14.22604 -13.79363 -13.50447 -13.42394 -13.25997 -12.85780 -12.76037 -12.65792 -12.32989 -12.14272 -12.04748 -11.74418 -11.61131 -11.38620 -11.21762 -10.98237 -10.53704 -10.15489 -9.32368 -9.31851 -9.09726 -8.61589 -6.31490 -0.05894 0.14474 0.97284 1.17695 1.37647 1.48752 1.54379 2.21396 2.69611 2.82540 3.01695 3.21527 3.32990 3.69436 3.83648 4.06626 4.20249 4.24206 4.28156 4.36570 4.44669 4.59694 4.62085 4.66625 4.73041 4.79713 4.95401 4.96797 5.08779 5.17673 5.32832 5.41279 5.45700 5.49300 5.73761 5.95384 6.04475 6.12502 6.23235 6.33223 6.41865 6.50488 6.73782 6.96539 7.07079 7.17425 8.35241 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.003163 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.999204 B = 8851.120636 C = 9151.911469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.130 3.870 3 H 0.084 0.916 4 N -0.681 5.681 5 C 0.131 3.869 6 C -0.198 4.198 7 C -0.084 4.084 8 C -0.192 4.192 9 C 0.079 3.921 10 C -0.504 4.504 11 H 0.073 0.927 12 C 0.034 3.966 13 N -0.826 5.826 14 Si 0.982 3.018 15 H -0.263 1.263 16 H -0.265 1.265 17 H -0.259 1.259 18 C -0.244 4.244 19 C -0.086 4.086 20 C 0.157 3.843 21 C -0.214 4.214 22 C 0.143 3.857 23 N -0.543 5.543 24 C 0.281 3.719 25 N -0.530 5.530 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.339 0.661 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.287 0.713 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.181 0.819 38 H 0.204 0.796 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 9.049 16.435 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.020 3.980 3 H 0.101 0.899 4 N -0.313 5.313 5 C 0.003 3.997 6 C -0.200 4.200 7 C -0.103 4.103 8 C -0.211 4.211 9 C 0.077 3.923 10 C -0.534 4.534 11 H 0.091 0.909 12 C -0.180 4.180 13 N -0.452 5.452 14 Si 0.802 3.198 15 H -0.188 1.188 16 H -0.190 1.190 17 H -0.182 1.182 18 C -0.264 4.264 19 C -0.105 4.105 20 C 0.011 3.989 21 C -0.236 4.236 22 C -0.022 4.022 23 N -0.257 5.257 24 C -0.006 4.006 25 N -0.244 5.244 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.199 0.801 38 H 0.221 0.779 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.218 7.655 16.213 18.216 hybrid contribution 0.749 0.474 -0.682 1.119 sum -2.469 8.129 15.531 17.703 Atomic orbital electron populations 1.21737 0.92217 1.01868 1.02880 1.20634 0.97025 0.95268 0.85101 0.89890 1.60488 1.34370 1.33041 1.03445 1.20574 0.99857 0.91783 0.87453 1.19339 0.92765 1.08165 0.99707 1.20729 0.98070 0.96854 0.94643 1.21269 0.95669 1.04082 1.00099 1.17956 0.92234 0.90187 0.91917 1.19829 1.05940 1.15664 1.11949 0.90860 1.26767 0.93334 0.94982 1.02966 1.69901 1.17955 1.19252 1.38095 0.85210 0.78964 0.78950 0.76666 1.18766 1.18979 1.18234 1.21134 0.97628 1.08873 0.98763 1.20675 0.94906 0.98489 0.96390 1.22059 0.90862 0.90048 0.95980 1.23045 1.02506 1.04491 0.93518 1.23865 0.88979 0.89253 1.00110 1.68475 1.17859 1.11980 1.27401 1.25345 0.90698 1.01507 0.83093 1.68270 1.12525 1.10604 1.33040 0.91392 0.93992 0.90059 0.84174 0.94452 0.90602 0.88003 0.88482 0.90243 0.88861 0.87013 0.80147 0.77900 0.77728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.40 71.98 0.68 -1.99 16 2 C 0.13 2.95 2.90 44.17 0.13 3.08 16 3 H 0.08 1.51 7.78 -2.39 -0.02 1.49 16 4 N -0.68 -21.19 6.06 -499.47 -3.03 -24.21 16 5 C 0.13 4.19 5.60 85.56 0.48 4.67 16 6 C -0.20 -8.39 5.42 -19.67 -0.11 -8.49 16 7 C -0.08 -4.01 9.67 22.22 0.21 -3.79 16 8 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 9 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.50 -28.30 9.05 23.46 0.21 -28.08 16 11 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 12 C 0.03 1.78 5.14 85.26 0.44 2.22 16 13 N -0.83 -45.05 10.97 21.82 0.24 -44.81 16 14 Si 0.98 39.47 29.60 68.60 2.03 41.50 16 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 18 C -0.24 -12.41 9.80 22.73 0.22 -12.18 16 19 C -0.09 -3.79 9.67 22.22 0.21 -3.57 16 20 C 0.16 3.57 5.72 42.58 0.24 3.82 16 21 C -0.21 -3.30 9.88 22.44 0.22 -3.08 16 22 C 0.14 2.21 11.30 84.70 0.96 3.17 16 23 N -0.54 -11.73 10.44 -200.05 -2.09 -13.81 16 24 C 0.28 6.76 12.29 180.88 2.22 8.98 16 25 N -0.53 -14.67 9.45 -188.06 -1.78 -16.45 16 26 H 0.07 1.40 7.45 -2.38 -0.02 1.38 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.34 11.64 7.87 -89.69 -0.71 10.93 16 30 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 31 H 0.08 2.26 7.37 -2.39 -0.02 2.24 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 5.58 6.17 -2.91 -0.02 5.56 16 34 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 35 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.21 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -67.15 333.41 1.93 -65.22 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.35 Total: 33.77 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 6.20 Total: -41.21 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.65 Total: -99.28 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -67.15 1.93 -65.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571083105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.642 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds